data_3HYJ # _model_server_result.job_id UFlaS75TJI7cXAfMWStyGw _model_server_result.datetime_utc '2025-04-11 22:52:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hyj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":199}' # _entry.id 3HYJ # _exptl.entry_id 3HYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HYJ _cell.length_a 50.448 _cell.length_b 79.899 _cell.length_c 115.426 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 131 A HIS 131 1_555 D NA NA . A NA 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 A ND1 HIS 133 A HIS 133 1_555 D NA NA . A NA 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HYJ _atom_sites.fract_transf_matrix[1][1] 0.019822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 3731 3731 GOL GOL . D 3 NA A 1 199 1 NA NA . E 4 CL D 1 199 1 CL CL . F 2 GOL D 1 3731 3731 GOL GOL . G 4 CL D 1 200 1 CL CL . H 5 HOH A 1 200 9 HOH HOH . H 5 HOH A 2 201 15 HOH HOH . H 5 HOH A 3 202 18 HOH HOH . H 5 HOH A 4 203 19 HOH HOH . H 5 HOH A 5 204 20 HOH HOH . H 5 HOH A 6 205 22 HOH HOH . H 5 HOH A 7 206 40 HOH HOH . H 5 HOH A 8 207 42 HOH HOH . H 5 HOH A 9 208 44 HOH HOH . H 5 HOH A 10 209 51 HOH HOH . H 5 HOH A 11 210 56 HOH HOH . H 5 HOH A 12 211 57 HOH HOH . H 5 HOH A 13 212 69 HOH HOH . H 5 HOH A 14 213 75 HOH HOH . H 5 HOH A 15 214 77 HOH HOH . H 5 HOH A 16 215 78 HOH HOH . H 5 HOH A 17 216 92 HOH HOH . H 5 HOH A 18 217 96 HOH HOH . H 5 HOH A 19 218 98 HOH HOH . H 5 HOH A 20 219 108 HOH HOH . H 5 HOH A 21 220 117 HOH HOH . H 5 HOH A 22 221 119 HOH HOH . H 5 HOH A 23 222 120 HOH HOH . H 5 HOH A 24 223 123 HOH HOH . H 5 HOH A 25 224 124 HOH HOH . H 5 HOH A 26 225 125 HOH HOH . H 5 HOH A 27 226 127 HOH HOH . H 5 HOH A 28 227 128 HOH HOH . H 5 HOH A 29 228 133 HOH HOH . H 5 HOH A 30 229 134 HOH HOH . H 5 HOH A 31 230 135 HOH HOH . H 5 HOH A 32 231 137 HOH HOH . I 5 HOH D 1 201 2 HOH HOH . I 5 HOH D 2 202 5 HOH HOH . I 5 HOH D 3 203 7 HOH HOH . I 5 HOH D 4 204 10 HOH HOH . I 5 HOH D 5 205 14 HOH HOH . I 5 HOH D 6 206 21 HOH HOH . I 5 HOH D 7 207 23 HOH HOH . I 5 HOH D 8 208 29 HOH HOH . I 5 HOH D 9 209 30 HOH HOH . I 5 HOH D 10 210 34 HOH HOH . I 5 HOH D 11 211 52 HOH HOH . I 5 HOH D 12 212 54 HOH HOH . I 5 HOH D 13 213 58 HOH HOH . I 5 HOH D 14 214 60 HOH HOH . I 5 HOH D 15 215 73 HOH HOH . I 5 HOH D 16 216 93 HOH HOH . I 5 HOH D 17 217 103 HOH HOH . I 5 HOH D 18 218 110 HOH HOH . I 5 HOH D 19 219 112 HOH HOH . I 5 HOH D 20 220 114 HOH HOH . I 5 HOH D 21 221 122 HOH HOH . I 5 HOH D 22 222 131 HOH HOH . I 5 HOH D 23 223 132 HOH HOH . I 5 HOH D 24 224 136 HOH HOH . I 5 HOH D 25 225 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 8.58 _atom_site.Cartn_y 36.837 _atom_site.Cartn_z 41.531 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 7.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 199 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #