data_3HZ4 # _model_server_result.job_id tSY9NCRy9k7Dj5FvxeW3zg _model_server_result.datetime_utc '2024-10-14 07:28:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":142}' # _entry.id 3HZ4 # _exptl.entry_id 3HZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HZ4 _cell.length_a 82.068 _cell.length_b 82.068 _cell.length_c 93.874 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 13 A ASP 11 1_555 A N MSE 14 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 14 A MSE 12 1_555 A N THR 15 A THR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C VAL 29 A VAL 27 1_555 A N MSE 30 A MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale4 A C MSE 30 A MSE 28 1_555 A N PHE 31 A PHE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale5 A C ALA 41 A ALA 39 1_555 A N MSE 42 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale6 A C MSE 42 A MSE 40 1_555 A N GLU 43 A GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C ASP 109 A ASP 107 1_555 A N MSE 110 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 A C MSE 110 A MSE 108 1_555 A N LEU 111 A LEU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C ASP 13 B ASP 11 1_555 B N MSE 14 B MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C MSE 14 B MSE 12 1_555 B N THR 15 B THR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C VAL 29 B VAL 27 1_555 B N MSE 30 B MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale12 B C MSE 30 B MSE 28 1_555 B N PHE 31 B PHE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale13 B C ALA 41 B ALA 39 1_555 B N MSE 42 B MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 B C MSE 42 B MSE 40 1_555 B N GLU 43 B GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale15 B C ASP 109 B ASP 107 1_555 B N MSE 110 B MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale16 B C MSE 110 B MSE 108 1_555 B N LEU 111 B LEU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3HZ4 _atom_sites.fract_transf_matrix[1][1] 0.012185 _atom_sites.fract_transf_matrix[1][2] 0.007035 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO B 1 142 142 EDO EDO . D 2 EDO B 1 143 143 EDO EDO . E 2 EDO B 1 144 144 EDO EDO . F 3 HOH A 1 139 1 HOH HOH . F 3 HOH A 2 142 142 HOH HOH . F 3 HOH A 3 143 143 HOH HOH . F 3 HOH A 4 144 144 HOH HOH . F 3 HOH A 5 145 145 HOH HOH . F 3 HOH A 6 146 146 HOH HOH . F 3 HOH A 7 147 147 HOH HOH . F 3 HOH A 8 148 148 HOH HOH . F 3 HOH A 9 149 149 HOH HOH . F 3 HOH A 10 150 150 HOH HOH . F 3 HOH A 11 151 151 HOH HOH . F 3 HOH A 12 152 152 HOH HOH . F 3 HOH A 13 153 153 HOH HOH . F 3 HOH A 14 154 154 HOH HOH . F 3 HOH A 15 155 155 HOH HOH . F 3 HOH A 16 156 156 HOH HOH . F 3 HOH A 17 157 157 HOH HOH . F 3 HOH A 18 158 158 HOH HOH . F 3 HOH A 19 159 159 HOH HOH . F 3 HOH A 20 160 160 HOH HOH . F 3 HOH A 21 161 161 HOH HOH . F 3 HOH A 22 162 162 HOH HOH . F 3 HOH A 23 163 163 HOH HOH . F 3 HOH A 24 164 164 HOH HOH . F 3 HOH A 25 165 165 HOH HOH . F 3 HOH A 26 166 166 HOH HOH . F 3 HOH A 27 167 167 HOH HOH . F 3 HOH A 28 168 168 HOH HOH . F 3 HOH A 29 169 169 HOH HOH . F 3 HOH A 30 170 170 HOH HOH . F 3 HOH A 31 171 171 HOH HOH . F 3 HOH A 32 172 172 HOH HOH . F 3 HOH A 33 173 173 HOH HOH . F 3 HOH A 34 174 174 HOH HOH . F 3 HOH A 35 175 175 HOH HOH . F 3 HOH A 36 176 176 HOH HOH . F 3 HOH A 37 177 177 HOH HOH . F 3 HOH A 38 178 178 HOH HOH . F 3 HOH A 39 179 179 HOH HOH . F 3 HOH A 40 180 180 HOH HOH . F 3 HOH A 41 181 181 HOH HOH . F 3 HOH A 42 182 182 HOH HOH . F 3 HOH A 43 183 183 HOH HOH . F 3 HOH A 44 184 184 HOH HOH . F 3 HOH A 45 185 185 HOH HOH . F 3 HOH A 46 186 186 HOH HOH . F 3 HOH A 47 187 187 HOH HOH . F 3 HOH A 48 188 188 HOH HOH . F 3 HOH A 49 189 189 HOH HOH . F 3 HOH A 50 190 190 HOH HOH . F 3 HOH A 51 191 191 HOH HOH . F 3 HOH A 52 192 192 HOH HOH . F 3 HOH A 53 193 193 HOH HOH . F 3 HOH A 54 194 194 HOH HOH . F 3 HOH A 55 195 195 HOH HOH . G 3 HOH B 1 145 145 HOH HOH . G 3 HOH B 2 146 146 HOH HOH . G 3 HOH B 3 147 147 HOH HOH . G 3 HOH B 4 148 148 HOH HOH . G 3 HOH B 5 149 149 HOH HOH . G 3 HOH B 6 150 150 HOH HOH . G 3 HOH B 7 151 151 HOH HOH . G 3 HOH B 8 152 152 HOH HOH . G 3 HOH B 9 153 153 HOH HOH . G 3 HOH B 10 154 154 HOH HOH . G 3 HOH B 11 155 155 HOH HOH . G 3 HOH B 12 156 156 HOH HOH . G 3 HOH B 13 157 157 HOH HOH . G 3 HOH B 14 158 158 HOH HOH . G 3 HOH B 15 159 159 HOH HOH . G 3 HOH B 16 160 160 HOH HOH . G 3 HOH B 17 161 161 HOH HOH . G 3 HOH B 18 162 162 HOH HOH . G 3 HOH B 19 163 163 HOH HOH . G 3 HOH B 20 164 164 HOH HOH . G 3 HOH B 21 165 165 HOH HOH . G 3 HOH B 22 166 166 HOH HOH . G 3 HOH B 23 167 167 HOH HOH . G 3 HOH B 24 168 168 HOH HOH . G 3 HOH B 25 169 169 HOH HOH . G 3 HOH B 26 170 170 HOH HOH . G 3 HOH B 27 171 171 HOH HOH . G 3 HOH B 28 172 172 HOH HOH . G 3 HOH B 29 173 173 HOH HOH . G 3 HOH B 30 174 174 HOH HOH . G 3 HOH B 31 175 175 HOH HOH . G 3 HOH B 32 176 176 HOH HOH . G 3 HOH B 33 177 177 HOH HOH . G 3 HOH B 34 178 178 HOH HOH . G 3 HOH B 35 179 179 HOH HOH . G 3 HOH B 36 180 180 HOH HOH . G 3 HOH B 37 181 181 HOH HOH . G 3 HOH B 38 182 182 HOH HOH . G 3 HOH B 39 183 183 HOH HOH . G 3 HOH B 40 184 184 HOH HOH . G 3 HOH B 41 185 185 HOH HOH . G 3 HOH B 42 186 186 HOH HOH . G 3 HOH B 43 187 187 HOH HOH . G 3 HOH B 44 188 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 -52.882 -17.913 10.064 1 52.76 ? C1 EDO 142 B 1 HETATM 2 O O1 EDO . . . C 2 -51.712 -17.314 10.678 1 51.19 ? O1 EDO 142 B 1 HETATM 3 C C2 EDO . . . C 2 -53.791 -18.535 11.124 1 51.46 ? C2 EDO 142 B 1 HETATM 4 O O2 EDO . . . C 2 -53.798 -17.649 12.255 1 52 ? O2 EDO 142 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #