data_3HY6 # _model_server_result.job_id sDXd_Qm-6lJQzjjZMr-kEw _model_server_result.datetime_utc '2024-11-12 19:51:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":218}' # _entry.id 3HY6 # _exptl.entry_id 3HY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HY6 _cell.length_a 48.511 _cell.length_b 145.221 _cell.length_c 59.655 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 48.511 0 -29.8275 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 B NI NI . A NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc2 A OD2 ASP 91 A ASP 91 1_555 B NI NI . A NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A NE2 HIS 142 A HIS 142 1_555 D NI NI . A NI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc4 B NI NI . A NI 204 1_555 S O HOH . A HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 B NI NI . A NI 204 1_555 S O HOH . A HOH 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc6 B NI NI . A NI 204 1_555 S O HOH . A HOH 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc7 D NI NI . A NI 206 1_555 S O HOH . A HOH 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc8 D NI NI . A NI 206 1_555 S O HOH . A HOH 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc9 D NI NI . A NI 206 1_555 S O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc10 H MG MG . A MG 210 1_555 S O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc11 P MG MG . A MG 217 1_555 S O HOH . A HOH 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HY6 _atom_sites.fract_transf_matrix[1][1] 0.020614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 204 2 NI NI . C 3 MG A 1 205 3 MG MG . D 2 NI A 1 206 4 NI NI . E 3 MG A 1 207 7 MG MG . F 3 MG A 1 208 8 MG MG . G 3 MG A 1 209 9 MG MG . H 3 MG A 1 210 11 MG MG . I 4 PO4 A 1 211 1 PO4 PO4 . J 3 MG A 1 212 1 MG MG . K 3 MG A 1 213 2 MG MG . L 5 ADP A 1 302 302 ADP ADP . M 3 MG A 1 214 1 MG MG . N 3 MG A 1 215 1 MG MG . O 3 MG A 1 216 1 MG MG . P 3 MG A 1 217 1 MG MG . Q 2 NI A 1 218 1 NI NI . R 3 MG A 1 219 1 MG MG . S 6 HOH A 1 220 1 HOH HOH . S 6 HOH A 2 221 2 HOH HOH . S 6 HOH A 3 222 3 HOH HOH . S 6 HOH A 4 223 4 HOH HOH . S 6 HOH A 5 224 5 HOH HOH . S 6 HOH A 6 225 6 HOH HOH . S 6 HOH A 7 226 7 HOH HOH . S 6 HOH A 8 227 8 HOH HOH . S 6 HOH A 9 228 9 HOH HOH . S 6 HOH A 10 229 10 HOH HOH . S 6 HOH A 11 230 11 HOH HOH . S 6 HOH A 12 231 12 HOH HOH . S 6 HOH A 13 232 13 HOH HOH . S 6 HOH A 14 233 14 HOH HOH . S 6 HOH A 15 234 15 HOH HOH . S 6 HOH A 16 235 16 HOH HOH . S 6 HOH A 17 236 17 HOH HOH . S 6 HOH A 18 237 18 HOH HOH . S 6 HOH A 19 238 19 HOH HOH . S 6 HOH A 20 239 20 HOH HOH . S 6 HOH A 21 240 21 HOH HOH . S 6 HOH A 22 241 22 HOH HOH . S 6 HOH A 23 242 23 HOH HOH . S 6 HOH A 24 243 24 HOH HOH . S 6 HOH A 25 244 25 HOH HOH . S 6 HOH A 26 245 26 HOH HOH . S 6 HOH A 27 246 27 HOH HOH . S 6 HOH A 28 247 28 HOH HOH . S 6 HOH A 29 248 29 HOH HOH . S 6 HOH A 30 249 30 HOH HOH . S 6 HOH A 31 250 31 HOH HOH . S 6 HOH A 32 251 32 HOH HOH . S 6 HOH A 33 252 33 HOH HOH . S 6 HOH A 34 253 34 HOH HOH . S 6 HOH A 35 254 35 HOH HOH . S 6 HOH A 36 255 36 HOH HOH . S 6 HOH A 37 256 37 HOH HOH . S 6 HOH A 38 257 38 HOH HOH . S 6 HOH A 39 258 39 HOH HOH . S 6 HOH A 40 259 40 HOH HOH . S 6 HOH A 41 260 41 HOH HOH . S 6 HOH A 42 261 42 HOH HOH . S 6 HOH A 43 262 43 HOH HOH . S 6 HOH A 44 263 44 HOH HOH . S 6 HOH A 45 264 45 HOH HOH . S 6 HOH A 46 265 46 HOH HOH . S 6 HOH A 47 266 47 HOH HOH . S 6 HOH A 48 267 48 HOH HOH . S 6 HOH A 49 268 49 HOH HOH . S 6 HOH A 50 269 50 HOH HOH . S 6 HOH A 51 270 51 HOH HOH . S 6 HOH A 52 271 52 HOH HOH . S 6 HOH A 53 272 53 HOH HOH . S 6 HOH A 54 273 54 HOH HOH . S 6 HOH A 55 274 55 HOH HOH . S 6 HOH A 56 275 56 HOH HOH . S 6 HOH A 57 276 57 HOH HOH . S 6 HOH A 58 277 58 HOH HOH . S 6 HOH A 59 278 59 HOH HOH . S 6 HOH A 60 279 60 HOH HOH . S 6 HOH A 61 280 61 HOH HOH . S 6 HOH A 62 281 62 HOH HOH . S 6 HOH A 63 282 63 HOH HOH . S 6 HOH A 64 283 64 HOH HOH . S 6 HOH A 65 284 65 HOH HOH . S 6 HOH A 66 285 66 HOH HOH . S 6 HOH A 67 286 67 HOH HOH . S 6 HOH A 68 287 68 HOH HOH . S 6 HOH A 69 288 69 HOH HOH . S 6 HOH A 70 289 70 HOH HOH . S 6 HOH A 71 290 71 HOH HOH . S 6 HOH A 72 291 72 HOH HOH . S 6 HOH A 73 292 73 HOH HOH . S 6 HOH A 74 293 74 HOH HOH . S 6 HOH A 75 294 75 HOH HOH . S 6 HOH A 76 295 76 HOH HOH . S 6 HOH A 77 296 77 HOH HOH . S 6 HOH A 78 297 78 HOH HOH . S 6 HOH A 79 298 79 HOH HOH . S 6 HOH A 80 299 80 HOH HOH . S 6 HOH A 81 300 81 HOH HOH . S 6 HOH A 82 301 82 HOH HOH . S 6 HOH A 83 303 83 HOH HOH . S 6 HOH A 84 304 84 HOH HOH . S 6 HOH A 85 305 85 HOH HOH . S 6 HOH A 86 306 86 HOH HOH . S 6 HOH A 87 307 87 HOH HOH . S 6 HOH A 88 308 88 HOH HOH . S 6 HOH A 89 309 89 HOH HOH . S 6 HOH A 90 310 90 HOH HOH . S 6 HOH A 91 311 91 HOH HOH . S 6 HOH A 92 312 92 HOH HOH . S 6 HOH A 93 313 93 HOH HOH . S 6 HOH A 94 314 94 HOH HOH . S 6 HOH A 95 315 95 HOH HOH . S 6 HOH A 96 316 96 HOH HOH . S 6 HOH A 97 317 97 HOH HOH . S 6 HOH A 98 318 98 HOH HOH . S 6 HOH A 99 319 99 HOH HOH . S 6 HOH A 100 320 100 HOH HOH . S 6 HOH A 101 321 101 HOH HOH . S 6 HOH A 102 322 102 HOH HOH . S 6 HOH A 103 323 103 HOH HOH . S 6 HOH A 104 324 104 HOH HOH . S 6 HOH A 105 325 105 HOH HOH . S 6 HOH A 106 326 106 HOH HOH . S 6 HOH A 107 327 107 HOH HOH . S 6 HOH A 108 328 108 HOH HOH . S 6 HOH A 109 329 109 HOH HOH . S 6 HOH A 110 330 110 HOH HOH . S 6 HOH A 111 331 111 HOH HOH . S 6 HOH A 112 332 112 HOH HOH . S 6 HOH A 113 333 113 HOH HOH . S 6 HOH A 114 334 114 HOH HOH . S 6 HOH A 115 335 115 HOH HOH . S 6 HOH A 116 336 116 HOH HOH . S 6 HOH A 117 337 117 HOH HOH . S 6 HOH A 118 338 118 HOH HOH . S 6 HOH A 119 339 119 HOH HOH . S 6 HOH A 120 340 120 HOH HOH . S 6 HOH A 121 341 121 HOH HOH . S 6 HOH A 122 342 122 HOH HOH . S 6 HOH A 123 343 123 HOH HOH . S 6 HOH A 124 344 124 HOH HOH . S 6 HOH A 125 345 125 HOH HOH . S 6 HOH A 126 346 126 HOH HOH . S 6 HOH A 127 347 127 HOH HOH . S 6 HOH A 128 348 128 HOH HOH . S 6 HOH A 129 349 130 HOH HOH . S 6 HOH A 130 350 131 HOH HOH . S 6 HOH A 131 351 133 HOH HOH . S 6 HOH A 132 352 134 HOH HOH . S 6 HOH A 133 353 135 HOH HOH . S 6 HOH A 134 354 136 HOH HOH . S 6 HOH A 135 355 137 HOH HOH . S 6 HOH A 136 356 138 HOH HOH . S 6 HOH A 137 357 139 HOH HOH . S 6 HOH A 138 358 140 HOH HOH . S 6 HOH A 139 359 141 HOH HOH . S 6 HOH A 140 360 143 HOH HOH . S 6 HOH A 141 361 144 HOH HOH . S 6 HOH A 142 362 145 HOH HOH . S 6 HOH A 143 363 146 HOH HOH . S 6 HOH A 144 364 147 HOH HOH . S 6 HOH A 145 365 148 HOH HOH . S 6 HOH A 146 366 149 HOH HOH . S 6 HOH A 147 367 150 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 2 _atom_site.Cartn_x 31.077 _atom_site.Cartn_y 6.36 _atom_site.Cartn_z 1.305 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 218 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #