data_3HX9 # _model_server_result.job_id fW_pcHbRgznIgHKY5nTiYA _model_server_result.datetime_utc '2025-02-26 02:54:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3HX9 # _exptl.entry_id 3HX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.01 _cell.angle_gamma 90 _cell.entry_id 3HX9 _cell.length_a 43.971 _cell.length_b 64.622 _cell.length_c 71.082 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 75 A HIS 75 1_555 C FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 B NE2 HIS 75 B HIS 75 1_555 F FE HEM . B HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 3HX9 _atom_sites.fract_transf_matrix[1][1] 0.022742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000004 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 300 300 HEM HEM . D 3 CL A 1 301 301 CL CL . E 2 HEM A 1 200 200 HEM HEM . F 2 HEM B 1 300 300 HEM HEM . G 3 CL B 1 301 301 CL CL . H 2 HEM B 1 200 200 HEM HEM . I 4 HOH A 1 125 34 HOH HOH . I 4 HOH A 2 126 35 HOH HOH . I 4 HOH A 3 127 36 HOH HOH . I 4 HOH A 4 128 128 HOH HOH . I 4 HOH A 5 129 37 HOH HOH . I 4 HOH A 6 130 39 HOH HOH . I 4 HOH A 7 131 46 HOH HOH . I 4 HOH A 8 132 47 HOH HOH . I 4 HOH A 9 133 48 HOH HOH . I 4 HOH A 10 134 51 HOH HOH . I 4 HOH A 11 135 54 HOH HOH . I 4 HOH A 12 136 55 HOH HOH . I 4 HOH A 13 137 56 HOH HOH . I 4 HOH A 14 138 59 HOH HOH . I 4 HOH A 15 139 60 HOH HOH . I 4 HOH A 16 140 62 HOH HOH . I 4 HOH A 17 141 63 HOH HOH . I 4 HOH A 18 142 67 HOH HOH . I 4 HOH A 19 143 69 HOH HOH . I 4 HOH A 20 144 144 HOH HOH . I 4 HOH A 21 145 70 HOH HOH . I 4 HOH A 22 146 74 HOH HOH . I 4 HOH A 23 147 77 HOH HOH . I 4 HOH A 24 148 78 HOH HOH . I 4 HOH A 25 149 91 HOH HOH . I 4 HOH A 26 150 96 HOH HOH . I 4 HOH A 27 151 103 HOH HOH . I 4 HOH A 28 152 9 HOH HOH . I 4 HOH A 29 153 10 HOH HOH . I 4 HOH A 30 154 26 HOH HOH . I 4 HOH A 31 155 30 HOH HOH . I 4 HOH A 32 156 55 HOH HOH . I 4 HOH A 33 157 99 HOH HOH . I 4 HOH A 34 158 103 HOH HOH . I 4 HOH A 35 159 2 HOH HOH . I 4 HOH A 36 160 106 HOH HOH . I 4 HOH A 37 161 107 HOH HOH . I 4 HOH A 38 162 5 HOH HOH . I 4 HOH A 39 163 6 HOH HOH . I 4 HOH A 40 164 110 HOH HOH . I 4 HOH A 41 165 7 HOH HOH . I 4 HOH A 42 166 10 HOH HOH . I 4 HOH A 43 167 11 HOH HOH . I 4 HOH A 44 168 15 HOH HOH . I 4 HOH A 45 169 115 HOH HOH . I 4 HOH A 46 170 116 HOH HOH . I 4 HOH A 47 171 16 HOH HOH . I 4 HOH A 48 172 17 HOH HOH . I 4 HOH A 49 173 18 HOH HOH . I 4 HOH A 50 174 20 HOH HOH . I 4 HOH A 51 175 21 HOH HOH . I 4 HOH A 52 176 22 HOH HOH . I 4 HOH A 53 177 31 HOH HOH . I 4 HOH A 54 178 33 HOH HOH . I 4 HOH A 55 180 180 HOH HOH . I 4 HOH A 56 181 181 HOH HOH . I 4 HOH A 57 183 183 HOH HOH . I 4 HOH A 58 187 187 HOH HOH . I 4 HOH A 59 191 191 HOH HOH . I 4 HOH A 60 193 193 HOH HOH . I 4 HOH A 61 197 197 HOH HOH . I 4 HOH A 62 198 198 HOH HOH . J 4 HOH B 1 125 49 HOH HOH . J 4 HOH B 2 126 126 HOH HOH . J 4 HOH B 3 127 127 HOH HOH . J 4 HOH B 4 128 57 HOH HOH . J 4 HOH B 5 129 129 HOH HOH . J 4 HOH B 6 130 58 HOH HOH . J 4 HOH B 7 131 131 HOH HOH . J 4 HOH B 8 132 61 HOH HOH . J 4 HOH B 9 133 133 HOH HOH . J 4 HOH B 10 134 64 HOH HOH . J 4 HOH B 11 135 65 HOH HOH . J 4 HOH B 12 136 66 HOH HOH . J 4 HOH B 13 137 71 HOH HOH . J 4 HOH B 14 138 75 HOH HOH . J 4 HOH B 15 139 79 HOH HOH . J 4 HOH B 16 140 80 HOH HOH . J 4 HOH B 17 141 83 HOH HOH . J 4 HOH B 18 142 85 HOH HOH . J 4 HOH B 19 143 86 HOH HOH . J 4 HOH B 20 144 94 HOH HOH . J 4 HOH B 21 145 95 HOH HOH . J 4 HOH B 22 146 100 HOH HOH . J 4 HOH B 23 147 102 HOH HOH . J 4 HOH B 24 148 6 HOH HOH . J 4 HOH B 25 149 8 HOH HOH . J 4 HOH B 26 150 43 HOH HOH . J 4 HOH B 27 151 50 HOH HOH . J 4 HOH B 28 152 152 HOH HOH . J 4 HOH B 29 153 82 HOH HOH . J 4 HOH B 30 154 98 HOH HOH . J 4 HOH B 31 155 155 HOH HOH . J 4 HOH B 32 156 1 HOH HOH . J 4 HOH B 33 157 3 HOH HOH . J 4 HOH B 34 158 4 HOH HOH . J 4 HOH B 35 159 9 HOH HOH . J 4 HOH B 36 160 13 HOH HOH . J 4 HOH B 37 161 14 HOH HOH . J 4 HOH B 38 162 23 HOH HOH . J 4 HOH B 39 163 24 HOH HOH . J 4 HOH B 40 164 164 HOH HOH . J 4 HOH B 41 165 25 HOH HOH . J 4 HOH B 42 166 27 HOH HOH . J 4 HOH B 43 167 29 HOH HOH . J 4 HOH B 44 168 30 HOH HOH . J 4 HOH B 45 169 38 HOH HOH . J 4 HOH B 46 170 40 HOH HOH . J 4 HOH B 47 171 42 HOH HOH . J 4 HOH B 48 172 43 HOH HOH . J 4 HOH B 49 173 120 HOH HOH . J 4 HOH B 50 174 121 HOH HOH . J 4 HOH B 51 175 122 HOH HOH . J 4 HOH B 52 176 44 HOH HOH . J 4 HOH B 53 177 124 HOH HOH . J 4 HOH B 54 178 178 HOH HOH . J 4 HOH B 55 179 179 HOH HOH . J 4 HOH B 56 184 184 HOH HOH . J 4 HOH B 57 185 185 HOH HOH . J 4 HOH B 58 190 190 HOH HOH . J 4 HOH B 59 194 194 HOH HOH . J 4 HOH B 60 195 195 HOH HOH . J 4 HOH B 61 202 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 6.405 11.813 31.714 1 21.78 ? CHA HEM 300 A 1 HETATM 2 C CHB HEM . . . C 2 1.594 11.946 32.432 1 20.59 ? CHB HEM 300 A 1 HETATM 3 C CHC HEM . . . C 2 1.794 7.209 33.64 1 21.85 ? CHC HEM 300 A 1 HETATM 4 C CHD HEM . . . C 2 6.396 7.002 32.268 1 19.31 ? CHD HEM 300 A 1 HETATM 5 C C1A HEM . . . C 2 5.097 12.266 31.838 1 23.45 ? C1A HEM 300 A 1 HETATM 6 C C2A HEM . . . C 2 4.656 13.603 31.672 1 26.15 ? C2A HEM 300 A 1 HETATM 7 C C3A HEM . . . C 2 3.33 13.637 31.826 1 27.61 ? C3A HEM 300 A 1 HETATM 8 C C4A HEM . . . C 2 2.889 12.304 32.159 1 22.97 ? C4A HEM 300 A 1 HETATM 9 C CMA HEM . . . C 2 2.421 14.87 31.756 1 31 ? CMA HEM 300 A 1 HETATM 10 C CAA HEM . . . C 2 5.551 14.817 31.357 1 31.81 ? CAA HEM 300 A 1 HETATM 11 C CBA HEM . . . C 2 5.63 14.981 29.867 1 41.9 ? CBA HEM 300 A 1 HETATM 12 C CGA HEM . . . C 2 5.834 16.451 29.604 1 49.55 ? CGA HEM 300 A 1 HETATM 13 O O1A HEM . . . C 2 4.778 17.165 29.48 1 51.94 ? O1A HEM 300 A 1 HETATM 14 O O2A HEM . . . C 2 7.045 16.877 29.551 1 50.16 ? O2A HEM 300 A 1 HETATM 15 C C1B HEM . . . C 2 1.261 10.699 32.877 1 18.63 ? C1B HEM 300 A 1 HETATM 16 C C2B HEM . . . C 2 -0.067 10.246 33.265 1 19.89 ? C2B HEM 300 A 1 HETATM 17 C C3B HEM . . . C 2 -0.014 8.965 33.568 1 21.92 ? C3B HEM 300 A 1 HETATM 18 C C4B HEM . . . C 2 1.366 8.513 33.38 1 20.18 ? C4B HEM 300 A 1 HETATM 19 C CMB HEM . . . C 2 -1.273 11.203 33.316 1 22.58 ? CMB HEM 300 A 1 HETATM 20 C CAB HEM . . . C 2 -1.134 8.022 34.072 1 25.1 ? CAB HEM 300 A 1 HETATM 21 C CBB HEM . . . C 2 -2.393 8.145 33.7 1 32.09 ? CBB HEM 300 A 1 HETATM 22 C C1C HEM . . . C 2 3.072 6.731 33.374 1 20.38 ? C1C HEM 300 A 1 HETATM 23 C C2C HEM . . . C 2 3.514 5.391 33.509 1 20.38 ? C2C HEM 300 A 1 HETATM 24 C C3C HEM . . . C 2 4.771 5.32 33.129 1 18.02 ? C3C HEM 300 A 1 HETATM 25 C C4C HEM . . . C 2 5.17 6.683 32.761 1 18.18 ? C4C HEM 300 A 1 HETATM 26 C CMC HEM . . . C 2 2.65 4.204 34.026 1 20.51 ? CMC HEM 300 A 1 HETATM 27 C CAC HEM . . . C 2 5.696 4.093 33.032 1 20.24 ? CAC HEM 300 A 1 HETATM 28 C CBC HEM . . . C 2 5.411 2.86 33.468 1 20.9 ? CBC HEM 300 A 1 HETATM 29 C C1D HEM . . . C 2 6.829 8.279 32.036 1 19.42 ? C1D HEM 300 A 1 HETATM 30 C C2D HEM . . . C 2 8.206 8.64 31.764 1 18.88 ? C2D HEM 300 A 1 HETATM 31 C C3D HEM . . . C 2 8.187 10.102 31.613 1 18.66 ? C3D HEM 300 A 1 HETATM 32 C C4D HEM . . . C 2 6.824 10.52 31.783 1 20.83 ? C4D HEM 300 A 1 HETATM 33 C CMD HEM . . . C 2 9.43 7.7 31.633 1 20.59 ? CMD HEM 300 A 1 HETATM 34 C CAD HEM . . . C 2 9.468 10.96 31.317 1 20.85 ? CAD HEM 300 A 1 HETATM 35 C CBD HEM . . . C 2 9.962 11.475 32.663 1 28.18 ? CBD HEM 300 A 1 HETATM 36 C CGD HEM . . . C 2 11.2 12.363 32.634 1 36.25 ? CGD HEM 300 A 1 HETATM 37 O O1D HEM . . . C 2 11.991 12.265 33.636 1 37.83 ? O1D HEM 300 A 1 HETATM 38 O O2D HEM . . . C 2 11.422 13.16 31.665 1 38.39 ? O2D HEM 300 A 1 HETATM 39 N NA HEM . . . C 2 3.988 11.472 32.142 1 21.9 ? NA HEM 300 A 1 HETATM 40 N NB HEM . . . C 2 2.083 9.608 32.892 1 19.85 ? NB HEM 300 A 1 HETATM 41 N NC HEM . . . C 2 4.102 7.536 32.88 1 19.74 ? NC HEM 300 A 1 HETATM 42 N ND HEM . . . C 2 6.051 9.388 32.026 1 20.69 ? ND HEM 300 A 1 HETATM 43 FE FE HEM . . . C 2 4.101 9.539 32.699 1 21.71 ? FE HEM 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #