data_3HY1 # _model_server_result.job_id -GPn0f159EO5WxYKpNHzdw _model_server_result.datetime_utc '2024-11-08 19:54:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":442}' # _entry.id 3HY1 # _exptl.entry_id 3HY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.397 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HY1 _cell.length_a 76.308 _cell.length_b 117.092 _cell.length_c 150.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE1 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 209 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 209 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 445 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.995 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H19 N7 O8 S' _chem_comp.formula_weight 433.397 _chem_comp.id SSA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 CA SSA sing 336 n n N10 HN11 SSA sing 337 n n N10 HN12 SSA sing 338 n n CA CB SSA sing 339 n n CA C9 SSA sing 340 n n CA HA SSA sing 341 n n CB OG SSA sing 342 n n CB HB1 SSA sing 343 n n CB HB2 SSA sing 344 n n OG HOG SSA sing 345 n n C9 O9 SSA doub 346 n n C9 N8 SSA sing 347 n n N8 S1 SSA sing 348 n n N8 HN8 SSA sing 349 n n S1 O1S SSA doub 350 n n S1 O2S SSA doub 351 n n S1 O5' SSA sing 352 n n O5' C5' SSA sing 353 n n C5' C4' SSA sing 354 n n C5' "H5'1" SSA sing 355 n n C5' "H5'2" SSA sing 356 n n C4' O4' SSA sing 357 n n C4' C3' SSA sing 358 n n C4' H4' SSA sing 359 n n O4' C1' SSA sing 360 n n C3' O3' SSA sing 361 n n C3' C2' SSA sing 362 n n C3' H3' SSA sing 363 n n O3' HO3' SSA sing 364 n n C2' O2' SSA sing 365 n n C2' C1' SSA sing 366 n n C2' H2' SSA sing 367 n n O2' HO2' SSA sing 368 n n C1' N9 SSA sing 369 n n C1' H1' SSA sing 370 n n N9 C8 SSA sing 371 n y N9 C4 SSA sing 372 n y C8 N7 SSA doub 373 n y C8 H8 SSA sing 374 n n N7 C5 SSA sing 375 n y C5 C6 SSA sing 376 n y C5 C4 SSA doub 377 n y C6 N6 SSA sing 378 n n C6 N1 SSA doub 379 n y N6 HN61 SSA sing 380 n n N6 HN62 SSA sing 381 n n N1 C2 SSA sing 382 n y C2 N3 SSA doub 383 n y C2 H2 SSA sing 384 n n N3 C4 SSA sing 385 n y # _atom_sites.entry_id 3HY1 _atom_sites.fract_transf_matrix[1][1] 0.013105 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SSA A 1 442 1 SSA SSA . D 3 HED A 1 443 1 HED HED . E 4 SO4 A 1 444 1 SO4 SO4 . F 5 MG A 1 445 1 MG MG . G 6 MES B 1 442 1 MES MES . H 7 HOH A 1 446 1 HOH HOH . H 7 HOH A 2 447 2 HOH HOH . H 7 HOH A 3 448 4 HOH HOH . H 7 HOH A 4 449 7 HOH HOH . H 7 HOH A 5 450 8 HOH HOH . H 7 HOH A 6 451 9 HOH HOH . H 7 HOH A 7 452 11 HOH HOH . H 7 HOH A 8 453 12 HOH HOH . H 7 HOH A 9 454 13 HOH HOH . H 7 HOH A 10 455 14 HOH HOH . H 7 HOH A 11 456 15 HOH HOH . H 7 HOH A 12 457 16 HOH HOH . H 7 HOH A 13 458 18 HOH HOH . H 7 HOH A 14 459 19 HOH HOH . H 7 HOH A 15 460 20 HOH HOH . H 7 HOH A 16 461 23 HOH HOH . H 7 HOH A 17 462 25 HOH HOH . H 7 HOH A 18 463 27 HOH HOH . H 7 HOH A 19 464 28 HOH HOH . H 7 HOH A 20 465 29 HOH HOH . H 7 HOH A 21 466 31 HOH HOH . H 7 HOH A 22 467 33 HOH HOH . H 7 HOH A 23 468 35 HOH HOH . H 7 HOH A 24 469 36 HOH HOH . H 7 HOH A 25 470 39 HOH HOH . H 7 HOH A 26 471 40 HOH HOH . H 7 HOH A 27 472 41 HOH HOH . H 7 HOH A 28 473 43 HOH HOH . H 7 HOH A 29 474 45 HOH HOH . H 7 HOH A 30 475 47 HOH HOH . H 7 HOH A 31 476 49 HOH HOH . H 7 HOH A 32 477 53 HOH HOH . H 7 HOH A 33 478 54 HOH HOH . H 7 HOH A 34 479 55 HOH HOH . H 7 HOH A 35 480 56 HOH HOH . H 7 HOH A 36 481 57 HOH HOH . H 7 HOH A 37 482 58 HOH HOH . H 7 HOH A 38 483 62 HOH HOH . H 7 HOH A 39 484 65 HOH HOH . H 7 HOH A 40 485 68 HOH HOH . H 7 HOH A 41 486 69 HOH HOH . H 7 HOH A 42 487 70 HOH HOH . H 7 HOH A 43 488 71 HOH HOH . H 7 HOH A 44 489 72 HOH HOH . H 7 HOH A 45 490 73 HOH HOH . I 7 HOH B 1 443 3 HOH HOH . I 7 HOH B 2 444 5 HOH HOH . I 7 HOH B 3 445 6 HOH HOH . I 7 HOH B 4 446 10 HOH HOH . I 7 HOH B 5 447 17 HOH HOH . I 7 HOH B 6 448 21 HOH HOH . I 7 HOH B 7 449 22 HOH HOH . I 7 HOH B 8 450 24 HOH HOH . I 7 HOH B 9 451 26 HOH HOH . I 7 HOH B 10 452 30 HOH HOH . I 7 HOH B 11 453 32 HOH HOH . I 7 HOH B 12 454 34 HOH HOH . I 7 HOH B 13 455 37 HOH HOH . I 7 HOH B 14 456 38 HOH HOH . I 7 HOH B 15 457 42 HOH HOH . I 7 HOH B 16 458 44 HOH HOH . I 7 HOH B 17 459 46 HOH HOH . I 7 HOH B 18 460 48 HOH HOH . I 7 HOH B 19 461 50 HOH HOH . I 7 HOH B 20 462 51 HOH HOH . I 7 HOH B 21 463 52 HOH HOH . I 7 HOH B 22 464 59 HOH HOH . I 7 HOH B 23 465 60 HOH HOH . I 7 HOH B 24 466 61 HOH HOH . I 7 HOH B 25 467 63 HOH HOH . I 7 HOH B 26 468 64 HOH HOH . I 7 HOH B 27 469 66 HOH HOH . I 7 HOH B 28 470 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N10 SSA . . . C 2 -2.207 -15.084 -34.142 1 42.44 ? N10 SSA 442 A 1 HETATM 2 C CA SSA . . . C 2 -3.47 -15.754 -34.384 1 42.51 ? CA SSA 442 A 1 HETATM 3 C CB SSA . . . C 2 -3.698 -16.687 -33.21 1 42.94 ? CB SSA 442 A 1 HETATM 4 O OG SSA . . . C 2 -2.46 -16.663 -32.457 1 45.12 ? OG SSA 442 A 1 HETATM 5 C C9 SSA . . . C 2 -4.527 -14.703 -34.462 1 41.64 ? C9 SSA 442 A 1 HETATM 6 O O9 SSA . . . C 2 -4.271 -13.572 -34.086 1 41.37 ? O9 SSA 442 A 1 HETATM 7 N N8 SSA . . . C 2 -5.708 -15.033 -34.959 1 40.96 ? N8 SSA 442 A 1 HETATM 8 S S1 SSA . . . C 2 -6.672 -13.802 -35.258 1 40.8 ? S1 SSA 442 A 1 HETATM 9 O O1S SSA . . . C 2 -5.95 -12.826 -36.026 1 41.51 ? O1S SSA 442 A 1 HETATM 10 O O2S SSA . . . C 2 -7.818 -14.249 -35.997 1 41.66 ? O2S SSA 442 A 1 HETATM 11 O O5' SSA . . . C 2 -7.148 -13.141 -33.845 1 40.73 ? O5' SSA 442 A 1 HETATM 12 C C5' SSA . . . C 2 -7.434 -14.024 -32.769 1 41.22 ? C5' SSA 442 A 1 HETATM 13 C C4' SSA . . . C 2 -8.776 -13.664 -32.157 1 41.32 ? C4' SSA 442 A 1 HETATM 14 O O4' SSA . . . C 2 -8.735 -12.354 -31.587 1 41.15 ? O4' SSA 442 A 1 HETATM 15 C C3' SSA . . . C 2 -9.901 -13.638 -33.174 1 41.11 ? C3' SSA 442 A 1 HETATM 16 O O3' SSA . . . C 2 -10.499 -14.929 -33.303 1 41.45 ? O3' SSA 442 A 1 HETATM 17 C C2' SSA . . . C 2 -10.871 -12.658 -32.561 1 40.95 ? C2' SSA 442 A 1 HETATM 18 O O2' SSA . . . C 2 -11.714 -13.354 -31.64 1 40.83 ? O2' SSA 442 A 1 HETATM 19 C C1' SSA . . . C 2 -9.993 -11.7 -31.777 1 40.76 ? C1' SSA 442 A 1 HETATM 20 N N9 SSA . . . C 2 -9.792 -10.45 -32.548 1 40.52 ? N9 SSA 442 A 1 HETATM 21 C C8 SSA . . . C 2 -8.999 -10.309 -33.628 1 40.34 ? C8 SSA 442 A 1 HETATM 22 N N7 SSA . . . C 2 -9.032 -9.037 -34.097 1 40 ? N7 SSA 442 A 1 HETATM 23 C C5 SSA . . . C 2 -9.863 -8.34 -33.303 1 39.88 ? C5 SSA 442 A 1 HETATM 24 C C6 SSA . . . C 2 -10.348 -6.944 -33.239 1 39.73 ? C6 SSA 442 A 1 HETATM 25 N N6 SSA . . . C 2 -9.936 -6.024 -34.144 1 39.54 ? N6 SSA 442 A 1 HETATM 26 N N1 SSA . . . C 2 -11.212 -6.621 -32.25 1 39.56 ? N1 SSA 442 A 1 HETATM 27 C C2 SSA . . . C 2 -11.626 -7.53 -31.348 1 39.71 ? C2 SSA 442 A 1 HETATM 28 N N3 SSA . . . C 2 -11.228 -8.816 -31.347 1 40.01 ? N3 SSA 442 A 1 HETATM 29 C C4 SSA . . . C 2 -10.362 -9.274 -32.284 1 40.12 ? C4 SSA 442 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #