data_3HZ3 # _model_server_result.job_id ihbnj5K9i5iPsPAcJBVYjA _model_server_result.datetime_utc '2024-11-30 15:45:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3HZ3 # _exptl.entry_id 3HZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 107.13 _cell.angle_beta 101.37 _cell.angle_gamma 85.4 _cell.entry_id 3HZ3 _cell.length_a 57.782 _cell.length_b 66.233 _cell.length_c 82.724 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC B 1 SUC 2 n B FRU 2 B 2 FRU B 1 SUC 2 n C GLC 1 C 1 GLC D 1 SUC 2 n C FRU 2 C 2 FRU D 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 GLC . B GLC 1 1_555 B O2 FRU . B FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 sing covale ? covale2 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 sing metalc ? metalc1 D CA CA . A CA 1 1_555 E O HOH . A HOH 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 D CA CA . A CA 1 1_555 A OE2 GLU 240 A GLU 979 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc3 D CA CA . A CA 1 1_555 A O GLU 240 A GLU 979 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 D CA CA . A CA 1 1_555 A OD1 ASP 246 A ASP 985 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 D CA CA . A CA 1 1_555 A OD2 ASP 246 A ASP 985 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc6 D CA CA . A CA 1 1_555 A O ASN 290 A ASN 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc7 D CA CA . A CA 1 1_555 A OD2 ASP 769 A ASP 1508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HZ3 _atom_sites.fract_transf_matrix[1][1] 0.017306 _atom_sites.fract_transf_matrix[1][2] -0.001392 _atom_sites.fract_transf_matrix[1][3] 0.003217 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015147 _atom_sites.fract_transf_matrix[2][3] 0.004508 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CA A 1 1 1 CA CA . E 4 HOH A 1 2 2 HOH HOH . E 4 HOH A 2 3 3 HOH HOH . E 4 HOH A 3 4 4 HOH HOH . E 4 HOH A 4 5 5 HOH HOH . E 4 HOH A 5 6 6 HOH HOH . E 4 HOH A 6 7 7 HOH HOH . E 4 HOH A 7 8 8 HOH HOH . E 4 HOH A 8 9 9 HOH HOH . E 4 HOH A 9 10 10 HOH HOH . E 4 HOH A 10 11 11 HOH HOH . E 4 HOH A 11 12 12 HOH HOH . E 4 HOH A 12 13 13 HOH HOH . E 4 HOH A 13 14 14 HOH HOH . E 4 HOH A 14 15 15 HOH HOH . E 4 HOH A 15 16 16 HOH HOH . E 4 HOH A 16 17 17 HOH HOH . E 4 HOH A 17 18 18 HOH HOH . E 4 HOH A 18 19 19 HOH HOH . E 4 HOH A 19 20 20 HOH HOH . E 4 HOH A 20 21 21 HOH HOH . E 4 HOH A 21 22 22 HOH HOH . E 4 HOH A 22 23 23 HOH HOH . E 4 HOH A 23 24 24 HOH HOH . E 4 HOH A 24 25 25 HOH HOH . E 4 HOH A 25 26 26 HOH HOH . E 4 HOH A 26 27 27 HOH HOH . E 4 HOH A 27 28 28 HOH HOH . E 4 HOH A 28 29 29 HOH HOH . E 4 HOH A 29 30 30 HOH HOH . E 4 HOH A 30 31 31 HOH HOH . E 4 HOH A 31 32 32 HOH HOH . E 4 HOH A 32 33 33 HOH HOH . E 4 HOH A 33 34 34 HOH HOH . E 4 HOH A 34 35 35 HOH HOH . E 4 HOH A 35 36 36 HOH HOH . E 4 HOH A 36 37 37 HOH HOH . E 4 HOH A 37 38 38 HOH HOH . E 4 HOH A 38 39 39 HOH HOH . E 4 HOH A 39 40 40 HOH HOH . E 4 HOH A 40 41 41 HOH HOH . E 4 HOH A 41 42 42 HOH HOH . E 4 HOH A 42 43 43 HOH HOH . E 4 HOH A 43 44 44 HOH HOH . E 4 HOH A 44 45 45 HOH HOH . E 4 HOH A 45 46 46 HOH HOH . E 4 HOH A 46 47 47 HOH HOH . E 4 HOH A 47 48 48 HOH HOH . E 4 HOH A 48 49 49 HOH HOH . E 4 HOH A 49 50 50 HOH HOH . E 4 HOH A 50 51 51 HOH HOH . E 4 HOH A 51 52 52 HOH HOH . E 4 HOH A 52 53 53 HOH HOH . E 4 HOH A 53 54 54 HOH HOH . E 4 HOH A 54 55 55 HOH HOH . E 4 HOH A 55 56 56 HOH HOH . E 4 HOH A 56 57 57 HOH HOH . E 4 HOH A 57 58 58 HOH HOH . E 4 HOH A 58 59 59 HOH HOH . E 4 HOH A 59 60 60 HOH HOH . E 4 HOH A 60 61 61 HOH HOH . E 4 HOH A 61 62 62 HOH HOH . E 4 HOH A 62 63 63 HOH HOH . E 4 HOH A 63 64 64 HOH HOH . E 4 HOH A 64 65 65 HOH HOH . E 4 HOH A 65 66 66 HOH HOH . E 4 HOH A 66 67 67 HOH HOH . E 4 HOH A 67 68 68 HOH HOH . E 4 HOH A 68 69 69 HOH HOH . E 4 HOH A 69 70 70 HOH HOH . E 4 HOH A 70 71 71 HOH HOH . E 4 HOH A 71 72 72 HOH HOH . E 4 HOH A 72 73 73 HOH HOH . E 4 HOH A 73 74 74 HOH HOH . E 4 HOH A 74 75 75 HOH HOH . E 4 HOH A 75 76 76 HOH HOH . E 4 HOH A 76 77 77 HOH HOH . E 4 HOH A 77 78 78 HOH HOH . E 4 HOH A 78 79 79 HOH HOH . E 4 HOH A 79 80 80 HOH HOH . E 4 HOH A 80 81 81 HOH HOH . E 4 HOH A 81 82 82 HOH HOH . E 4 HOH A 82 83 83 HOH HOH . E 4 HOH A 83 84 84 HOH HOH . E 4 HOH A 84 85 85 HOH HOH . E 4 HOH A 85 86 86 HOH HOH . E 4 HOH A 86 87 87 HOH HOH . E 4 HOH A 87 88 88 HOH HOH . E 4 HOH A 88 89 89 HOH HOH . E 4 HOH A 89 90 90 HOH HOH . E 4 HOH A 90 91 91 HOH HOH . E 4 HOH A 91 92 92 HOH HOH . E 4 HOH A 92 93 93 HOH HOH . E 4 HOH A 93 94 94 HOH HOH . E 4 HOH A 94 95 95 HOH HOH . E 4 HOH A 95 96 96 HOH HOH . E 4 HOH A 96 97 97 HOH HOH . E 4 HOH A 97 98 98 HOH HOH . E 4 HOH A 98 99 99 HOH HOH . E 4 HOH A 99 100 100 HOH HOH . E 4 HOH A 100 101 101 HOH HOH . E 4 HOH A 101 102 102 HOH HOH . E 4 HOH A 102 103 103 HOH HOH . E 4 HOH A 103 104 104 HOH HOH . E 4 HOH A 104 105 105 HOH HOH . E 4 HOH A 105 106 106 HOH HOH . E 4 HOH A 106 107 107 HOH HOH . E 4 HOH A 107 108 108 HOH HOH . E 4 HOH A 108 109 109 HOH HOH . E 4 HOH A 109 110 110 HOH HOH . E 4 HOH A 110 111 111 HOH HOH . E 4 HOH A 111 112 112 HOH HOH . E 4 HOH A 112 113 113 HOH HOH . E 4 HOH A 113 114 114 HOH HOH . E 4 HOH A 114 115 115 HOH HOH . E 4 HOH A 115 116 116 HOH HOH . E 4 HOH A 116 117 117 HOH HOH . E 4 HOH A 117 118 118 HOH HOH . E 4 HOH A 118 119 119 HOH HOH . E 4 HOH A 119 120 120 HOH HOH . E 4 HOH A 120 121 121 HOH HOH . E 4 HOH A 121 122 122 HOH HOH . E 4 HOH A 122 123 123 HOH HOH . E 4 HOH A 123 124 124 HOH HOH . E 4 HOH A 124 125 125 HOH HOH . E 4 HOH A 125 126 126 HOH HOH . E 4 HOH A 126 127 127 HOH HOH . E 4 HOH A 127 128 128 HOH HOH . E 4 HOH A 128 129 129 HOH HOH . E 4 HOH A 129 130 130 HOH HOH . E 4 HOH A 130 131 131 HOH HOH . E 4 HOH A 131 132 132 HOH HOH . E 4 HOH A 132 133 133 HOH HOH . E 4 HOH A 133 134 134 HOH HOH . E 4 HOH A 134 135 135 HOH HOH . E 4 HOH A 135 136 136 HOH HOH . E 4 HOH A 136 137 137 HOH HOH . E 4 HOH A 137 138 138 HOH HOH . E 4 HOH A 138 139 139 HOH HOH . E 4 HOH A 139 140 140 HOH HOH . E 4 HOH A 140 141 141 HOH HOH . E 4 HOH A 141 142 142 HOH HOH . E 4 HOH A 142 143 143 HOH HOH . E 4 HOH A 143 144 144 HOH HOH . E 4 HOH A 144 145 145 HOH HOH . E 4 HOH A 145 146 146 HOH HOH . E 4 HOH A 146 147 147 HOH HOH . E 4 HOH A 147 148 148 HOH HOH . E 4 HOH A 148 149 149 HOH HOH . E 4 HOH A 149 151 151 HOH HOH . E 4 HOH A 150 152 152 HOH HOH . E 4 HOH A 151 153 153 HOH HOH . E 4 HOH A 152 154 154 HOH HOH . E 4 HOH A 153 155 155 HOH HOH . E 4 HOH A 154 156 156 HOH HOH . E 4 HOH A 155 157 157 HOH HOH . E 4 HOH A 156 158 158 HOH HOH . E 4 HOH A 157 159 159 HOH HOH . E 4 HOH A 158 160 160 HOH HOH . E 4 HOH A 159 161 161 HOH HOH . E 4 HOH A 160 162 162 HOH HOH . E 4 HOH A 161 163 163 HOH HOH . E 4 HOH A 162 164 164 HOH HOH . E 4 HOH A 163 165 165 HOH HOH . E 4 HOH A 164 166 166 HOH HOH . E 4 HOH A 165 167 167 HOH HOH . E 4 HOH A 166 168 168 HOH HOH . E 4 HOH A 167 169 169 HOH HOH . E 4 HOH A 168 170 170 HOH HOH . E 4 HOH A 169 171 171 HOH HOH . E 4 HOH A 170 172 172 HOH HOH . E 4 HOH A 171 173 173 HOH HOH . E 4 HOH A 172 174 174 HOH HOH . E 4 HOH A 173 175 175 HOH HOH . E 4 HOH A 174 176 176 HOH HOH . E 4 HOH A 175 177 177 HOH HOH . E 4 HOH A 176 178 178 HOH HOH . E 4 HOH A 177 179 179 HOH HOH . E 4 HOH A 178 180 180 HOH HOH . E 4 HOH A 179 181 181 HOH HOH . E 4 HOH A 180 182 182 HOH HOH . E 4 HOH A 181 183 183 HOH HOH . E 4 HOH A 182 184 184 HOH HOH . E 4 HOH A 183 185 185 HOH HOH . E 4 HOH A 184 186 186 HOH HOH . E 4 HOH A 185 187 187 HOH HOH . E 4 HOH A 186 188 188 HOH HOH . E 4 HOH A 187 189 189 HOH HOH . E 4 HOH A 188 190 190 HOH HOH . E 4 HOH A 189 191 191 HOH HOH . E 4 HOH A 190 192 192 HOH HOH . E 4 HOH A 191 193 193 HOH HOH . E 4 HOH A 192 194 194 HOH HOH . E 4 HOH A 193 195 195 HOH HOH . E 4 HOH A 194 196 196 HOH HOH . E 4 HOH A 195 197 197 HOH HOH . E 4 HOH A 196 198 198 HOH HOH . E 4 HOH A 197 199 199 HOH HOH . E 4 HOH A 198 200 200 HOH HOH . E 4 HOH A 199 201 201 HOH HOH . E 4 HOH A 200 202 202 HOH HOH . E 4 HOH A 201 203 203 HOH HOH . E 4 HOH A 202 204 204 HOH HOH . E 4 HOH A 203 205 205 HOH HOH . E 4 HOH A 204 206 206 HOH HOH . E 4 HOH A 205 207 207 HOH HOH . E 4 HOH A 206 208 208 HOH HOH . E 4 HOH A 207 209 209 HOH HOH . E 4 HOH A 208 210 210 HOH HOH . E 4 HOH A 209 211 211 HOH HOH . E 4 HOH A 210 212 212 HOH HOH . E 4 HOH A 211 213 213 HOH HOH . E 4 HOH A 212 214 214 HOH HOH . E 4 HOH A 213 215 215 HOH HOH . E 4 HOH A 214 216 216 HOH HOH . E 4 HOH A 215 217 217 HOH HOH . E 4 HOH A 216 218 218 HOH HOH . E 4 HOH A 217 219 219 HOH HOH . E 4 HOH A 218 220 220 HOH HOH . E 4 HOH A 219 221 221 HOH HOH . E 4 HOH A 220 222 222 HOH HOH . E 4 HOH A 221 223 223 HOH HOH . E 4 HOH A 222 224 224 HOH HOH . E 4 HOH A 223 225 225 HOH HOH . E 4 HOH A 224 226 226 HOH HOH . E 4 HOH A 225 227 227 HOH HOH . E 4 HOH A 226 228 228 HOH HOH . E 4 HOH A 227 229 229 HOH HOH . E 4 HOH A 228 230 230 HOH HOH . E 4 HOH A 229 231 231 HOH HOH . E 4 HOH A 230 232 232 HOH HOH . E 4 HOH A 231 233 233 HOH HOH . E 4 HOH A 232 234 234 HOH HOH . E 4 HOH A 233 235 235 HOH HOH . E 4 HOH A 234 236 236 HOH HOH . E 4 HOH A 235 237 237 HOH HOH . E 4 HOH A 236 238 238 HOH HOH . E 4 HOH A 237 239 239 HOH HOH . E 4 HOH A 238 240 240 HOH HOH . E 4 HOH A 239 241 241 HOH HOH . E 4 HOH A 240 242 242 HOH HOH . E 4 HOH A 241 243 243 HOH HOH . E 4 HOH A 242 244 244 HOH HOH . E 4 HOH A 243 245 245 HOH HOH . E 4 HOH A 244 246 246 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -13.375 _atom_site.Cartn_y -8.662 _atom_site.Cartn_z -3.686 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #