data_3HXI # _model_server_result.job_id 4PrWgAhJMprpi6fMTZoUdA _model_server_result.datetime_utc '2024-11-04 20:37:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3HXI # _exptl.entry_id 3HXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 803.44 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HXI _cell.length_a 45.311 _cell.length_b 125.33 _cell.length_c 37.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N10 O18 P3 1' _chem_comp.formula_weight 803.44 _chem_comp.id GTG _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MRNA CAP ANALOG N7-METHYL GPPPG' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A GTG doub 129 n n PA O2A GTG sing 130 n n PA O3A GTG sing 131 n n PA O5D GTG sing 132 n n O2A HOA2 GTG sing 133 n n O3A PB GTG sing 134 n n PB O1B GTG doub 135 n n PB O2B GTG sing 136 n n PB O3B GTG sing 137 n n O2B HOB2 GTG sing 138 n n O3B PG GTG sing 139 n n N9A C8A GTG sing 140 n y N9A C4A GTG sing 141 n y N9A C1D GTG sing 142 n n C8A N7A GTG doub 143 n y C8A H8 GTG sing 144 n n N7A C7X GTG sing 145 n n N7A C5A GTG sing 146 n y C7X HC71 GTG sing 147 n n C7X HC72 GTG sing 148 n n C7X HC73 GTG sing 149 n n C5A C6A GTG sing 150 n n C5A C4A GTG doub 151 n y C6A O6A GTG doub 152 n n C6A N1A GTG sing 153 n n N1A C2A GTG sing 154 n n N1A HN1 GTG sing 155 n n C2A N2A GTG sing 156 n n C2A N3A GTG doub 157 n n N2A HN21 GTG sing 158 n n N2A HN22 GTG sing 159 n n N3A C4A GTG sing 160 n n O5D C5D GTG sing 161 n n C5D C4D GTG sing 162 n n C5D "H5'1" GTG sing 163 n n C5D "H5'2" GTG sing 164 n n C4D O4D GTG sing 165 n n C4D C3D GTG sing 166 n n C4D H4' GTG sing 167 n n O4D C1D GTG sing 168 n n C3D O3D GTG sing 169 n n C3D C2D GTG sing 170 n n C3D H3' GTG sing 171 n n O3D HO3' GTG sing 172 n n C2D O2D GTG sing 173 n n C2D C1D GTG sing 174 n n C2D H2' GTG sing 175 n n O2D HO2' GTG sing 176 n n C1D H1' GTG sing 177 n n PG O1G GTG doub 178 n n PG O2G GTG sing 179 n n PG O5E GTG sing 180 n n O2G HOG2 GTG sing 181 n n O5E C5E GTG sing 182 n n C5E C4E GTG sing 183 n n C5E H5B1 GTG sing 184 n n C5E H5B2 GTG sing 185 n n C4E O4E GTG sing 186 n n C4E C3E GTG sing 187 n n C4E H4B GTG sing 188 n n O4E C1E GTG sing 189 n n C3E O3E GTG sing 190 n n C3E C2E GTG sing 191 n n C3E H3B GTG sing 192 n n O3E H3BO GTG sing 193 n n C2E O2E GTG sing 194 n n C2E C1E GTG sing 195 n n C2E H2B GTG sing 196 n n O2E H2BO GTG sing 197 n n C1E N9B GTG sing 198 n n C1E H1B GTG sing 199 n n N9B C8B GTG sing 200 n y N9B C4B GTG sing 201 n y C8B N7B GTG doub 202 n y C8B H8B GTG sing 203 n n N7B C5B GTG sing 204 n y C5B C6B GTG sing 205 n n C5B C4B GTG doub 206 n y C6B O6B GTG doub 207 n n C6B N1B GTG sing 208 n n N1B C2B GTG sing 209 n n N1B H1BN GTG sing 210 n n C2B N2B GTG sing 211 n n C2B N3B GTG doub 212 n n N2B H2B1 GTG sing 213 n n N2B H2B2 GTG sing 214 n n N3B C4B GTG sing 215 n n # _atom_sites.entry_id 3HXI _atom_sites.fract_transf_matrix[1][1] 0.02207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007979 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTG A 1 501 501 GTG GTG . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 6 6 HOH HOH . D 4 HOH A 6 7 7 HOH HOH . D 4 HOH A 7 8 8 HOH HOH . D 4 HOH A 8 10 10 HOH HOH . D 4 HOH A 9 11 11 HOH HOH . D 4 HOH A 10 12 12 HOH HOH . D 4 HOH A 11 13 13 HOH HOH . D 4 HOH A 12 14 14 HOH HOH . D 4 HOH A 13 204 15 HOH HOH . D 4 HOH A 14 205 16 HOH HOH . D 4 HOH A 15 206 17 HOH HOH . D 4 HOH A 16 207 18 HOH HOH . D 4 HOH A 17 208 19 HOH HOH . D 4 HOH A 18 209 21 HOH HOH . D 4 HOH A 19 210 22 HOH HOH . D 4 HOH A 20 211 23 HOH HOH . D 4 HOH A 21 212 24 HOH HOH . D 4 HOH A 22 213 25 HOH HOH . D 4 HOH A 23 214 26 HOH HOH . D 4 HOH A 24 215 28 HOH HOH . D 4 HOH A 25 216 29 HOH HOH . D 4 HOH A 26 217 30 HOH HOH . D 4 HOH A 27 218 31 HOH HOH . D 4 HOH A 28 219 32 HOH HOH . D 4 HOH A 29 220 33 HOH HOH . D 4 HOH A 30 221 34 HOH HOH . D 4 HOH A 31 222 35 HOH HOH . D 4 HOH A 32 223 38 HOH HOH . D 4 HOH A 33 224 41 HOH HOH . D 4 HOH A 34 225 42 HOH HOH . D 4 HOH A 35 226 43 HOH HOH . D 4 HOH A 36 227 44 HOH HOH . D 4 HOH A 37 228 45 HOH HOH . D 4 HOH A 38 229 47 HOH HOH . D 4 HOH A 39 230 48 HOH HOH . D 4 HOH A 40 231 50 HOH HOH . D 4 HOH A 41 232 51 HOH HOH . D 4 HOH A 42 233 52 HOH HOH . D 4 HOH A 43 234 53 HOH HOH . D 4 HOH A 44 235 54 HOH HOH . D 4 HOH A 45 236 55 HOH HOH . D 4 HOH A 46 237 56 HOH HOH . D 4 HOH A 47 238 57 HOH HOH . D 4 HOH A 48 239 58 HOH HOH . D 4 HOH A 49 240 61 HOH HOH . D 4 HOH A 50 241 63 HOH HOH . D 4 HOH A 51 242 64 HOH HOH . D 4 HOH A 52 243 65 HOH HOH . D 4 HOH A 53 244 67 HOH HOH . D 4 HOH A 54 245 69 HOH HOH . D 4 HOH A 55 246 70 HOH HOH . D 4 HOH A 56 247 71 HOH HOH . D 4 HOH A 57 248 73 HOH HOH . D 4 HOH A 58 249 74 HOH HOH . D 4 HOH A 59 250 78 HOH HOH . D 4 HOH A 60 251 86 HOH HOH . D 4 HOH A 61 252 95 HOH HOH . D 4 HOH A 62 253 105 HOH HOH . D 4 HOH A 63 254 116 HOH HOH . D 4 HOH A 64 255 7 HOH HOH . D 4 HOH A 65 256 12 HOH HOH . D 4 HOH A 66 257 16 HOH HOH . D 4 HOH A 67 258 17 HOH HOH . D 4 HOH A 68 259 19 HOH HOH . D 4 HOH A 69 260 20 HOH HOH . D 4 HOH A 70 261 21 HOH HOH . D 4 HOH A 71 262 22 HOH HOH . D 4 HOH A 72 263 25 HOH HOH . D 4 HOH A 73 264 26 HOH HOH . D 4 HOH A 74 265 28 HOH HOH . D 4 HOH A 75 266 30 HOH HOH . D 4 HOH A 76 267 33 HOH HOH . D 4 HOH A 77 268 35 HOH HOH . D 4 HOH A 78 269 37 HOH HOH . D 4 HOH A 79 270 38 HOH HOH . D 4 HOH A 80 271 43 HOH HOH . D 4 HOH A 81 272 44 HOH HOH . D 4 HOH A 82 273 45 HOH HOH . D 4 HOH A 83 274 47 HOH HOH . D 4 HOH A 84 275 52 HOH HOH . D 4 HOH A 85 276 56 HOH HOH . D 4 HOH A 86 277 62 HOH HOH . D 4 HOH A 87 278 71 HOH HOH . D 4 HOH A 88 279 79 HOH HOH . D 4 HOH A 89 280 81 HOH HOH . D 4 HOH A 90 281 93 HOH HOH . D 4 HOH A 91 282 94 HOH HOH . D 4 HOH A 92 283 98 HOH HOH . D 4 HOH A 93 284 99 HOH HOH . D 4 HOH A 94 285 100 HOH HOH . D 4 HOH A 95 286 102 HOH HOH . D 4 HOH A 96 287 114 HOH HOH . D 4 HOH A 97 288 115 HOH HOH . D 4 HOH A 98 289 117 HOH HOH . D 4 HOH A 99 290 72 HOH HOH . E 4 HOH C 1 23 23 HOH HOH . E 4 HOH C 2 27 27 HOH HOH . E 4 HOH C 3 28 6 HOH HOH . E 4 HOH C 4 29 29 HOH HOH . E 4 HOH C 5 36 36 HOH HOH . E 4 HOH C 6 37 37 HOH HOH . E 4 HOH C 7 60 60 HOH HOH . E 4 HOH C 8 62 62 HOH HOH . E 4 HOH C 9 68 68 HOH HOH . E 4 HOH C 10 80 80 HOH HOH . E 4 HOH C 11 85 85 HOH HOH . E 4 HOH C 12 96 96 HOH HOH . E 4 HOH C 13 116 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA GTG . . . C 3 35.061 18.607 3.412 1 21.25 ? PA GTG 501 A 1 HETATM 2 O O1A GTG . . . C 3 34.737 17.935 2.105 1 20.05 ? O1A GTG 501 A 1 HETATM 3 O O2A GTG . . . C 3 33.985 18.963 4.415 1 23.21 ? O2A GTG 501 A 1 HETATM 4 O O3A GTG . . . C 3 36.217 17.845 4.225 1 21.39 ? O3A GTG 501 A 1 HETATM 5 P PB GTG . . . C 3 36.833 16.396 3.998 1 22.28 ? PB GTG 501 A 1 HETATM 6 O O1B GTG . . . C 3 35.756 15.34 3.96 1 21.88 ? O1B GTG 501 A 1 HETATM 7 O O2B GTG . . . C 3 37.963 16.28 5.016 1 20.6 ? O2B GTG 501 A 1 HETATM 8 O O3B GTG . . . C 3 37.525 16.592 2.56 1 20.52 ? O3B GTG 501 A 1 HETATM 9 N N9A GTG . . . C 3 34.9 23.706 1.771 1 21.8 ? N9A GTG 501 A 1 HETATM 10 C C8A GTG . . . C 3 33.986 22.941 2.377 1 20.77 ? C8A GTG 501 A 1 HETATM 11 N N7A GTG . . . C 3 32.876 23.682 2.594 1 20.35 ? N7A GTG 501 A 1 HETATM 12 C C7X GTG . . . C 3 31.651 23.156 3.246 1 20.75 ? C7X GTG 501 A 1 HETATM 13 C C5A GTG . . . C 3 33.114 24.907 2.119 1 20.56 ? C5A GTG 501 A 1 HETATM 14 C C6A GTG . . . C 3 32.318 26.058 2.085 1 22.64 ? C6A GTG 501 A 1 HETATM 15 O O6A GTG . . . C 3 31.152 26.096 2.542 1 20.99 ? O6A GTG 501 A 1 HETATM 16 N N1A GTG . . . C 3 32.855 27.181 1.546 1 22.15 ? N1A GTG 501 A 1 HETATM 17 C C2A GTG . . . C 3 34.126 27.16 1.033 1 22.57 ? C2A GTG 501 A 1 HETATM 18 N N2A GTG . . . C 3 34.679 28.258 0.487 1 22.37 ? N2A GTG 501 A 1 HETATM 19 N N3A GTG . . . C 3 34.887 26.043 1.065 1 21.59 ? N3A GTG 501 A 1 HETATM 20 C C4A GTG . . . C 3 34.384 24.916 1.598 1 21.15 ? C4A GTG 501 A 1 HETATM 21 O O5D GTG . . . C 3 35.763 19.976 3.036 1 21.02 ? O5D GTG 501 A 1 HETATM 22 C C5D GTG . . . C 3 36.933 19.952 2.225 1 20.59 ? C5D GTG 501 A 1 HETATM 23 C C4D GTG . . . C 3 37.341 21.371 1.898 1 21.64 ? C4D GTG 501 A 1 HETATM 24 O O4D GTG . . . C 3 36.348 21.944 1.059 1 20.99 ? O4D GTG 501 A 1 HETATM 25 C C3D GTG . . . C 3 37.425 22.283 3.105 1 23.31 ? C3D GTG 501 A 1 HETATM 26 O O3D GTG . . . C 3 38.67 22.133 3.784 1 22.81 ? O3D GTG 501 A 1 HETATM 27 C C2D GTG . . . C 3 37.256 23.641 2.467 1 23.34 ? C2D GTG 501 A 1 HETATM 28 O O2D GTG . . . C 3 38.504 24.073 1.904 1 23.97 ? O2D GTG 501 A 1 HETATM 29 C C1D GTG . . . C 3 36.272 23.341 1.342 1 22.42 ? C1D GTG 501 A 1 HETATM 30 P PG GTG . . . C 3 38.179 15.455 1.632 1 21.25 ? PG GTG 501 A 1 HETATM 31 O O1G GTG . . . C 3 37.695 14.077 1.954 1 21.42 ? O1G GTG 501 A 1 HETATM 32 O O2G GTG . . . C 3 39.671 15.724 1.541 1 22.85 ? O2G GTG 501 A 1 HETATM 33 O O5E GTG . . . C 3 37.548 15.892 0.22 1 22.25 ? O5E GTG 501 A 1 HETATM 34 C C5E GTG . . . C 3 36.168 15.656 -0.053 1 20.85 ? C5E GTG 501 A 1 HETATM 35 C C4E GTG . . . C 3 35.848 16.065 -1.476 1 22.56 ? C4E GTG 501 A 1 HETATM 36 O O4E GTG . . . C 3 36.057 17.474 -1.608 1 21.11 ? O4E GTG 501 A 1 HETATM 37 C C3E GTG . . . C 3 36.761 15.416 -2.5 1 23.3 ? C3E GTG 501 A 1 HETATM 38 O O3E GTG . . . C 3 36.019 15.331 -3.728 1 24.31 ? O3E GTG 501 A 1 HETATM 39 C C2E GTG . . . C 3 37.886 16.422 -2.697 1 22.62 ? C2E GTG 501 A 1 HETATM 40 O O2E GTG . . . C 3 38.52 16.311 -3.982 1 22.59 ? O2E GTG 501 A 1 HETATM 41 C C1E GTG . . . C 3 37.107 17.723 -2.563 1 24.52 ? C1E GTG 501 A 1 HETATM 42 N N9B GTG . . . C 3 37.839 18.909 -2.076 1 24.29 ? N9B GTG 501 A 1 HETATM 43 C C8B GTG . . . C 3 38.411 18.764 -0.758 1 26.24 ? C8B GTG 501 A 1 HETATM 44 N N7B GTG . . . C 3 38.996 20.087 -0.564 1 26.72 ? N7B GTG 501 A 1 HETATM 45 C C5B GTG . . . C 3 38.712 20.849 -1.663 1 26.85 ? C5B GTG 501 A 1 HETATM 46 C C6B GTG . . . C 3 39.021 22.241 -2.035 1 27.7 ? C6B GTG 501 A 1 HETATM 47 O O6B GTG . . . C 3 39.678 22.937 -1.215 1 26.9 ? O6B GTG 501 A 1 HETATM 48 N N1B GTG . . . C 3 38.595 22.69 -3.25 1 26.77 ? N1B GTG 501 A 1 HETATM 49 C C2B GTG . . . C 3 37.88 21.891 -4.115 1 27.23 ? C2B GTG 501 A 1 HETATM 50 N N2B GTG . . . C 3 37.455 22.357 -5.316 1 26.1 ? N2B GTG 501 A 1 HETATM 51 N N3B GTG . . . C 3 37.561 20.605 -3.829 1 26.54 ? N3B GTG 501 A 1 HETATM 52 C C4B GTG . . . C 3 37.937 20.074 -2.648 1 25.36 ? C4B GTG 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 52 #