data_3HY8 # _model_server_result.job_id 17vjFzLCpVN7QtEs_o0G1g _model_server_result.datetime_utc '2025-03-06 10:14:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hy8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":360}' # _entry.id 3HY8 # _exptl.entry_id 3HY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HY8 _cell.length_a 82.27 _cell.length_b 82.27 _cell.length_c 58.788 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 39.192 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 340 n n P O2 PO4 sing 341 n n P O3 PO4 sing 342 n n P O4 PO4 sing 343 n n # _atom_sites.entry_id 3HY8 _atom_sites.fract_transf_matrix[1][1] 0.012155 _atom_sites.fract_transf_matrix[1][2] 0.007018 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 390 390 FMN FMN . C 3 PLP A 1 350 350 PLP PLP . D 4 PO4 A 1 360 360 PO4 PO4 . E 4 PO4 A 1 370 370 PO4 PO4 . F 4 PO4 A 1 380 380 PO4 PO4 . G 5 HOH A 1 263 263 HOH HOH . G 5 HOH A 2 266 266 HOH HOH . G 5 HOH A 3 269 269 HOH HOH . G 5 HOH A 4 271 271 HOH HOH . G 5 HOH A 5 272 272 HOH HOH . G 5 HOH A 6 273 273 HOH HOH . G 5 HOH A 7 274 274 HOH HOH . G 5 HOH A 8 278 278 HOH HOH . G 5 HOH A 9 279 279 HOH HOH . G 5 HOH A 10 280 280 HOH HOH . G 5 HOH A 11 281 281 HOH HOH . G 5 HOH A 12 282 282 HOH HOH . G 5 HOH A 13 283 283 HOH HOH . G 5 HOH A 14 284 284 HOH HOH . G 5 HOH A 15 287 287 HOH HOH . G 5 HOH A 16 288 288 HOH HOH . G 5 HOH A 17 289 289 HOH HOH . G 5 HOH A 18 290 290 HOH HOH . G 5 HOH A 19 292 292 HOH HOH . G 5 HOH A 20 293 293 HOH HOH . G 5 HOH A 21 294 294 HOH HOH . G 5 HOH A 22 295 295 HOH HOH . G 5 HOH A 23 296 296 HOH HOH . G 5 HOH A 24 297 297 HOH HOH . G 5 HOH A 25 298 298 HOH HOH . G 5 HOH A 26 299 299 HOH HOH . G 5 HOH A 27 300 300 HOH HOH . G 5 HOH A 28 301 301 HOH HOH . G 5 HOH A 29 302 302 HOH HOH . G 5 HOH A 30 304 304 HOH HOH . G 5 HOH A 31 305 305 HOH HOH . G 5 HOH A 32 306 306 HOH HOH . G 5 HOH A 33 308 308 HOH HOH . G 5 HOH A 34 309 309 HOH HOH . G 5 HOH A 35 310 310 HOH HOH . G 5 HOH A 36 311 311 HOH HOH . G 5 HOH A 37 316 316 HOH HOH . G 5 HOH A 38 317 317 HOH HOH . G 5 HOH A 39 318 318 HOH HOH . G 5 HOH A 40 320 320 HOH HOH . G 5 HOH A 41 322 322 HOH HOH . G 5 HOH A 42 323 323 HOH HOH . G 5 HOH A 43 324 324 HOH HOH . G 5 HOH A 44 325 325 HOH HOH . G 5 HOH A 45 326 326 HOH HOH . G 5 HOH A 46 327 327 HOH HOH . G 5 HOH A 47 328 328 HOH HOH . G 5 HOH A 48 329 329 HOH HOH . G 5 HOH A 49 331 331 HOH HOH . G 5 HOH A 50 333 333 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 27.793 15.648 34.642 1 99.62 ? P PO4 360 A 1 HETATM 2 O O1 PO4 . . . D 4 28.314 15.861 33.246 1 97.96 ? O1 PO4 360 A 1 HETATM 3 O O2 PO4 . . . D 4 26.326 15.319 34.583 1 97.54 ? O2 PO4 360 A 1 HETATM 4 O O3 PO4 . . . D 4 28.036 16.873 35.493 1 99.62 ? O3 PO4 360 A 1 HETATM 5 O O4 PO4 . . . D 4 28.503 14.46 35.242 1 99.62 ? O4 PO4 360 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #