data_3HX4 # _model_server_result.job_id bXFT0p6YDhU-GIVFhDyyyw _model_server_result.datetime_utc '2024-11-25 01:34:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":612}' # _entry.id 3HX4 # _exptl.entry_id 3HX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HX4 _cell.length_a 49.236 _cell.length_b 95.605 _cell.length_c 101.612 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 369 A ASP 368 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A OD1 ASN 371 A ASN 370 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A OD2 ASP 373 A ASP 372 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc4 A O GLN 375 A GLN 374 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc5 A OE1 GLU 380 A GLU 379 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc6 A OE2 GLU 380 A GLU 379 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc7 A OD1 ASP 416 A ASP 415 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 A OD1 ASP 418 A ASP 417 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc9 A OD1 ASN 420 A ASN 419 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc10 A O TYR 422 A TYR 421 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc11 A OE2 GLU 424 A GLU 423 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc12 A OE1 GLU 427 A GLU 426 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc13 A OE2 GLU 427 A GLU 426 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc14 A OD1 ASP 452 A ASP 451 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc15 A OD2 ASP 454 A ASP 453 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc16 A OG SER 456 A SER 455 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc17 A O LYS 458 A LYS 457 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc18 A OE1 GLU 463 A GLU 462 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc19 A OE2 GLU 463 A GLU 462 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc20 A OD2 ASP 486 A ASP 485 1_555 E CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc21 A OD1 ASN 488 A ASN 487 1_555 E CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc22 A OD1 ASP 490 A ASP 489 1_555 E CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc23 A O GLU 492 A GLU 491 1_555 E CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc24 A OE1 GLU 497 A GLU 496 1_555 E CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc25 A OE2 GLU 497 A GLU 496 1_555 E CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc26 N O HOH . A HOH 508 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc27 N O HOH . A HOH 587 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc28 N O HOH . A HOH 588 1_555 E CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 3HX4 _atom_sites.fract_transf_matrix[1][1] 0.02031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01046 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 601 601 CA CA . C 2 CA A 1 602 602 CA CA . D 2 CA A 1 603 603 CA CA . E 2 CA A 1 604 604 CA CA . F 3 ANP A 1 605 605 ANP ANP . G 4 SO4 A 1 606 606 SO4 SO4 . H 4 SO4 A 1 607 607 SO4 SO4 . I 4 SO4 A 1 608 608 SO4 SO4 . J 4 SO4 A 1 609 609 SO4 SO4 . K 4 SO4 A 1 610 610 SO4 SO4 . L 5 GOL A 1 611 611 GOL GOL . M 5 GOL A 1 612 612 GOL GOL . N 6 HOH A 1 508 1 HOH HOH . N 6 HOH A 2 509 2 HOH HOH . N 6 HOH A 3 510 3 HOH HOH . N 6 HOH A 4 511 4 HOH HOH . N 6 HOH A 5 512 5 HOH HOH . N 6 HOH A 6 513 7 HOH HOH . N 6 HOH A 7 514 9 HOH HOH . N 6 HOH A 8 515 10 HOH HOH . N 6 HOH A 9 516 11 HOH HOH . N 6 HOH A 10 517 12 HOH HOH . N 6 HOH A 11 518 14 HOH HOH . N 6 HOH A 12 519 15 HOH HOH . N 6 HOH A 13 520 17 HOH HOH . N 6 HOH A 14 521 18 HOH HOH . N 6 HOH A 15 522 19 HOH HOH . N 6 HOH A 16 523 20 HOH HOH . N 6 HOH A 17 524 21 HOH HOH . N 6 HOH A 18 525 23 HOH HOH . N 6 HOH A 19 526 24 HOH HOH . N 6 HOH A 20 527 25 HOH HOH . N 6 HOH A 21 528 27 HOH HOH . N 6 HOH A 22 529 28 HOH HOH . N 6 HOH A 23 530 29 HOH HOH . N 6 HOH A 24 531 30 HOH HOH . N 6 HOH A 25 532 31 HOH HOH . N 6 HOH A 26 533 32 HOH HOH . N 6 HOH A 27 534 33 HOH HOH . N 6 HOH A 28 535 34 HOH HOH . N 6 HOH A 29 536 35 HOH HOH . N 6 HOH A 30 537 36 HOH HOH . N 6 HOH A 31 538 1 HOH HOH . N 6 HOH A 32 539 2 HOH HOH . N 6 HOH A 33 540 3 HOH HOH . N 6 HOH A 34 541 4 HOH HOH . N 6 HOH A 35 542 5 HOH HOH . N 6 HOH A 36 543 8 HOH HOH . N 6 HOH A 37 544 9 HOH HOH . N 6 HOH A 38 545 12 HOH HOH . N 6 HOH A 39 546 13 HOH HOH . N 6 HOH A 40 547 15 HOH HOH . N 6 HOH A 41 548 16 HOH HOH . N 6 HOH A 42 549 17 HOH HOH . N 6 HOH A 43 550 18 HOH HOH . N 6 HOH A 44 551 20 HOH HOH . N 6 HOH A 45 552 23 HOH HOH . N 6 HOH A 46 553 24 HOH HOH . N 6 HOH A 47 554 25 HOH HOH . N 6 HOH A 48 555 27 HOH HOH . N 6 HOH A 49 556 29 HOH HOH . N 6 HOH A 50 557 31 HOH HOH . N 6 HOH A 51 558 32 HOH HOH . N 6 HOH A 52 559 33 HOH HOH . N 6 HOH A 53 560 34 HOH HOH . N 6 HOH A 54 561 35 HOH HOH . N 6 HOH A 55 562 36 HOH HOH . N 6 HOH A 56 563 37 HOH HOH . N 6 HOH A 57 564 38 HOH HOH . N 6 HOH A 58 565 40 HOH HOH . N 6 HOH A 59 566 41 HOH HOH . N 6 HOH A 60 567 46 HOH HOH . N 6 HOH A 61 568 47 HOH HOH . N 6 HOH A 62 569 49 HOH HOH . N 6 HOH A 63 570 50 HOH HOH . N 6 HOH A 64 571 53 HOH HOH . N 6 HOH A 65 572 54 HOH HOH . N 6 HOH A 66 573 55 HOH HOH . N 6 HOH A 67 574 58 HOH HOH . N 6 HOH A 68 575 60 HOH HOH . N 6 HOH A 69 576 61 HOH HOH . N 6 HOH A 70 577 62 HOH HOH . N 6 HOH A 71 578 63 HOH HOH . N 6 HOH A 72 579 64 HOH HOH . N 6 HOH A 73 580 65 HOH HOH . N 6 HOH A 74 581 67 HOH HOH . N 6 HOH A 75 582 68 HOH HOH . N 6 HOH A 76 583 73 HOH HOH . N 6 HOH A 77 584 74 HOH HOH . N 6 HOH A 78 585 75 HOH HOH . N 6 HOH A 79 586 76 HOH HOH . N 6 HOH A 80 587 77 HOH HOH . N 6 HOH A 81 588 80 HOH HOH . N 6 HOH A 82 589 81 HOH HOH . N 6 HOH A 83 590 82 HOH HOH . N 6 HOH A 84 591 84 HOH HOH . N 6 HOH A 85 592 85 HOH HOH . N 6 HOH A 86 593 86 HOH HOH . N 6 HOH A 87 594 87 HOH HOH . N 6 HOH A 88 595 90 HOH HOH . N 6 HOH A 89 596 92 HOH HOH . N 6 HOH A 90 597 93 HOH HOH . N 6 HOH A 91 598 95 HOH HOH . N 6 HOH A 92 599 97 HOH HOH . N 6 HOH A 93 600 98 HOH HOH . N 6 HOH A 94 613 99 HOH HOH . N 6 HOH A 95 614 100 HOH HOH . N 6 HOH A 96 615 102 HOH HOH . N 6 HOH A 97 616 103 HOH HOH . N 6 HOH A 98 617 104 HOH HOH . N 6 HOH A 99 618 106 HOH HOH . N 6 HOH A 100 619 110 HOH HOH . N 6 HOH A 101 620 114 HOH HOH . N 6 HOH A 102 621 116 HOH HOH . N 6 HOH A 103 622 121 HOH HOH . N 6 HOH A 104 623 126 HOH HOH . N 6 HOH A 105 624 131 HOH HOH . N 6 HOH A 106 625 132 HOH HOH . N 6 HOH A 107 626 133 HOH HOH . N 6 HOH A 108 627 136 HOH HOH . N 6 HOH A 109 628 138 HOH HOH . N 6 HOH A 110 629 139 HOH HOH . N 6 HOH A 111 630 142 HOH HOH . N 6 HOH A 112 631 144 HOH HOH . N 6 HOH A 113 632 145 HOH HOH . N 6 HOH A 114 633 146 HOH HOH . N 6 HOH A 115 634 160 HOH HOH . N 6 HOH A 116 635 163 HOH HOH . N 6 HOH A 117 636 164 HOH HOH . N 6 HOH A 118 637 176 HOH HOH . N 6 HOH A 119 638 181 HOH HOH . N 6 HOH A 120 639 182 HOH HOH . N 6 HOH A 121 640 187 HOH HOH . N 6 HOH A 122 641 188 HOH HOH . N 6 HOH A 123 642 193 HOH HOH . N 6 HOH A 124 643 194 HOH HOH . N 6 HOH A 125 644 195 HOH HOH . N 6 HOH A 126 645 197 HOH HOH . N 6 HOH A 127 646 203 HOH HOH . N 6 HOH A 128 647 219 HOH HOH . N 6 HOH A 129 648 226 HOH HOH . N 6 HOH A 130 649 230 HOH HOH . N 6 HOH A 131 650 242 HOH HOH . N 6 HOH A 132 651 248 HOH HOH . N 6 HOH A 133 652 249 HOH HOH . N 6 HOH A 134 653 265 HOH HOH . N 6 HOH A 135 654 267 HOH HOH . N 6 HOH A 136 655 269 HOH HOH . N 6 HOH A 137 656 275 HOH HOH . N 6 HOH A 138 657 280 HOH HOH . N 6 HOH A 139 658 281 HOH HOH . N 6 HOH A 140 659 283 HOH HOH . N 6 HOH A 141 660 284 HOH HOH . N 6 HOH A 142 661 286 HOH HOH . N 6 HOH A 143 662 288 HOH HOH . N 6 HOH A 144 663 289 HOH HOH . N 6 HOH A 145 664 290 HOH HOH . N 6 HOH A 146 665 292 HOH HOH . N 6 HOH A 147 666 293 HOH HOH . N 6 HOH A 148 667 294 HOH HOH . N 6 HOH A 149 668 295 HOH HOH . N 6 HOH A 150 669 296 HOH HOH . N 6 HOH A 151 670 298 HOH HOH . N 6 HOH A 152 671 299 HOH HOH . N 6 HOH A 153 672 300 HOH HOH . N 6 HOH A 154 673 301 HOH HOH . N 6 HOH A 155 674 303 HOH HOH . N 6 HOH A 156 675 304 HOH HOH . N 6 HOH A 157 676 305 HOH HOH . N 6 HOH A 158 677 307 HOH HOH . N 6 HOH A 159 678 309 HOH HOH . N 6 HOH A 160 679 310 HOH HOH . N 6 HOH A 161 680 311 HOH HOH . N 6 HOH A 162 681 312 HOH HOH . N 6 HOH A 163 682 313 HOH HOH . N 6 HOH A 164 683 315 HOH HOH . N 6 HOH A 165 684 316 HOH HOH . N 6 HOH A 166 685 317 HOH HOH . N 6 HOH A 167 686 319 HOH HOH . N 6 HOH A 168 687 320 HOH HOH . N 6 HOH A 169 688 322 HOH HOH . N 6 HOH A 170 689 323 HOH HOH . N 6 HOH A 171 690 325 HOH HOH . N 6 HOH A 172 691 326 HOH HOH . N 6 HOH A 173 692 327 HOH HOH . N 6 HOH A 174 693 328 HOH HOH . N 6 HOH A 175 694 329 HOH HOH . N 6 HOH A 176 695 330 HOH HOH . N 6 HOH A 177 696 331 HOH HOH . N 6 HOH A 178 697 333 HOH HOH . N 6 HOH A 179 698 334 HOH HOH . N 6 HOH A 180 699 339 HOH HOH . N 6 HOH A 181 700 340 HOH HOH . N 6 HOH A 182 701 344 HOH HOH . N 6 HOH A 183 702 346 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 5 0.936 15.954 50.599 1 50.69 ? C1 GOL 612 A 1 HETATM 2 O O1 GOL . . . M 5 1.174 16.198 49.242 1 50.79 ? O1 GOL 612 A 1 HETATM 3 C C2 GOL . . . M 5 -0.264 15.031 50.704 1 52.2 ? C2 GOL 612 A 1 HETATM 4 O O2 GOL . . . M 5 -0.935 14.929 49.458 1 53.84 ? O2 GOL 612 A 1 HETATM 5 C C3 GOL . . . M 5 0.144 13.665 51.237 1 50.32 ? C3 GOL 612 A 1 HETATM 6 O O3 GOL . . . M 5 0.058 13.74 52.646 1 50.72 ? O3 GOL 612 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #