data_3HXG # _model_server_result.job_id 4JcJB47aPUC47XYnyH2OzQ _model_server_result.datetime_utc '2024-11-05 04:05:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hxg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3HXG # _exptl.entry_id 3HXG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HXG _cell.length_a 45.56 _cell.length_b 125.4 _cell.length_c 37.34 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HXG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N10 O17 P3 1' _chem_comp.formula_weight 787.441 _chem_comp.id GTA _chem_comp.mon_nstd_flag . _chem_comp.name "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-METHYL-GPPPA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C2 GTA sing 129 n n N2 HN21 GTA sing 130 n n N2 HN22 GTA sing 131 n n O6 C6 GTA doub 132 n n C6 C5 GTA sing 133 n n C6 N1 GTA sing 134 n n C5 N7 GTA sing 135 n y C5 C4 GTA doub 136 n y N7 C7 GTA sing 137 n n N7 C8 GTA doub 138 n y C7 H71 GTA sing 139 n n C7 H72 GTA sing 140 n n C7 H73 GTA sing 141 n n C8 N9 GTA sing 142 n y C8 H8 GTA sing 143 n n N9 C4 GTA sing 144 n y N9 C1A GTA sing 145 n n C4 N3 GTA sing 146 n n N3 C2 GTA doub 147 n n C2 N1 GTA sing 148 n n N1 HN1 GTA sing 149 n n O3A C3A GTA sing 150 n n O3A HO3A GTA sing 151 n n C1A C2A GTA sing 152 n n C1A O4A GTA sing 153 n n C1A H1A GTA sing 154 n n C2A C3A GTA sing 155 n n C2A O2A GTA sing 156 n n C2A H2A GTA sing 157 n n C3A C4A GTA sing 158 n n C3A H3A GTA sing 159 n n C4A C5A GTA sing 160 n n C4A O4A GTA sing 161 n n C4A H4A GTA sing 162 n n C5A O15 GTA sing 163 n n C5A H5A1 GTA sing 164 n n C5A H5A2 GTA sing 165 n n O2A HO2A GTA sing 166 n n P1 O11 GTA doub 167 n n P1 O12 GTA sing 168 n n P1 O13 GTA sing 169 n n P1 O15 GTA sing 170 n n O12 H122 GTA sing 171 n n O13 P2 GTA sing 172 n n P2 O22 GTA sing 173 n n P2 O21 GTA doub 174 n n P2 O23 GTA sing 175 n n O22 H222 GTA sing 176 n n O23 P3 GTA sing 177 n n P3 O32 GTA sing 178 n n P3 O31 GTA doub 179 n n P3 O33 GTA sing 180 n n O32 H322 GTA sing 181 n n O33 C5B GTA sing 182 n n C5B C4B GTA sing 183 n n C5B H5B1 GTA sing 184 n n C5B H5B2 GTA sing 185 n n C4B O4B GTA sing 186 n n C4B C3B GTA sing 187 n n C4B H4B GTA sing 188 n n O4B C1B GTA sing 189 n n C3B O3B GTA sing 190 n n C3B C2B GTA sing 191 n n C3B H3B GTA sing 192 n n O3B HO3B GTA sing 193 n n C2B O2B GTA sing 194 n n C2B C1B GTA sing 195 n n C2B H2B GTA sing 196 n n O2B HO2B GTA sing 197 n n C1B N9C GTA sing 198 n n C1B H1B GTA sing 199 n n N9C C8C GTA sing 200 n y N9C C4C GTA sing 201 n y C8C N7C GTA doub 202 n y C8C H8C GTA sing 203 n n N7C C5C GTA sing 204 n y C5C C6C GTA doub 205 n y C5C C4C GTA sing 206 n y C6C N6C GTA sing 207 n n C6C N1C GTA sing 208 n y N6C HN61 GTA sing 209 n n N6C HN62 GTA sing 210 n n N1C C2C GTA doub 211 n y C2C N3C GTA sing 212 n y C2C H2C GTA sing 213 n n N3C C4C GTA doub 214 n y # _atom_sites.entry_id 3HXG _atom_sites.fract_transf_matrix[1][1] 0.021949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTA A 1 1 1 GTA GTA . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 6 6 HOH HOH . D 4 HOH A 6 7 7 HOH HOH . D 4 HOH A 7 8 8 HOH HOH . D 4 HOH A 8 10 10 HOH HOH . D 4 HOH A 9 11 11 HOH HOH . D 4 HOH A 10 12 12 HOH HOH . D 4 HOH A 11 13 13 HOH HOH . D 4 HOH A 12 14 14 HOH HOH . D 4 HOH A 13 204 1 HOH HOH . D 4 HOH A 14 205 15 HOH HOH . D 4 HOH A 15 206 17 HOH HOH . D 4 HOH A 16 207 19 HOH HOH . D 4 HOH A 17 208 20 HOH HOH . D 4 HOH A 18 209 21 HOH HOH . D 4 HOH A 19 210 22 HOH HOH . D 4 HOH A 20 211 23 HOH HOH . D 4 HOH A 21 212 26 HOH HOH . D 4 HOH A 22 213 28 HOH HOH . D 4 HOH A 23 214 29 HOH HOH . D 4 HOH A 24 215 30 HOH HOH . D 4 HOH A 25 216 31 HOH HOH . D 4 HOH A 26 217 32 HOH HOH . D 4 HOH A 27 218 33 HOH HOH . D 4 HOH A 28 219 34 HOH HOH . D 4 HOH A 29 220 36 HOH HOH . D 4 HOH A 30 221 38 HOH HOH . D 4 HOH A 31 222 39 HOH HOH . D 4 HOH A 32 223 40 HOH HOH . D 4 HOH A 33 224 41 HOH HOH . D 4 HOH A 34 225 42 HOH HOH . D 4 HOH A 35 226 43 HOH HOH . D 4 HOH A 36 227 44 HOH HOH . D 4 HOH A 37 228 45 HOH HOH . D 4 HOH A 38 229 48 HOH HOH . D 4 HOH A 39 230 49 HOH HOH . D 4 HOH A 40 231 50 HOH HOH . D 4 HOH A 41 232 51 HOH HOH . D 4 HOH A 42 233 52 HOH HOH . D 4 HOH A 43 234 53 HOH HOH . D 4 HOH A 44 235 54 HOH HOH . D 4 HOH A 45 236 55 HOH HOH . D 4 HOH A 46 237 57 HOH HOH . D 4 HOH A 47 238 59 HOH HOH . D 4 HOH A 48 239 61 HOH HOH . D 4 HOH A 49 240 62 HOH HOH . D 4 HOH A 50 241 63 HOH HOH . D 4 HOH A 51 242 64 HOH HOH . D 4 HOH A 52 243 65 HOH HOH . D 4 HOH A 53 244 66 HOH HOH . D 4 HOH A 54 245 67 HOH HOH . D 4 HOH A 55 246 69 HOH HOH . D 4 HOH A 56 247 71 HOH HOH . D 4 HOH A 57 248 72 HOH HOH . D 4 HOH A 58 249 73 HOH HOH . D 4 HOH A 59 250 74 HOH HOH . D 4 HOH A 60 251 75 HOH HOH . D 4 HOH A 61 252 86 HOH HOH . D 4 HOH A 62 253 89 HOH HOH . D 4 HOH A 63 254 90 HOH HOH . D 4 HOH A 64 255 92 HOH HOH . D 4 HOH A 65 256 93 HOH HOH . D 4 HOH A 66 257 102 HOH HOH . D 4 HOH A 67 258 103 HOH HOH . D 4 HOH A 68 259 106 HOH HOH . D 4 HOH A 69 260 107 HOH HOH . D 4 HOH A 70 261 110 HOH HOH . D 4 HOH A 71 262 111 HOH HOH . D 4 HOH A 72 263 112 HOH HOH . D 4 HOH A 73 264 113 HOH HOH . D 4 HOH A 74 265 118 HOH HOH . D 4 HOH A 75 266 119 HOH HOH . D 4 HOH A 76 267 121 HOH HOH . D 4 HOH A 77 268 123 HOH HOH . D 4 HOH A 78 269 124 HOH HOH . D 4 HOH A 79 270 125 HOH HOH . D 4 HOH A 80 271 126 HOH HOH . D 4 HOH A 81 272 129 HOH HOH . D 4 HOH A 82 273 131 HOH HOH . D 4 HOH A 83 274 133 HOH HOH . D 4 HOH A 84 275 134 HOH HOH . D 4 HOH A 85 276 166 HOH HOH . D 4 HOH A 86 277 171 HOH HOH . D 4 HOH A 87 278 188 HOH HOH . D 4 HOH A 88 279 189 HOH HOH . D 4 HOH A 89 280 1 HOH HOH . D 4 HOH A 90 281 5 HOH HOH . D 4 HOH A 91 282 6 HOH HOH . D 4 HOH A 92 283 10 HOH HOH . D 4 HOH A 93 284 11 HOH HOH . D 4 HOH A 94 285 12 HOH HOH . D 4 HOH A 95 286 16 HOH HOH . D 4 HOH A 96 287 19 HOH HOH . D 4 HOH A 97 288 21 HOH HOH . D 4 HOH A 98 289 22 HOH HOH . D 4 HOH A 99 290 25 HOH HOH . D 4 HOH A 100 291 30 HOH HOH . D 4 HOH A 101 292 31 HOH HOH . D 4 HOH A 102 293 37 HOH HOH . D 4 HOH A 103 294 39 HOH HOH . D 4 HOH A 104 295 41 HOH HOH . D 4 HOH A 105 296 49 HOH HOH . D 4 HOH A 106 297 60 HOH HOH . D 4 HOH A 107 298 62 HOH HOH . E 4 HOH C 1 22 16 HOH HOH . E 4 HOH C 2 23 8 HOH HOH . E 4 HOH C 3 36 36 HOH HOH . E 4 HOH C 4 46 46 HOH HOH . E 4 HOH C 5 77 77 HOH HOH . E 4 HOH C 6 99 99 HOH HOH . E 4 HOH C 7 117 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 GTA . . . C 3 35.031 28.32 0.667 1 15.74 ? N2 GTA 1 A 1 HETATM 2 O O6 GTA . . . C 3 31.502 26.149 2.578 1 15.43 ? O6 GTA 1 A 1 HETATM 3 C C6 GTA . . . C 3 32.674 26.076 2.137 1 15.69 ? C6 GTA 1 A 1 HETATM 4 C C5 GTA . . . C 3 33.435 24.909 2.15 1 14.49 ? C5 GTA 1 A 1 HETATM 5 N N7 GTA . . . C 3 33.15 23.674 2.584 1 17 ? N7 GTA 1 A 1 HETATM 6 C C7 GTA . . . C 3 31.889 23.175 3.197 1 15.52 ? C7 GTA 1 A 1 HETATM 7 C C8 GTA . . . C 3 34.253 22.92 2.371 1 14.52 ? C8 GTA 1 A 1 HETATM 8 N N9 GTA . . . C 3 35.213 23.68 1.809 1 16.53 ? N9 GTA 1 A 1 HETATM 9 C C4 GTA . . . C 3 34.727 24.912 1.665 1 15.58 ? C4 GTA 1 A 1 HETATM 10 N N3 GTA . . . C 3 35.246 26.058 1.176 1 16.84 ? N3 GTA 1 A 1 HETATM 11 C C2 GTA . . . C 3 34.499 27.185 1.165 1 16.1 ? C2 GTA 1 A 1 HETATM 12 N N1 GTA . . . C 3 33.246 27.188 1.639 1 16.71 ? N1 GTA 1 A 1 HETATM 13 O O3A GTA . . . C 3 38.9 22.078 3.941 1 17.33 ? O3A GTA 1 A 1 HETATM 14 C C1A GTA . . . C 3 36.584 23.259 1.412 1 15.63 ? C1A GTA 1 A 1 HETATM 15 C C2A GTA . . . C 3 37.554 23.551 2.548 1 17.94 ? C2A GTA 1 A 1 HETATM 16 C C3A GTA . . . C 3 37.681 22.214 3.227 1 15.3 ? C3A GTA 1 A 1 HETATM 17 C C4A GTA . . . C 3 37.618 21.276 2.044 1 16.85 ? C4A GTA 1 A 1 HETATM 18 C C5A GTA . . . C 3 37.213 19.875 2.427 1 15.68 ? C5A GTA 1 A 1 HETATM 19 O O4A GTA . . . C 3 36.631 21.85 1.191 1 15.04 ? O4A GTA 1 A 1 HETATM 20 O O2A GTA . . . C 3 38.825 23.998 2.025 1 17.59 ? O2A GTA 1 A 1 HETATM 21 P P1 GTA . . . C 3 35.23 18.597 3.49 1 16.82 ? P1 GTA 1 A 1 HETATM 22 O O11 GTA . . . C 3 34.086 18.973 4.41 1 19.71 ? O11 GTA 1 A 1 HETATM 23 O O12 GTA . . . C 3 34.958 17.933 2.172 1 16.34 ? O12 GTA 1 A 1 HETATM 24 O O13 GTA . . . C 3 36.314 17.82 4.374 1 19.53 ? O13 GTA 1 A 1 HETATM 25 O O15 GTA . . . C 3 36.012 19.956 3.177 1 18.24 ? O15 GTA 1 A 1 HETATM 26 P P2 GTA . . . C 3 36.974 16.393 4.067 1 21.56 ? P2 GTA 1 A 1 HETATM 27 O O22 GTA . . . C 3 38.121 16.275 5.05 1 21.62 ? O22 GTA 1 A 1 HETATM 28 O O21 GTA . . . C 3 35.862 15.361 4.045 1 20.15 ? O21 GTA 1 A 1 HETATM 29 O O23 GTA . . . C 3 37.637 16.608 2.618 1 21.54 ? O23 GTA 1 A 1 HETATM 30 P P3 GTA . . . C 3 38.419 15.486 1.763 1 19.78 ? P3 GTA 1 A 1 HETATM 31 O O32 GTA . . . C 3 39.876 15.864 1.793 1 20.36 ? O32 GTA 1 A 1 HETATM 32 O O31 GTA . . . C 3 38.024 14.074 2.093 1 19.84 ? O31 GTA 1 A 1 HETATM 33 O O33 GTA . . . C 3 37.837 15.791 0.286 1 19.44 ? O33 GTA 1 A 1 HETATM 34 C C5B GTA . . . C 3 36.474 15.537 -0.071 1 18.14 ? C5B GTA 1 A 1 HETATM 35 C C4B GTA . . . C 3 36.197 15.985 -1.508 1 17.6 ? C4B GTA 1 A 1 HETATM 36 O O4B GTA . . . C 3 36.342 17.402 -1.611 1 15.34 ? O4B GTA 1 A 1 HETATM 37 C C3B GTA . . . C 3 37.163 15.409 -2.533 1 18.56 ? C3B GTA 1 A 1 HETATM 38 O O3B GTA . . . C 3 36.427 15.263 -3.755 1 21.07 ? O3B GTA 1 A 1 HETATM 39 C C2B GTA . . . C 3 38.236 16.473 -2.707 1 17.97 ? C2B GTA 1 A 1 HETATM 40 O O2B GTA . . . C 3 38.821 16.444 -4.017 1 19.7 ? O2B GTA 1 A 1 HETATM 41 C C1B GTA . . . C 3 37.424 17.736 -2.493 1 18.17 ? C1B GTA 1 A 1 HETATM 42 N N9C GTA . . . C 3 38.147 18.862 -1.868 1 17.82 ? N9C GTA 1 A 1 HETATM 43 C C8C GTA . . . C 3 38.795 18.847 -0.686 1 18.26 ? C8C GTA 1 A 1 HETATM 44 N N7C GTA . . . C 3 39.317 20.059 -0.414 1 18.13 ? N7C GTA 1 A 1 HETATM 45 C C5C GTA . . . C 3 38.961 20.877 -1.425 1 17.77 ? C5C GTA 1 A 1 HETATM 46 C C6C GTA . . . C 3 39.17 22.294 -1.765 1 17.19 ? C6C GTA 1 A 1 HETATM 47 N N6C GTA . . . C 3 39.885 23.099 -0.941 1 19.04 ? N6C GTA 1 A 1 HETATM 48 N N1C GTA . . . C 3 38.636 22.742 -2.927 1 19.21 ? N1C GTA 1 A 1 HETATM 49 C C2C GTA . . . C 3 37.933 21.946 -3.766 1 17 ? C2C GTA 1 A 1 HETATM 50 N N3C GTA . . . C 3 37.705 20.651 -3.515 1 16.91 ? N3C GTA 1 A 1 HETATM 51 C C4C GTA . . . C 3 38.192 20.078 -2.384 1 16.51 ? C4C GTA 1 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 51 #