data_3HY1 # _model_server_result.job_id 9mPsS5d-3xlIRa9hSJz9SQ _model_server_result.datetime_utc '2024-11-08 20:00:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":443}' # _entry.id 3HY1 # _exptl.entry_id 3HY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYETHYL DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HY1 _cell.length_a 76.308 _cell.length_b 117.092 _cell.length_c 150.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE1 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 209 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 209 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 445 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.995 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id HED _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYETHYL DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HED sing 129 n n C1 C2 HED sing 130 n n C1 H11 HED sing 131 n n C1 H12 HED sing 132 n n O1 HO1 HED sing 133 n n C2 S3 HED sing 134 n n C2 H21 HED sing 135 n n C2 H22 HED sing 136 n n S3 S4 HED sing 137 n n S4 C5 HED sing 138 n n C5 C6 HED sing 139 n n C5 H51 HED sing 140 n n C5 H52 HED sing 141 n n C6 O6 HED sing 142 n n C6 H61 HED sing 143 n n C6 H62 HED sing 144 n n O6 HO6 HED sing 145 n n # _atom_sites.entry_id 3HY1 _atom_sites.fract_transf_matrix[1][1] 0.013105 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SSA A 1 442 1 SSA SSA . D 3 HED A 1 443 1 HED HED . E 4 SO4 A 1 444 1 SO4 SO4 . F 5 MG A 1 445 1 MG MG . G 6 MES B 1 442 1 MES MES . H 7 HOH A 1 446 1 HOH HOH . H 7 HOH A 2 447 2 HOH HOH . H 7 HOH A 3 448 4 HOH HOH . H 7 HOH A 4 449 7 HOH HOH . H 7 HOH A 5 450 8 HOH HOH . H 7 HOH A 6 451 9 HOH HOH . H 7 HOH A 7 452 11 HOH HOH . H 7 HOH A 8 453 12 HOH HOH . H 7 HOH A 9 454 13 HOH HOH . H 7 HOH A 10 455 14 HOH HOH . H 7 HOH A 11 456 15 HOH HOH . H 7 HOH A 12 457 16 HOH HOH . H 7 HOH A 13 458 18 HOH HOH . H 7 HOH A 14 459 19 HOH HOH . H 7 HOH A 15 460 20 HOH HOH . H 7 HOH A 16 461 23 HOH HOH . H 7 HOH A 17 462 25 HOH HOH . H 7 HOH A 18 463 27 HOH HOH . H 7 HOH A 19 464 28 HOH HOH . H 7 HOH A 20 465 29 HOH HOH . H 7 HOH A 21 466 31 HOH HOH . H 7 HOH A 22 467 33 HOH HOH . H 7 HOH A 23 468 35 HOH HOH . H 7 HOH A 24 469 36 HOH HOH . H 7 HOH A 25 470 39 HOH HOH . H 7 HOH A 26 471 40 HOH HOH . H 7 HOH A 27 472 41 HOH HOH . H 7 HOH A 28 473 43 HOH HOH . H 7 HOH A 29 474 45 HOH HOH . H 7 HOH A 30 475 47 HOH HOH . H 7 HOH A 31 476 49 HOH HOH . H 7 HOH A 32 477 53 HOH HOH . H 7 HOH A 33 478 54 HOH HOH . H 7 HOH A 34 479 55 HOH HOH . H 7 HOH A 35 480 56 HOH HOH . H 7 HOH A 36 481 57 HOH HOH . H 7 HOH A 37 482 58 HOH HOH . H 7 HOH A 38 483 62 HOH HOH . H 7 HOH A 39 484 65 HOH HOH . H 7 HOH A 40 485 68 HOH HOH . H 7 HOH A 41 486 69 HOH HOH . H 7 HOH A 42 487 70 HOH HOH . H 7 HOH A 43 488 71 HOH HOH . H 7 HOH A 44 489 72 HOH HOH . H 7 HOH A 45 490 73 HOH HOH . I 7 HOH B 1 443 3 HOH HOH . I 7 HOH B 2 444 5 HOH HOH . I 7 HOH B 3 445 6 HOH HOH . I 7 HOH B 4 446 10 HOH HOH . I 7 HOH B 5 447 17 HOH HOH . I 7 HOH B 6 448 21 HOH HOH . I 7 HOH B 7 449 22 HOH HOH . I 7 HOH B 8 450 24 HOH HOH . I 7 HOH B 9 451 26 HOH HOH . I 7 HOH B 10 452 30 HOH HOH . I 7 HOH B 11 453 32 HOH HOH . I 7 HOH B 12 454 34 HOH HOH . I 7 HOH B 13 455 37 HOH HOH . I 7 HOH B 14 456 38 HOH HOH . I 7 HOH B 15 457 42 HOH HOH . I 7 HOH B 16 458 44 HOH HOH . I 7 HOH B 17 459 46 HOH HOH . I 7 HOH B 18 460 48 HOH HOH . I 7 HOH B 19 461 50 HOH HOH . I 7 HOH B 20 462 51 HOH HOH . I 7 HOH B 21 463 52 HOH HOH . I 7 HOH B 22 464 59 HOH HOH . I 7 HOH B 23 465 60 HOH HOH . I 7 HOH B 24 466 61 HOH HOH . I 7 HOH B 25 467 63 HOH HOH . I 7 HOH B 26 468 64 HOH HOH . I 7 HOH B 27 469 66 HOH HOH . I 7 HOH B 28 470 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HED . . . D 3 1.355 20.135 -40.215 1 61.65 ? C1 HED 443 A 1 HETATM 2 O O1 HED . . . D 3 2.554 20.859 -40.402 1 60.72 ? O1 HED 443 A 1 HETATM 3 C C2 HED . . . D 3 1.586 18.678 -40.627 1 62.31 ? C2 HED 443 A 1 HETATM 4 S S3 HED . . . D 3 0.735 17.54 -39.498 1 63.21 ? S3 HED 443 A 1 HETATM 5 S S4 HED . . . D 3 1.903 15.874 -39.296 1 63.39 ? S4 HED 443 A 1 HETATM 6 C C5 HED . . . D 3 3.538 16.252 -39.985 1 63.16 ? C5 HED 443 A 1 HETATM 7 C C6 HED . . . D 3 4.298 14.967 -40.302 1 63.05 ? C6 HED 443 A 1 HETATM 8 O O6 HED . . . D 3 5.496 15.291 -40.969 1 62.96 ? O6 HED 443 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #