data_3HY4
#
_model_server_result.job_id            xil5pn3fTX48HVkCfI_Fhw 
_model_server_result.datetime_utc      '2025-07-30 20:09:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hy4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":502}' 
#
_entry.id    3HY4 
#
_exptl.entry_id    3HY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HY4 
_cell.length_a            48.065 
_cell.length_b            144.583 
_cell.length_c            60.149 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 B NI NI . A NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc2 A OD2 ASP 91 A ASP 91 1_555 B NI NI . A NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 338 n n 
P O2 PO4 sing 339 n n 
P O3 PO4 sing 340 n n 
P O4 PO4 sing 341 n n 
#
_atom_sites.entry_id                     3HY4 
_atom_sites.fract_transf_matrix[1][1]    0.020805 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006916 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016625 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 204 1 NI NI . 
C 3 MG A 1 205 2 MG MG . 
D 3 MG A 1 206 3 MG MG . 
E 3 MG A 1 207 4 MG MG . 
F 4 N5G A 1 501 501 N5G THF . 
G 5 PO4 A 1 502 502 PO4 PO4 . 
H 6 HOH A 1 208 1 HOH HOH . 
H 6 HOH A 2 209 2 HOH HOH . 
H 6 HOH A 3 210 3 HOH HOH . 
H 6 HOH A 4 211 4 HOH HOH . 
H 6 HOH A 5 212 5 HOH HOH . 
H 6 HOH A 6 213 6 HOH HOH . 
H 6 HOH A 7 214 7 HOH HOH . 
H 6 HOH A 8 215 8 HOH HOH . 
H 6 HOH A 9 216 9 HOH HOH . 
H 6 HOH A 10 217 10 HOH HOH . 
H 6 HOH A 11 218 11 HOH HOH . 
H 6 HOH A 12 219 12 HOH HOH . 
H 6 HOH A 13 220 13 HOH HOH . 
H 6 HOH A 14 221 14 HOH HOH . 
H 6 HOH A 15 222 15 HOH HOH . 
H 6 HOH A 16 223 16 HOH HOH . 
H 6 HOH A 17 224 17 HOH HOH . 
H 6 HOH A 18 225 18 HOH HOH . 
H 6 HOH A 19 226 19 HOH HOH . 
H 6 HOH A 20 227 20 HOH HOH . 
H 6 HOH A 21 228 21 HOH HOH . 
H 6 HOH A 22 229 22 HOH HOH . 
H 6 HOH A 23 230 23 HOH HOH . 
H 6 HOH A 24 231 24 HOH HOH . 
H 6 HOH A 25 232 25 HOH HOH . 
H 6 HOH A 26 233 26 HOH HOH . 
H 6 HOH A 27 234 27 HOH HOH . 
H 6 HOH A 28 235 28 HOH HOH . 
H 6 HOH A 29 236 29 HOH HOH . 
H 6 HOH A 30 237 30 HOH HOH . 
H 6 HOH A 31 238 31 HOH HOH . 
H 6 HOH A 32 239 32 HOH HOH . 
H 6 HOH A 33 240 33 HOH HOH . 
H 6 HOH A 34 241 34 HOH HOH . 
H 6 HOH A 35 242 35 HOH HOH . 
H 6 HOH A 36 243 36 HOH HOH . 
H 6 HOH A 37 244 37 HOH HOH . 
H 6 HOH A 38 245 38 HOH HOH . 
H 6 HOH A 39 246 39 HOH HOH . 
H 6 HOH A 40 247 40 HOH HOH . 
H 6 HOH A 41 248 41 HOH HOH . 
H 6 HOH A 42 249 42 HOH HOH . 
H 6 HOH A 43 250 43 HOH HOH . 
H 6 HOH A 44 251 44 HOH HOH . 
H 6 HOH A 45 252 45 HOH HOH . 
H 6 HOH A 46 253 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . G 5 -3.542 14.39 4.654 1 46.52 ? P PO4 502 A 1 
HETATM 2 O O1 PO4 . . . G 5 -4.249 15.669 4.257 1 37 ? O1 PO4 502 A 1 
HETATM 3 O O3 PO4 . . . G 5 -2.872 13.759 3.446 1 37.68 ? O3 PO4 502 A 1 
HETATM 4 O O4 PO4 . . . G 5 -2.521 14.696 5.733 1 41.4 ? O4 PO4 502 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
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