data_3HYT # _model_server_result.job_id iN1cZCV9ZQPFTzofS79KUg _model_server_result.datetime_utc '2025-06-29 16:41:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":802}' # _entry.id 3HYT # _exptl.entry_id 3HYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.95 _cell.angle_gamma 90 _cell.entry_id 3HYT _cell.length_a 76 _cell.length_b 46.41 _cell.length_c 120.07 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 E MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 D O1G AGO . A AGO 801 1_555 E MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc3 B OG1 THR 17 B THR 17 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc4 K O HOH . B HOH 307 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc5 F O2B AGO . B AGO 801 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc6 F O1G AGO . B AGO 801 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc7 C OG1 THR 17 C THR 17 1_555 I MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 H N3B AGO . C AGO 801 1_555 I MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc9 H O1G AGO . C AGO 801 1_555 I MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HYT _atom_sites.fract_transf_matrix[1][1] 0.013158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00114 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 AGO A 1 801 801 AGO AGO . E 3 MG A 1 802 802 MG MG . F 2 AGO B 1 801 801 AGO AGO . G 3 MG B 1 802 802 MG MG . H 2 AGO C 1 801 801 AGO AGO . I 3 MG C 1 802 802 MG MG . J 4 HOH A 1 271 2 HOH HOH . J 4 HOH A 2 272 3 HOH HOH . J 4 HOH A 3 273 5 HOH HOH . J 4 HOH A 4 274 7 HOH HOH . J 4 HOH A 5 275 9 HOH HOH . J 4 HOH A 6 276 11 HOH HOH . J 4 HOH A 7 277 12 HOH HOH . J 4 HOH A 8 278 13 HOH HOH . J 4 HOH A 9 279 14 HOH HOH . J 4 HOH A 10 280 16 HOH HOH . J 4 HOH A 11 281 18 HOH HOH . J 4 HOH A 12 282 19 HOH HOH . J 4 HOH A 13 283 25 HOH HOH . J 4 HOH A 14 284 26 HOH HOH . J 4 HOH A 15 285 31 HOH HOH . J 4 HOH A 16 286 33 HOH HOH . J 4 HOH A 17 287 37 HOH HOH . J 4 HOH A 18 288 39 HOH HOH . J 4 HOH A 19 289 40 HOH HOH . J 4 HOH A 20 290 43 HOH HOH . J 4 HOH A 21 291 47 HOH HOH . J 4 HOH A 22 292 59 HOH HOH . J 4 HOH A 23 293 60 HOH HOH . J 4 HOH A 24 294 62 HOH HOH . J 4 HOH A 25 295 64 HOH HOH . J 4 HOH A 26 296 67 HOH HOH . J 4 HOH A 27 297 71 HOH HOH . J 4 HOH A 28 298 73 HOH HOH . J 4 HOH A 29 299 76 HOH HOH . J 4 HOH A 30 300 85 HOH HOH . J 4 HOH A 31 301 86 HOH HOH . J 4 HOH A 32 302 91 HOH HOH . J 4 HOH A 33 303 93 HOH HOH . J 4 HOH A 34 304 94 HOH HOH . J 4 HOH A 35 305 95 HOH HOH . J 4 HOH A 36 306 96 HOH HOH . J 4 HOH A 37 307 98 HOH HOH . J 4 HOH A 38 308 100 HOH HOH . J 4 HOH A 39 309 103 HOH HOH . J 4 HOH A 40 310 113 HOH HOH . J 4 HOH A 41 311 120 HOH HOH . J 4 HOH A 42 312 123 HOH HOH . J 4 HOH A 43 313 124 HOH HOH . J 4 HOH A 44 314 129 HOH HOH . J 4 HOH A 45 315 130 HOH HOH . J 4 HOH A 46 316 131 HOH HOH . J 4 HOH A 47 317 132 HOH HOH . J 4 HOH A 48 318 139 HOH HOH . K 4 HOH B 1 271 1 HOH HOH . K 4 HOH B 2 272 6 HOH HOH . K 4 HOH B 3 273 8 HOH HOH . K 4 HOH B 4 274 10 HOH HOH . K 4 HOH B 5 275 17 HOH HOH . K 4 HOH B 6 276 20 HOH HOH . K 4 HOH B 7 277 22 HOH HOH . K 4 HOH B 8 278 28 HOH HOH . K 4 HOH B 9 279 32 HOH HOH . K 4 HOH B 10 280 35 HOH HOH . K 4 HOH B 11 281 36 HOH HOH . K 4 HOH B 12 282 38 HOH HOH . K 4 HOH B 13 283 42 HOH HOH . K 4 HOH B 14 284 44 HOH HOH . K 4 HOH B 15 285 51 HOH HOH . K 4 HOH B 16 286 53 HOH HOH . K 4 HOH B 17 287 63 HOH HOH . K 4 HOH B 18 288 65 HOH HOH . K 4 HOH B 19 289 69 HOH HOH . K 4 HOH B 20 290 70 HOH HOH . K 4 HOH B 21 291 72 HOH HOH . K 4 HOH B 22 292 77 HOH HOH . K 4 HOH B 23 293 80 HOH HOH . K 4 HOH B 24 294 83 HOH HOH . K 4 HOH B 25 295 84 HOH HOH . K 4 HOH B 26 296 89 HOH HOH . K 4 HOH B 27 297 90 HOH HOH . K 4 HOH B 28 298 92 HOH HOH . K 4 HOH B 29 299 97 HOH HOH . K 4 HOH B 30 300 99 HOH HOH . K 4 HOH B 31 301 104 HOH HOH . K 4 HOH B 32 302 111 HOH HOH . K 4 HOH B 33 303 112 HOH HOH . K 4 HOH B 34 304 116 HOH HOH . K 4 HOH B 35 305 118 HOH HOH . K 4 HOH B 36 306 119 HOH HOH . K 4 HOH B 37 307 135 HOH HOH . K 4 HOH B 38 308 140 HOH HOH . L 4 HOH C 1 271 21 HOH HOH . L 4 HOH C 2 272 30 HOH HOH . L 4 HOH C 3 273 41 HOH HOH . L 4 HOH C 4 274 45 HOH HOH . L 4 HOH C 5 275 49 HOH HOH . L 4 HOH C 6 276 54 HOH HOH . L 4 HOH C 7 277 55 HOH HOH . L 4 HOH C 8 278 61 HOH HOH . L 4 HOH C 9 279 66 HOH HOH . L 4 HOH C 10 280 74 HOH HOH . L 4 HOH C 11 281 79 HOH HOH . L 4 HOH C 12 282 81 HOH HOH . L 4 HOH C 13 283 82 HOH HOH . L 4 HOH C 14 284 88 HOH HOH . L 4 HOH C 15 285 114 HOH HOH . L 4 HOH C 16 286 115 HOH HOH . L 4 HOH C 17 287 133 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x -35.702 _atom_site.Cartn_y 32.073 _atom_site.Cartn_z -48.36 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 30.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 802 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #