data_3HWS # _model_server_result.job_id jy3wIK52k-B8EZ0NWTY5Gw _model_server_result.datetime_utc '2025-07-05 12:04:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hws # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":603}' # _entry.id 3HWS # _exptl.entry_id 3HWS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HWS _cell.length_a 54.085 _cell.length_b 178.498 _cell.length_c 201.369 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HWS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 1 1 A,E,F,G,H,I,J,X,Y,BA 2 1 B,C,D,K,L,M,N,O,P,Q,R,S,T,U,V,W,Z,AA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 K N N ? 2 U N N ? 2 X N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 233 _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 294 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id W _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 900 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.923 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3HWS _atom_sites.fract_transf_matrix[1][1] 0.018489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ADP A 1 600 600 ADP ADP . H 3 SO4 A 1 700 700 SO4 SO4 . I 3 SO4 A 1 701 701 SO4 SO4 . J 3 SO4 A 1 705 705 SO4 SO4 . K 2 ADP B 1 601 601 ADP ADP . L 3 SO4 B 1 702 702 SO4 SO4 . M 3 SO4 B 1 707 707 SO4 SO4 . N 3 SO4 B 1 708 708 SO4 SO4 . O 3 SO4 B 1 709 709 SO4 SO4 . P 4 MG B 1 901 901 MG MG . Q 3 SO4 C 1 500 500 SO4 SO4 . R 3 SO4 C 1 703 703 SO4 SO4 . S 3 SO4 C 1 704 704 SO4 SO4 . T 3 SO4 C 1 706 706 SO4 SO4 . U 2 ADP D 1 602 602 ADP ADP . V 3 SO4 D 1 710 710 SO4 SO4 . W 4 MG D 1 900 900 MG MG . X 2 ADP E 1 603 603 ADP ADP . Y 3 SO4 F 1 500 500 SO4 SO4 . Z 5 HOH B 1 802 802 HOH HOH . AA 5 HOH C 1 800 800 HOH HOH . AA 5 HOH C 2 803 803 HOH HOH . AA 5 HOH C 3 804 804 HOH HOH . BA 5 HOH E 1 801 801 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . X 2 6.756 9.698 92.558 1 143.72 ? PB ADP 603 E 1 HETATM 2 O O1B ADP . . . X 2 5.936 8.481 92.921 1 157.35 ? O1B ADP 603 E 1 HETATM 3 O O2B ADP . . . X 2 5.969 10.771 91.844 1 145.1 ? O2B ADP 603 E 1 HETATM 4 O O3B ADP . . . X 2 8.073 9.388 91.873 0.55 140.94 ? O3B ADP 603 E 1 HETATM 5 P PA ADP . . . X 2 5.968 11.122 94.846 0 137.29 ? PA ADP 603 E 1 HETATM 6 O O1A ADP . . . X 2 5.893 12.561 94.376 0.76 135.83 ? O1A ADP 603 E 1 HETATM 7 O O2A ADP . . . X 2 4.75 10.241 94.674 0.4 140.97 ? O2A ADP 603 E 1 HETATM 8 O O3A ADP . . . X 2 7.125 10.393 93.977 1 139.15 ? O3A ADP 603 E 1 HETATM 9 O O5' ADP . . . X 2 6.4 11.129 96.413 0.39 153.16 ? O5' ADP 603 E 1 HETATM 10 C C5' ADP . . . X 2 5.574 10.537 97.418 1 154.68 ? C5' ADP 603 E 1 HETATM 11 C C4' ADP . . . X 2 5.461 11.351 98.713 0.96 157.14 ? C4' ADP 603 E 1 HETATM 12 O O4' ADP . . . X 2 6.708 11.463 99.395 0.77 154.98 ? O4' ADP 603 E 1 HETATM 13 C C3' ADP . . . X 2 4.957 12.76 98.446 0.6 159.47 ? C3' ADP 603 E 1 HETATM 14 O O3' ADP . . . X 2 3.61 12.959 98.902 0.94 160.9 ? O3' ADP 603 E 1 HETATM 15 C C2' ADP . . . X 2 5.979 13.713 99.053 0.78 159.72 ? C2' ADP 603 E 1 HETATM 16 O O2' ADP . . . X 2 5.476 14.54 100.114 1 166.79 ? O2' ADP 603 E 1 HETATM 17 C C1' ADP . . . X 2 7.112 12.831 99.556 1 156.07 ? C1' ADP 603 E 1 HETATM 18 N N9 ADP . . . X 2 8.392 13.099 98.833 0.56 151.64 ? N9 ADP 603 E 1 HETATM 19 C C8 ADP . . . X 2 8.865 12.395 97.779 0.95 148.55 ? C8 ADP 603 E 1 HETATM 20 N N7 ADP . . . X 2 10.07 12.889 97.356 0.57 144.79 ? N7 ADP 603 E 1 HETATM 21 C C5 ADP . . . X 2 10.388 13.927 98.142 1 147.03 ? C5 ADP 603 E 1 HETATM 22 C C6 ADP . . . X 2 11.517 14.889 98.238 1 146.81 ? C6 ADP 603 E 1 HETATM 23 N N6 ADP . . . X 2 12.571 14.833 97.385 1 144.91 ? N6 ADP 603 E 1 HETATM 24 N N1 ADP . . . X 2 11.472 15.832 99.208 0.07 151.3 ? N1 ADP 603 E 1 HETATM 25 C C2 ADP . . . X 2 10.439 15.901 100.059 0.71 155.49 ? C2 ADP 603 E 1 HETATM 26 N N3 ADP . . . X 2 9.379 15.064 100.032 0.63 154.62 ? N3 ADP 603 E 1 HETATM 27 C C4 ADP . . . X 2 9.285 14.063 99.114 0.61 151.23 ? C4 ADP 603 E 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #