data_3HZD # _model_server_result.job_id '_D1WPGNsA4VcuL7Dsos38Q' _model_server_result.datetime_utc '2024-12-03 00:43:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hzd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3HZD # _exptl.entry_id 3HZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 6.941 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LITHIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HZD _cell.length_a 55.671 _cell.length_b 55.671 _cell.length_c 127.836 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 121 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf8 B SG CYS 26 B CYS 27 1_555 B SG CYS 115 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf9 B SG CYS 28 B CYS 29 1_555 B SG CYS 44 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf10 B SG CYS 43 B CYS 44 1_555 B SG CYS 95 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf11 B SG CYS 49 B CYS 50 1_555 B SG CYS 121 B CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf12 B SG CYS 50 B CYS 51 1_555 B SG CYS 88 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf13 B SG CYS 57 B CYS 61 1_555 B SG CYS 81 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf14 B SG CYS 75 B CYS 84 1_555 B SG CYS 86 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'Li 1' _chem_comp.formula_weight 6.941 _chem_comp.id LI _chem_comp.mon_nstd_flag . _chem_comp.name 'LITHIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HZD _atom_sites.fract_transf_matrix[1][1] 0.017963 _atom_sites.fract_transf_matrix[1][2] 0.010371 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LI B 1 201 201 LI LI . D 3 HOH A 1 301 14 HOH HOH . D 3 HOH A 2 302 54 HOH HOH . D 3 HOH A 3 303 55 HOH HOH . D 3 HOH A 4 304 62 HOH HOH . D 3 HOH A 5 305 64 HOH HOH . D 3 HOH A 6 306 89 HOH HOH . D 3 HOH A 7 307 124 HOH HOH . D 3 HOH A 8 308 1 HOH HOH . D 3 HOH A 9 309 8 HOH HOH . D 3 HOH A 10 310 136 HOH HOH . D 3 HOH A 11 311 137 HOH HOH . D 3 HOH A 12 312 11 HOH HOH . D 3 HOH A 13 313 139 HOH HOH . D 3 HOH A 14 314 140 HOH HOH . D 3 HOH A 15 315 15 HOH HOH . D 3 HOH A 16 316 142 HOH HOH . D 3 HOH A 17 317 16 HOH HOH . D 3 HOH A 18 318 18 HOH HOH . D 3 HOH A 19 319 21 HOH HOH . D 3 HOH A 20 320 146 HOH HOH . D 3 HOH A 21 321 147 HOH HOH . D 3 HOH A 22 322 22 HOH HOH . D 3 HOH A 23 323 149 HOH HOH . D 3 HOH A 24 324 150 HOH HOH . D 3 HOH A 25 325 24 HOH HOH . D 3 HOH A 26 326 26 HOH HOH . D 3 HOH A 27 327 153 HOH HOH . D 3 HOH A 28 328 32 HOH HOH . D 3 HOH A 29 329 155 HOH HOH . D 3 HOH A 30 330 33 HOH HOH . D 3 HOH A 31 331 39 HOH HOH . D 3 HOH A 32 332 42 HOH HOH . D 3 HOH A 33 333 159 HOH HOH . D 3 HOH A 34 334 160 HOH HOH . D 3 HOH A 35 335 161 HOH HOH . D 3 HOH A 36 336 162 HOH HOH . D 3 HOH A 37 337 163 HOH HOH . D 3 HOH A 38 338 164 HOH HOH . D 3 HOH A 39 339 43 HOH HOH . D 3 HOH A 40 340 45 HOH HOH . D 3 HOH A 41 341 167 HOH HOH . D 3 HOH A 42 342 168 HOH HOH . D 3 HOH A 43 343 46 HOH HOH . D 3 HOH A 44 344 170 HOH HOH . D 3 HOH A 45 345 48 HOH HOH . D 3 HOH A 46 346 172 HOH HOH . D 3 HOH A 47 347 50 HOH HOH . D 3 HOH A 48 348 53 HOH HOH . D 3 HOH A 49 349 57 HOH HOH . D 3 HOH A 50 350 58 HOH HOH . D 3 HOH A 51 351 59 HOH HOH . D 3 HOH A 52 352 61 HOH HOH . D 3 HOH A 53 353 70 HOH HOH . D 3 HOH A 54 354 73 HOH HOH . D 3 HOH A 55 355 74 HOH HOH . D 3 HOH A 56 356 75 HOH HOH . D 3 HOH A 57 357 76 HOH HOH . D 3 HOH A 58 358 79 HOH HOH . D 3 HOH A 59 359 82 HOH HOH . D 3 HOH A 60 360 84 HOH HOH . D 3 HOH A 61 361 88 HOH HOH . D 3 HOH A 62 362 92 HOH HOH . D 3 HOH A 63 363 94 HOH HOH . D 3 HOH A 64 364 95 HOH HOH . D 3 HOH A 65 365 96 HOH HOH . D 3 HOH A 66 366 97 HOH HOH . D 3 HOH A 67 367 105 HOH HOH . D 3 HOH A 68 368 106 HOH HOH . D 3 HOH A 69 369 109 HOH HOH . D 3 HOH A 70 370 111 HOH HOH . D 3 HOH A 71 371 112 HOH HOH . D 3 HOH A 72 372 116 HOH HOH . D 3 HOH A 73 373 117 HOH HOH . D 3 HOH A 74 374 118 HOH HOH . D 3 HOH A 75 375 120 HOH HOH . D 3 HOH A 76 376 122 HOH HOH . D 3 HOH A 77 377 123 HOH HOH . D 3 HOH A 78 378 125 HOH HOH . D 3 HOH A 79 379 130 HOH HOH . E 3 HOH B 1 301 56 HOH HOH . E 3 HOH B 2 302 63 HOH HOH . E 3 HOH B 3 303 65 HOH HOH . E 3 HOH B 4 304 66 HOH HOH . E 3 HOH B 5 305 128 HOH HOH . E 3 HOH B 6 306 134 HOH HOH . E 3 HOH B 7 307 135 HOH HOH . E 3 HOH B 8 308 2 HOH HOH . E 3 HOH B 9 309 3 HOH HOH . E 3 HOH B 10 310 138 HOH HOH . E 3 HOH B 11 311 4 HOH HOH . E 3 HOH B 12 312 5 HOH HOH . E 3 HOH B 13 313 141 HOH HOH . E 3 HOH B 14 314 6 HOH HOH . E 3 HOH B 15 315 143 HOH HOH . E 3 HOH B 16 316 144 HOH HOH . E 3 HOH B 17 317 145 HOH HOH . E 3 HOH B 18 318 7 HOH HOH . E 3 HOH B 19 319 9 HOH HOH . E 3 HOH B 20 320 148 HOH HOH . E 3 HOH B 21 321 10 HOH HOH . E 3 HOH B 22 322 12 HOH HOH . E 3 HOH B 23 323 151 HOH HOH . E 3 HOH B 24 324 152 HOH HOH . E 3 HOH B 25 325 13 HOH HOH . E 3 HOH B 26 326 154 HOH HOH . E 3 HOH B 27 327 17 HOH HOH . E 3 HOH B 28 328 156 HOH HOH . E 3 HOH B 29 329 157 HOH HOH . E 3 HOH B 30 330 158 HOH HOH . E 3 HOH B 31 331 19 HOH HOH . E 3 HOH B 32 332 20 HOH HOH . E 3 HOH B 33 333 23 HOH HOH . E 3 HOH B 34 334 25 HOH HOH . E 3 HOH B 35 335 27 HOH HOH . E 3 HOH B 36 336 28 HOH HOH . E 3 HOH B 37 337 165 HOH HOH . E 3 HOH B 38 338 166 HOH HOH . E 3 HOH B 39 339 29 HOH HOH . E 3 HOH B 40 340 30 HOH HOH . E 3 HOH B 41 341 169 HOH HOH . E 3 HOH B 42 342 31 HOH HOH . E 3 HOH B 43 343 171 HOH HOH . E 3 HOH B 44 344 34 HOH HOH . E 3 HOH B 45 345 173 HOH HOH . E 3 HOH B 46 346 174 HOH HOH . E 3 HOH B 47 347 35 HOH HOH . E 3 HOH B 48 348 36 HOH HOH . E 3 HOH B 49 349 37 HOH HOH . E 3 HOH B 50 350 38 HOH HOH . E 3 HOH B 51 351 40 HOH HOH . E 3 HOH B 52 352 41 HOH HOH . E 3 HOH B 53 353 44 HOH HOH . E 3 HOH B 54 354 47 HOH HOH . E 3 HOH B 55 355 49 HOH HOH . E 3 HOH B 56 356 51 HOH HOH . E 3 HOH B 57 357 52 HOH HOH . E 3 HOH B 58 358 60 HOH HOH . E 3 HOH B 59 359 67 HOH HOH . E 3 HOH B 60 360 68 HOH HOH . E 3 HOH B 61 361 69 HOH HOH . E 3 HOH B 62 362 71 HOH HOH . E 3 HOH B 63 363 72 HOH HOH . E 3 HOH B 64 364 77 HOH HOH . E 3 HOH B 65 365 78 HOH HOH . E 3 HOH B 66 366 80 HOH HOH . E 3 HOH B 67 367 81 HOH HOH . E 3 HOH B 68 368 83 HOH HOH . E 3 HOH B 69 369 85 HOH HOH . E 3 HOH B 70 370 86 HOH HOH . E 3 HOH B 71 371 87 HOH HOH . E 3 HOH B 72 372 90 HOH HOH . E 3 HOH B 73 373 91 HOH HOH . E 3 HOH B 74 374 93 HOH HOH . E 3 HOH B 75 375 98 HOH HOH . E 3 HOH B 76 376 99 HOH HOH . E 3 HOH B 77 377 100 HOH HOH . E 3 HOH B 78 378 101 HOH HOH . E 3 HOH B 79 379 102 HOH HOH . E 3 HOH B 80 380 103 HOH HOH . E 3 HOH B 81 381 104 HOH HOH . E 3 HOH B 82 382 107 HOH HOH . E 3 HOH B 83 383 108 HOH HOH . E 3 HOH B 84 384 110 HOH HOH . E 3 HOH B 85 385 113 HOH HOH . E 3 HOH B 86 386 114 HOH HOH . E 3 HOH B 87 387 115 HOH HOH . E 3 HOH B 88 388 119 HOH HOH . E 3 HOH B 89 389 121 HOH HOH . E 3 HOH B 90 390 126 HOH HOH . E 3 HOH B 91 391 127 HOH HOH . E 3 HOH B 92 392 129 HOH HOH . E 3 HOH B 93 393 131 HOH HOH . E 3 HOH B 94 394 132 HOH HOH . E 3 HOH B 95 395 133 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol LI _atom_site.label_atom_id LI _atom_site.label_comp_id LI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -32.831 _atom_site.Cartn_y 39.557 _atom_site.Cartn_z 63.918 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 21.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id LI _atom_site.auth_comp_id LI _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #