data_3HY3 # _model_server_result.job_id CCXkmWRwPOGldE-UTilarQ _model_server_result.datetime_utc '2024-10-19 08:38:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hy3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3HY3 # _exptl.entry_id 3HY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 479.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-({4-[{[(2R,4S,4aR,6S,8aS)-2-amino-4-hydroxydecahydropteridin-6-yl]methyl}(formyl)amino]phenyl}carbonyl)-D-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HY3 _cell.length_a 48.861 _cell.length_b 144.974 _cell.length_c 59.408 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -29.704 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 D NI NI . A NI 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A OD2 ASP 91 A ASP 91 1_555 D NI NI . A NI 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc3 C NI NI . A NI 204 1_555 N O HOH . A HOH 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc4 C NI NI . A NI 204 1_555 N O HOH . A HOH 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc5 C NI NI . A NI 204 1_555 N O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc6 C NI NI . A NI 204 1_555 N O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc7 D NI NI . A NI 205 1_555 N O HOH . A HOH 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc8 D NI NI . A NI 205 1_555 N O HOH . A HOH 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc9 K MG MG . A MG 212 1_555 N O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C20 H29 N7 O7' _chem_comp.formula_weight 479.487 _chem_comp.id 10F _chem_comp.mon_nstd_flag . _chem_comp.name 'N-({4-[{[(2R,4S,4aR,6S,8aS)-2-amino-4-hydroxydecahydropteridin-6-yl]methyl}(formyl)amino]phenyl}carbonyl)-D-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C8A 10F sing 1 n n N1 C2 10F sing 2 n n NA2 C2 10F sing 3 n n N3 C2 10F sing 4 n n C4 N3 10F sing 5 n n O4 C4 10F sing 6 n n C4A C4 10F sing 7 n n C4A C8A 10F sing 8 n n N5 C4A 10F sing 9 n n C6 N5 10F sing 10 n n C6 C7 10F sing 11 n n C7 N8 10F sing 12 n n N8 C8A 10F sing 13 n n C9 C6 10F sing 14 n n N10 C9 10F sing 15 n n C11 C16 10F sing 16 n y C12 C11 10F doub 17 n y C12 C13 10F sing 18 n y C13 C14 10F doub 19 n y C14 N10 10F sing 20 n n C14 C15 10F sing 21 n y C16 C15 10F doub 22 n y C17 C11 10F sing 23 n n N C17 10F sing 24 n n CA N 10F sing 25 n n CB CA 10F sing 26 n n CB CG 10F sing 27 n n CD CG 10F sing 28 n n CD OE1 10F sing 29 n n OE2 CD 10F doub 30 n n CT CA 10F sing 31 n n CT O2 10F doub 32 n n O1 CT 10F sing 33 n n C18 N10 10F sing 34 n n C18 O5 10F doub 35 n n C17 O 10F doub 36 n n N1 HN1 10F sing 37 n n C2 H2 10F sing 38 n n NA2 HNA2 10F sing 39 n n NA2 HNAA 10F sing 40 n n N3 HN3 10F sing 41 n n C4 H4 10F sing 42 n n O4 HO4 10F sing 43 n n C4A H4A 10F sing 44 n n N5 HN5 10F sing 45 n n C6 H6 10F sing 46 n n C7 H7 10F sing 47 n n C7 H7A 10F sing 48 n n N8 HN8 10F sing 49 n n C8A H8A 10F sing 50 n n C9 H9 10F sing 51 n n C9 H9A 10F sing 52 n n C12 H12 10F sing 53 n n C13 H13 10F sing 54 n n C15 H15 10F sing 55 n n C16 H16 10F sing 56 n n N HN 10F sing 57 n n CA HA 10F sing 58 n n CB HB 10F sing 59 n n CB HBA 10F sing 60 n n CG HG 10F sing 61 n n CG HGA 10F sing 62 n n OE1 HOE1 10F sing 63 n n O1 HO1 10F sing 64 n n C18 H18 10F sing 65 n n # _atom_sites.entry_id 3HY3 _atom_sites.fract_transf_matrix[1][1] 0.020466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 10F A 1 501 501 10F THF . C 3 NI A 1 204 1 NI NI . D 3 NI A 1 205 2 NI NI . E 4 MG A 1 206 3 MG MG . F 4 MG A 1 207 4 MG MG . G 4 MG A 1 208 6 MG MG . H 4 MG A 1 209 7 MG MG . I 4 MG A 1 210 8 MG MG . J 4 MG A 1 211 9 MG MG . K 4 MG A 1 212 10 MG MG . L 4 MG A 1 213 11 MG MG . M 4 MG A 1 214 12 MG MG . N 5 HOH A 1 215 1 HOH HOH . N 5 HOH A 2 216 2 HOH HOH . N 5 HOH A 3 217 3 HOH HOH . N 5 HOH A 4 218 4 HOH HOH . N 5 HOH A 5 219 5 HOH HOH . N 5 HOH A 6 220 6 HOH HOH . N 5 HOH A 7 221 7 HOH HOH . N 5 HOH A 8 222 8 HOH HOH . N 5 HOH A 9 223 9 HOH HOH . N 5 HOH A 10 224 10 HOH HOH . N 5 HOH A 11 225 11 HOH HOH . N 5 HOH A 12 226 12 HOH HOH . N 5 HOH A 13 227 13 HOH HOH . N 5 HOH A 14 228 14 HOH HOH . N 5 HOH A 15 229 15 HOH HOH . N 5 HOH A 16 230 16 HOH HOH . N 5 HOH A 17 231 17 HOH HOH . N 5 HOH A 18 232 18 HOH HOH . N 5 HOH A 19 233 19 HOH HOH . N 5 HOH A 20 234 20 HOH HOH . N 5 HOH A 21 235 21 HOH HOH . N 5 HOH A 22 236 22 HOH HOH . N 5 HOH A 23 237 23 HOH HOH . N 5 HOH A 24 238 24 HOH HOH . N 5 HOH A 25 239 25 HOH HOH . N 5 HOH A 26 240 26 HOH HOH . N 5 HOH A 27 241 27 HOH HOH . N 5 HOH A 28 242 28 HOH HOH . N 5 HOH A 29 243 29 HOH HOH . N 5 HOH A 30 244 30 HOH HOH . N 5 HOH A 31 245 31 HOH HOH . N 5 HOH A 32 246 32 HOH HOH . N 5 HOH A 33 247 33 HOH HOH . N 5 HOH A 34 248 34 HOH HOH . N 5 HOH A 35 249 35 HOH HOH . N 5 HOH A 36 250 36 HOH HOH . N 5 HOH A 37 251 37 HOH HOH . N 5 HOH A 38 252 38 HOH HOH . N 5 HOH A 39 253 39 HOH HOH . N 5 HOH A 40 254 40 HOH HOH . N 5 HOH A 41 255 41 HOH HOH . N 5 HOH A 42 256 42 HOH HOH . N 5 HOH A 43 257 43 HOH HOH . N 5 HOH A 44 258 44 HOH HOH . N 5 HOH A 45 259 45 HOH HOH . N 5 HOH A 46 260 46 HOH HOH . N 5 HOH A 47 261 47 HOH HOH . N 5 HOH A 48 262 48 HOH HOH . N 5 HOH A 49 263 49 HOH HOH . N 5 HOH A 50 264 50 HOH HOH . N 5 HOH A 51 265 51 HOH HOH . N 5 HOH A 52 266 52 HOH HOH . N 5 HOH A 53 267 53 HOH HOH . N 5 HOH A 54 268 54 HOH HOH . N 5 HOH A 55 269 55 HOH HOH . N 5 HOH A 56 270 56 HOH HOH . N 5 HOH A 57 271 57 HOH HOH . N 5 HOH A 58 272 58 HOH HOH . N 5 HOH A 59 273 59 HOH HOH . N 5 HOH A 60 274 60 HOH HOH . N 5 HOH A 61 275 61 HOH HOH . N 5 HOH A 62 276 62 HOH HOH . N 5 HOH A 63 277 63 HOH HOH . N 5 HOH A 64 278 64 HOH HOH . N 5 HOH A 65 279 65 HOH HOH . N 5 HOH A 66 280 66 HOH HOH . N 5 HOH A 67 281 67 HOH HOH . N 5 HOH A 68 282 68 HOH HOH . N 5 HOH A 69 283 69 HOH HOH . N 5 HOH A 70 284 70 HOH HOH . N 5 HOH A 71 285 71 HOH HOH . N 5 HOH A 72 286 72 HOH HOH . N 5 HOH A 73 287 73 HOH HOH . N 5 HOH A 74 288 74 HOH HOH . N 5 HOH A 75 289 75 HOH HOH . N 5 HOH A 76 290 76 HOH HOH . N 5 HOH A 77 291 77 HOH HOH . N 5 HOH A 78 292 78 HOH HOH . N 5 HOH A 79 293 79 HOH HOH . N 5 HOH A 80 294 80 HOH HOH . N 5 HOH A 81 295 81 HOH HOH . N 5 HOH A 82 296 82 HOH HOH . N 5 HOH A 83 297 83 HOH HOH . N 5 HOH A 84 298 84 HOH HOH . N 5 HOH A 85 299 85 HOH HOH . N 5 HOH A 86 300 86 HOH HOH . N 5 HOH A 87 301 87 HOH HOH . N 5 HOH A 88 302 88 HOH HOH . N 5 HOH A 89 303 89 HOH HOH . N 5 HOH A 90 304 90 HOH HOH . N 5 HOH A 91 305 91 HOH HOH . N 5 HOH A 92 306 92 HOH HOH . N 5 HOH A 93 307 93 HOH HOH . N 5 HOH A 94 308 94 HOH HOH . N 5 HOH A 95 309 95 HOH HOH . N 5 HOH A 96 310 96 HOH HOH . N 5 HOH A 97 311 97 HOH HOH . N 5 HOH A 98 312 98 HOH HOH . N 5 HOH A 99 313 99 HOH HOH . N 5 HOH A 100 314 100 HOH HOH . N 5 HOH A 101 315 101 HOH HOH . N 5 HOH A 102 316 102 HOH HOH . N 5 HOH A 103 317 103 HOH HOH . N 5 HOH A 104 318 104 HOH HOH . N 5 HOH A 105 319 105 HOH HOH . N 5 HOH A 106 320 106 HOH HOH . N 5 HOH A 107 321 107 HOH HOH . N 5 HOH A 108 322 108 HOH HOH . N 5 HOH A 109 323 109 HOH HOH . N 5 HOH A 110 324 110 HOH HOH . N 5 HOH A 111 325 111 HOH HOH . N 5 HOH A 112 326 112 HOH HOH . N 5 HOH A 113 327 113 HOH HOH . N 5 HOH A 114 328 114 HOH HOH . N 5 HOH A 115 329 115 HOH HOH . N 5 HOH A 116 330 116 HOH HOH . N 5 HOH A 117 331 117 HOH HOH . N 5 HOH A 118 332 118 HOH HOH . N 5 HOH A 119 333 119 HOH HOH . N 5 HOH A 120 334 120 HOH HOH . N 5 HOH A 121 335 121 HOH HOH . N 5 HOH A 122 336 122 HOH HOH . N 5 HOH A 123 337 123 HOH HOH . N 5 HOH A 124 338 124 HOH HOH . N 5 HOH A 125 339 125 HOH HOH . N 5 HOH A 126 340 126 HOH HOH . N 5 HOH A 127 341 127 HOH HOH . N 5 HOH A 128 342 128 HOH HOH . N 5 HOH A 129 343 129 HOH HOH . N 5 HOH A 130 344 130 HOH HOH . N 5 HOH A 131 345 131 HOH HOH . N 5 HOH A 132 346 132 HOH HOH . N 5 HOH A 133 347 133 HOH HOH . N 5 HOH A 134 348 134 HOH HOH . N 5 HOH A 135 349 135 HOH HOH . N 5 HOH A 136 350 136 HOH HOH . N 5 HOH A 137 351 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 10F . . . B 2 12.268 17.535 -6.237 1 23.05 ? N1 10F 501 A 1 HETATM 2 C C2 10F . . . B 2 11.705 18.739 -5.534 1 23.82 ? C2 10F 501 A 1 HETATM 3 N NA2 10F . . . B 2 12.558 19.867 -5.716 1 22.35 ? NA2 10F 501 A 1 HETATM 4 N N3 10F . . . B 2 10.263 19.131 -5.791 1 27.83 ? N3 10F 501 A 1 HETATM 5 C C4 10F . . . B 2 9.387 17.941 -5.938 1 26.95 ? C4 10F 501 A 1 HETATM 6 O O4 10F . . . B 2 8.091 18.201 -6.304 1 30.66 ? O4 10F 501 A 1 HETATM 7 C C4A 10F . . . B 2 10.04 16.898 -6.815 1 29.4 ? C4A 10F 501 A 1 HETATM 8 N N5 10F . . . B 2 9 15.847 -7.073 1 28.34 ? N5 10F 501 A 1 HETATM 9 C C6 10F . . . B 2 9.712 14.742 -7.797 1 33.6 ? C6 10F 501 A 1 HETATM 10 C C7 10F . . . B 2 10.918 14.105 -7.078 1 30.49 ? C7 10F 501 A 1 HETATM 11 N N8 10F . . . B 2 11.93 15.192 -6.871 1 28.34 ? N8 10F 501 A 1 HETATM 12 C C8A 10F . . . B 2 11.301 16.397 -6.181 1 28.16 ? C8A 10F 501 A 1 HETATM 13 C C9 10F . . . B 2 8.918 14.034 -8.944 1 34.51 ? C9 10F 501 A 1 HETATM 14 N N10 10F . . . B 2 8.606 14.66 -9.911 1 32.9 ? N10 10F 501 A 1 HETATM 15 C C11 10F . . . B 2 4.247 14.775 -10.897 1 30.74 ? C11 10F 501 A 1 HETATM 16 C C12 10F . . . B 2 5.132 16.085 -11.106 1 29.68 ? C12 10F 501 A 1 HETATM 17 C C13 10F . . . B 2 6.647 16.049 -10.8 1 34.94 ? C13 10F 501 A 1 HETATM 18 C C14 10F . . . B 2 7.24 14.703 -10.267 1 32.98 ? C14 10F 501 A 1 HETATM 19 C C15 10F . . . B 2 6.377 13.392 -10.025 1 30.66 ? C15 10F 501 A 1 HETATM 20 C C16 10F . . . B 2 4.864 13.454 -10.34 1 26.73 ? C16 10F 501 A 1 HETATM 21 C C17 10F . . . B 2 2.757 14.84 -11.105 1 33.73 ? C17 10F 501 A 1 HETATM 22 N N 10F . . . B 2 2.433 15.994 -11.907 1 32.81 ? N 10F 501 A 1 HETATM 23 C CA 10F . . . B 2 1.925 16.027 -13.272 1 35.11 ? CA 10F 501 A 1 HETATM 24 C CB 10F . . . B 2 1.195 17.368 -13.435 0 35.55 ? CB 10F 501 A 1 HETATM 25 C CG 10F . . . B 2 2.255 18.448 -13.071 0 35.41 ? CG 10F 501 A 1 HETATM 26 C CD 10F . . . B 2 2.707 19.337 -14.276 0 35.51 ? CD 10F 501 A 1 HETATM 27 O OE1 10F . . . B 2 3.203 20.607 -13.878 0 35.63 ? OE1 10F 501 A 1 HETATM 28 O OE2 10F . . . B 2 1.771 19.446 -15.328 0 35.38 ? OE2 10F 501 A 1 HETATM 29 C CT 10F . . . B 2 1.052 14.81 -13.565 1 35.71 ? CT 10F 501 A 1 HETATM 30 O O2 10F . . . B 2 1.863 13.664 -13.729 0 36.17 ? O2 10F 501 A 1 HETATM 31 O O1 10F . . . B 2 -0.005 14.668 -12.636 0 34.94 ? O1 10F 501 A 1 HETATM 32 C C18 10F . . . B 2 9.661 14.902 -10.823 1 34.09 ? C18 10F 501 A 1 HETATM 33 O O5 10F . . . B 2 10.683 14.674 -10.367 1 35.57 ? O5 10F 501 A 1 HETATM 34 O O 10F . . . B 2 2.145 14.667 -10.134 1 33.2 ? O 10F 501 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #