data_3HXB
#
_model_server_result.job_id            w6ZjR-9Wvc71TfrkFBsiBw 
_model_server_result.datetime_utc      '2025-08-31 07:19:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hxb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":332}' 
#
_entry.id    3HXB 
#
_exptl.entry_id    3HXB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              625.668 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(benzyloxy)carbonyl]-D-tyrosyl-L-phenylalanyl-L-tyrosine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HXB 
_cell.length_a            66.49 
_cell.length_b            90.61 
_cell.length_c            115.2 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HXB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C35 H35 N3 O8' 
_chem_comp.formula_weight    625.668 
_chem_comp.id                BD5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(benzyloxy)carbonyl]-D-tyrosyl-L-phenylalanyl-L-tyrosine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C43 C42 BD5 doub 70 n y 
C43 C38 BD5 sing 71 n y 
C43 H43 BD5 sing 72 n n 
C42 C41 BD5 sing 73 n y 
C42 H42 BD5 sing 74 n n 
C41 O44 BD5 sing 75 n n 
C41 C40 BD5 doub 76 n y 
O44 HO44 BD5 sing 77 n n 
C40 C39 BD5 sing 78 n y 
C40 H40 BD5 sing 79 n n 
C39 C38 BD5 doub 80 n y 
C39 H39 BD5 sing 81 n n 
C38 C37 BD5 sing 82 n n 
C37 C35 BD5 sing 83 n n 
C37 H37 BD5 sing 84 n n 
C37 H37A BD5 sing 85 n n 
C35 C36 BD5 sing 86 n n 
C35 N33 BD5 sing 87 n n 
C35 H35 BD5 sing 88 n n 
C36 O45 BD5 sing 89 n n 
C36 O46 BD5 doub 90 n n 
N33 C32 BD5 sing 91 n n 
N33 HN33 BD5 sing 92 n n 
C32 O34 BD5 doub 93 n n 
C32 C24 BD5 sing 94 n n 
C24 C25 BD5 sing 95 n n 
C24 N22 BD5 sing 96 n n 
C24 H24 BD5 sing 97 n n 
C25 C26 BD5 sing 98 n n 
C25 H25 BD5 sing 99 n n 
C25 H25A BD5 sing 100 n n 
C26 C31 BD5 doub 101 n y 
C26 C27 BD5 sing 102 n y 
C31 C30 BD5 sing 103 n y 
C31 H31 BD5 sing 104 n n 
C30 C29 BD5 doub 105 n y 
C30 H30 BD5 sing 106 n n 
C29 C28 BD5 sing 107 n y 
C29 H29 BD5 sing 108 n n 
C28 C27 BD5 doub 109 n y 
C28 H28 BD5 sing 110 n n 
C27 H27 BD5 sing 111 n n 
N22 C21 BD5 sing 112 n n 
N22 HN22 BD5 sing 113 n n 
C21 O23 BD5 doub 114 n n 
C21 C12 BD5 sing 115 n n 
C12 C13 BD5 sing 116 n n 
C12 N10 BD5 sing 117 n n 
C12 H12 BD5 sing 118 n n 
C13 C14 BD5 sing 119 n n 
C13 H13 BD5 sing 120 n n 
C13 H13A BD5 sing 121 n n 
C14 C19 BD5 doub 122 n y 
C14 C15 BD5 sing 123 n y 
C19 C18 BD5 sing 124 n y 
C19 H19 BD5 sing 125 n n 
C18 C17 BD5 doub 126 n y 
C18 H18 BD5 sing 127 n n 
C17 O20 BD5 sing 128 n n 
C17 C16 BD5 sing 129 n y 
O20 HO20 BD5 sing 130 n n 
C16 C15 BD5 doub 131 n y 
C16 H16 BD5 sing 132 n n 
C15 H15 BD5 sing 133 n n 
N10 C9 BD5 sing 134 n n 
N10 HN10 BD5 sing 135 n n 
C9 O11 BD5 doub 136 n n 
C9 O8 BD5 sing 137 n n 
O8 C7 BD5 sing 138 n n 
C7 C3 BD5 sing 139 n n 
C7 H7 BD5 sing 140 n n 
C7 H7A BD5 sing 141 n n 
C3 C2 BD5 doub 142 n y 
C3 C4 BD5 sing 143 n y 
C2 C1 BD5 sing 144 n y 
C2 H2 BD5 sing 145 n n 
C1 C6 BD5 doub 146 n y 
C1 H1 BD5 sing 147 n n 
C6 C5 BD5 sing 148 n y 
C6 H6 BD5 sing 149 n n 
C5 C4 BD5 doub 150 n y 
C5 H5 BD5 sing 151 n n 
C4 H4 BD5 sing 152 n n 
O45 H351 BD5 sing 153 n n 
#
_atom_sites.entry_id                     3HXB 
_atom_sites.fract_transf_matrix[1][1]    0.01504 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011036 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008681 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BD5 B 1 332 1 BD5 BD5 . 
D 4 ZN B 1 333 1 ZN ZN . 
E 5 HOH A 1 331 1 HOH HOH . 
E 5 HOH A 2 332 4 HOH HOH . 
E 5 HOH A 3 333 9 HOH HOH . 
E 5 HOH A 4 334 10 HOH HOH . 
E 5 HOH A 5 335 18 HOH HOH . 
E 5 HOH A 6 336 19 HOH HOH . 
E 5 HOH A 7 337 20 HOH HOH . 
E 5 HOH A 8 338 21 HOH HOH . 
E 5 HOH A 9 339 22 HOH HOH . 
E 5 HOH A 10 340 26 HOH HOH . 
E 5 HOH A 11 341 31 HOH HOH . 
E 5 HOH A 12 342 32 HOH HOH . 
E 5 HOH A 13 343 35 HOH HOH . 
E 5 HOH A 14 344 36 HOH HOH . 
E 5 HOH A 15 345 39 HOH HOH . 
E 5 HOH A 16 346 43 HOH HOH . 
E 5 HOH A 17 347 44 HOH HOH . 
E 5 HOH A 18 348 48 HOH HOH . 
E 5 HOH A 19 349 49 HOH HOH . 
E 5 HOH A 20 350 50 HOH HOH . 
E 5 HOH A 21 351 51 HOH HOH . 
E 5 HOH A 22 352 52 HOH HOH . 
E 5 HOH A 23 353 53 HOH HOH . 
E 5 HOH A 24 354 55 HOH HOH . 
E 5 HOH A 25 355 56 HOH HOH . 
E 5 HOH A 26 356 57 HOH HOH . 
E 5 HOH A 27 357 58 HOH HOH . 
E 5 HOH A 28 358 59 HOH HOH . 
E 5 HOH A 29 359 60 HOH HOH . 
E 5 HOH A 30 360 63 HOH HOH . 
E 5 HOH A 31 361 65 HOH HOH . 
E 5 HOH A 32 362 68 HOH HOH . 
E 5 HOH A 33 363 69 HOH HOH . 
E 5 HOH A 34 364 72 HOH HOH . 
E 5 HOH A 35 365 73 HOH HOH . 
E 5 HOH A 36 366 76 HOH HOH . 
E 5 HOH A 37 367 77 HOH HOH . 
E 5 HOH A 38 368 79 HOH HOH . 
E 5 HOH A 39 369 80 HOH HOH . 
E 5 HOH A 40 370 82 HOH HOH . 
E 5 HOH A 41 371 83 HOH HOH . 
E 5 HOH A 42 372 85 HOH HOH . 
E 5 HOH A 43 373 86 HOH HOH . 
E 5 HOH A 44 374 87 HOH HOH . 
E 5 HOH A 45 375 88 HOH HOH . 
E 5 HOH A 46 376 89 HOH HOH . 
E 5 HOH A 47 377 92 HOH HOH . 
E 5 HOH A 48 378 95 HOH HOH . 
E 5 HOH A 49 379 96 HOH HOH . 
E 5 HOH A 50 380 97 HOH HOH . 
E 5 HOH A 51 381 98 HOH HOH . 
E 5 HOH A 52 382 99 HOH HOH . 
E 5 HOH A 53 383 106 HOH HOH . 
E 5 HOH A 54 384 113 HOH HOH . 
E 5 HOH A 55 385 114 HOH HOH . 
E 5 HOH A 56 386 115 HOH HOH . 
E 5 HOH A 57 387 116 HOH HOH . 
E 5 HOH A 58 388 119 HOH HOH . 
E 5 HOH A 59 389 121 HOH HOH . 
E 5 HOH A 60 390 122 HOH HOH . 
F 5 HOH B 1 334 2 HOH HOH . 
F 5 HOH B 2 335 3 HOH HOH . 
F 5 HOH B 3 336 5 HOH HOH . 
F 5 HOH B 4 337 6 HOH HOH . 
F 5 HOH B 5 338 7 HOH HOH . 
F 5 HOH B 6 339 8 HOH HOH . 
F 5 HOH B 7 340 11 HOH HOH . 
F 5 HOH B 8 341 12 HOH HOH . 
F 5 HOH B 9 342 13 HOH HOH . 
F 5 HOH B 10 343 14 HOH HOH . 
F 5 HOH B 11 344 15 HOH HOH . 
F 5 HOH B 12 345 16 HOH HOH . 
F 5 HOH B 13 346 17 HOH HOH . 
F 5 HOH B 14 347 23 HOH HOH . 
F 5 HOH B 15 348 24 HOH HOH . 
F 5 HOH B 16 349 25 HOH HOH . 
F 5 HOH B 17 350 27 HOH HOH . 
F 5 HOH B 18 351 28 HOH HOH . 
F 5 HOH B 19 352 29 HOH HOH . 
F 5 HOH B 20 353 30 HOH HOH . 
F 5 HOH B 21 354 33 HOH HOH . 
F 5 HOH B 22 355 34 HOH HOH . 
F 5 HOH B 23 356 37 HOH HOH . 
F 5 HOH B 24 357 38 HOH HOH . 
F 5 HOH B 25 358 40 HOH HOH . 
F 5 HOH B 26 359 41 HOH HOH . 
F 5 HOH B 27 360 42 HOH HOH . 
F 5 HOH B 28 361 45 HOH HOH . 
F 5 HOH B 29 362 46 HOH HOH . 
F 5 HOH B 30 363 47 HOH HOH . 
F 5 HOH B 31 364 54 HOH HOH . 
F 5 HOH B 32 365 61 HOH HOH . 
F 5 HOH B 33 366 62 HOH HOH . 
F 5 HOH B 34 367 64 HOH HOH . 
F 5 HOH B 35 368 66 HOH HOH . 
F 5 HOH B 36 369 67 HOH HOH . 
F 5 HOH B 37 370 70 HOH HOH . 
F 5 HOH B 38 371 71 HOH HOH . 
F 5 HOH B 39 372 74 HOH HOH . 
F 5 HOH B 40 373 75 HOH HOH . 
F 5 HOH B 41 374 78 HOH HOH . 
F 5 HOH B 42 375 81 HOH HOH . 
F 5 HOH B 43 376 84 HOH HOH . 
F 5 HOH B 44 377 90 HOH HOH . 
F 5 HOH B 45 378 91 HOH HOH . 
F 5 HOH B 46 379 93 HOH HOH . 
F 5 HOH B 47 380 94 HOH HOH . 
F 5 HOH B 48 381 100 HOH HOH . 
F 5 HOH B 49 382 101 HOH HOH . 
F 5 HOH B 50 383 102 HOH HOH . 
F 5 HOH B 51 384 103 HOH HOH . 
F 5 HOH B 52 385 104 HOH HOH . 
F 5 HOH B 53 386 105 HOH HOH . 
F 5 HOH B 54 387 107 HOH HOH . 
F 5 HOH B 55 388 108 HOH HOH . 
F 5 HOH B 56 389 109 HOH HOH . 
F 5 HOH B 57 390 110 HOH HOH . 
F 5 HOH B 58 391 111 HOH HOH . 
F 5 HOH B 59 392 112 HOH HOH . 
F 5 HOH B 60 393 117 HOH HOH . 
F 5 HOH B 61 394 118 HOH HOH . 
F 5 HOH B 62 395 120 HOH HOH . 
F 5 HOH B 63 396 123 HOH HOH . 
F 5 HOH B 64 397 124 HOH HOH . 
F 5 HOH B 65 398 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C43 BD5 . . . C 3 5.844 18.88 27.391 1 118.8 ? C43 BD5 332 B 1 
HETATM 2 C C42 BD5 . . . C 3 5.35 20.185 27.365 1 116.89 ? C42 BD5 332 B 1 
HETATM 3 C C41 BD5 . . . C 3 3.985 20.419 27.206 1 117.03 ? C41 BD5 332 B 1 
HETATM 4 O O44 BD5 . . . C 3 3.507 21.693 27.179 1 118.16 ? O44 BD5 332 B 1 
HETATM 5 C C40 BD5 . . . C 3 3.114 19.34 27.074 1 116.69 ? C40 BD5 332 B 1 
HETATM 6 C C39 BD5 . . . C 3 3.6 18.032 27.101 1 118.48 ? C39 BD5 332 B 1 
HETATM 7 C C38 BD5 . . . C 3 4.969 17.797 27.251 1 120.59 ? C38 BD5 332 B 1 
HETATM 8 C C37 BD5 . . . C 3 5.497 16.353 27.292 1 124.12 ? C37 BD5 332 B 1 
HETATM 9 C C35 BD5 . . . C 3 5.882 15.693 25.936 1 124.45 ? C35 BD5 332 B 1 
HETATM 10 C C36 BD5 . . . C 3 4.903 14.558 25.546 1 128.64 ? C36 BD5 332 B 1 
HETATM 11 O O45 BD5 . . . C 3 4.314 14.649 24.438 1 127.46 ? O45 BD5 332 B 1 
HETATM 12 O O46 BD5 . . . C 3 4.777 13.611 26.351 1 134.12 ? O46 BD5 332 B 1 
HETATM 13 N N33 BD5 . . . C 3 5.931 16.596 24.769 1 114.19 ? N33 BD5 332 B 1 
HETATM 14 C C32 BD5 . . . C 3 7.05 16.851 24.099 1 105.01 ? C32 BD5 332 B 1 
HETATM 15 O O34 BD5 . . . C 3 8.147 16.368 24.378 1 108.28 ? O34 BD5 332 B 1 
HETATM 16 C C24 BD5 . . . C 3 6.834 17.759 22.868 1 93.74 ? C24 BD5 332 B 1 
HETATM 17 C C25 BD5 . . . C 3 7.66 17.206 21.639 1 95.84 ? C25 BD5 332 B 1 
HETATM 18 C C26 BD5 . . . C 3 7.91 18.214 20.491 1 95.06 ? C26 BD5 332 B 1 
HETATM 19 C C31 BD5 . . . C 3 9.091 18.158 19.77 1 97.03 ? C31 BD5 332 B 1 
HETATM 20 C C30 BD5 . . . C 3 9.311 19.079 18.756 1 97.03 ? C30 BD5 332 B 1 
HETATM 21 C C29 BD5 . . . C 3 8.384 20.059 18.433 1 95.72 ? C29 BD5 332 B 1 
HETATM 22 C C28 BD5 . . . C 3 7.199 20.125 19.136 1 94.13 ? C28 BD5 332 B 1 
HETATM 23 C C27 BD5 . . . C 3 6.986 19.2 20.147 1 93.41 ? C27 BD5 332 B 1 
HETATM 24 N N22 BD5 . . . C 3 6.877 19.24 23.043 1 83.39 ? N22 BD5 332 B 1 
HETATM 25 C C21 BD5 . . . C 3 5.817 19.918 23.532 1 75.88 ? C21 BD5 332 B 1 
HETATM 26 O O23 BD5 . . . C 3 4.765 19.378 23.9 1 74.39 ? O23 BD5 332 B 1 
HETATM 27 C C12 BD5 . . . C 3 5.89 21.481 23.54 1 71.96 ? C12 BD5 332 B 1 
HETATM 28 C C13 BD5 . . . C 3 5.822 22.245 24.914 1 66.31 ? C13 BD5 332 B 1 
HETATM 29 C C14 BD5 . . . C 3 6.243 23.724 24.735 1 63.91 ? C14 BD5 332 B 1 
HETATM 30 C C19 BD5 . . . C 3 7.133 24.275 25.667 1 64.6 ? C19 BD5 332 B 1 
HETATM 31 C C18 BD5 . . . C 3 7.548 25.597 25.525 1 64.85 ? C18 BD5 332 B 1 
HETATM 32 C C17 BD5 . . . C 3 7.095 26.367 24.451 1 63.85 ? C17 BD5 332 B 1 
HETATM 33 O O20 BD5 . . . C 3 7.525 27.635 24.346 1 65.54 ? O20 BD5 332 B 1 
HETATM 34 C C16 BD5 . . . C 3 6.227 25.835 23.499 1 62.75 ? C16 BD5 332 B 1 
HETATM 35 C C15 BD5 . . . C 3 5.801 24.51 23.647 1 62.55 ? C15 BD5 332 B 1 
HETATM 36 N N10 BD5 . . . C 3 6.82 22.039 22.472 1 71.54 ? N10 BD5 332 B 1 
HETATM 37 C C9 BD5 . . . C 3 8.137 22.361 22.473 1 69.68 ? C9 BD5 332 B 1 
HETATM 38 O O11 BD5 . . . C 3 8.952 22.217 23.384 1 67.05 ? O11 BD5 332 B 1 
HETATM 39 O O8 BD5 . . . C 3 8.606 22.866 21.284 1 71.72 ? O8 BD5 332 B 1 
HETATM 40 C C7 BD5 . . . C 3 8.588 24.282 21.043 1 71.34 ? C7 BD5 332 B 1 
HETATM 41 C C3 BD5 . . . C 3 7.736 24.856 20.119 1 73.64 ? C3 BD5 332 B 1 
HETATM 42 C C2 BD5 . . . C 3 6.738 24.074 19.518 1 76.01 ? C2 BD5 332 B 1 
HETATM 43 C C1 BD5 . . . C 3 5.854 24.62 18.586 1 80.72 ? C1 BD5 332 B 1 
HETATM 44 C C6 BD5 . . . C 3 5.986 25.971 18.273 1 82.68 ? C6 BD5 332 B 1 
HETATM 45 C C5 BD5 . . . C 3 6.985 26.749 18.88 1 82.4 ? C5 BD5 332 B 1 
HETATM 46 C C4 BD5 . . . C 3 7.88 26.212 19.81 1 74.11 ? C4 BD5 332 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           46 
#