data_3HZG # _model_server_result.job_id n1fPMmQrymWx1RQaDXVsFA _model_server_result.datetime_utc '2024-11-27 04:19:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hzg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":260}' # _entry.id 3HZG # _exptl.entry_id 3HZG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HZG _cell.length_a 78.553 _cell.length_b 86.594 _cell.length_c 162.487 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HZG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 A,D,E,F,G,H,R,S,T,U,X 2 1 A,C,E,F,G,H,M,N,O,P,Q,U,W 3 1 B,C,I,J,K,L,M,N,O,P,Q,V,W 4 1 B,D,I,J,K,L,R,S,T,V,X 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 P N N ? 4 Q N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 3HZG _atom_sites.fract_transf_matrix[1][1] 0.01273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 1001 1001 PO4 PO4 . F 2 PO4 A 1 1002 1002 PO4 PO4 . G 3 FAD A 1 501 501 FAD FAD . H 4 GOL A 1 259 2 GOL GOL . I 2 PO4 B 1 1005 1005 PO4 PO4 . J 2 PO4 B 1 1007 1007 PO4 PO4 . K 2 PO4 B 1 1009 1009 PO4 PO4 . L 3 FAD B 1 501 501 FAD FAD . M 2 PO4 C 1 1004 1004 PO4 PO4 . N 2 PO4 C 1 1006 1006 PO4 PO4 . O 3 FAD C 1 501 501 FAD FAD . P 4 GOL C 1 259 1 GOL GOL . Q 4 GOL C 1 260 3 GOL GOL . R 2 PO4 D 1 1003 1003 PO4 PO4 . S 2 PO4 D 1 1008 1008 PO4 PO4 . T 3 FAD D 1 501 501 FAD FAD . U 5 HOH A 1 260 1 HOH HOH . U 5 HOH A 2 261 7 HOH HOH . U 5 HOH A 3 262 8 HOH HOH . U 5 HOH A 4 263 11 HOH HOH . U 5 HOH A 5 264 13 HOH HOH . U 5 HOH A 6 265 14 HOH HOH . U 5 HOH A 7 266 27 HOH HOH . U 5 HOH A 8 267 30 HOH HOH . U 5 HOH A 9 268 39 HOH HOH . U 5 HOH A 10 269 40 HOH HOH . U 5 HOH A 11 270 45 HOH HOH . U 5 HOH A 12 271 46 HOH HOH . U 5 HOH A 13 272 47 HOH HOH . U 5 HOH A 14 273 61 HOH HOH . U 5 HOH A 15 274 62 HOH HOH . U 5 HOH A 16 275 64 HOH HOH . U 5 HOH A 17 276 65 HOH HOH . U 5 HOH A 18 277 67 HOH HOH . U 5 HOH A 19 278 71 HOH HOH . U 5 HOH A 20 279 76 HOH HOH . U 5 HOH A 21 280 79 HOH HOH . U 5 HOH A 22 281 83 HOH HOH . U 5 HOH A 23 282 91 HOH HOH . U 5 HOH A 24 283 94 HOH HOH . U 5 HOH A 25 284 98 HOH HOH . U 5 HOH A 26 285 109 HOH HOH . U 5 HOH A 27 286 113 HOH HOH . U 5 HOH A 28 287 120 HOH HOH . U 5 HOH A 29 288 122 HOH HOH . U 5 HOH A 30 289 123 HOH HOH . U 5 HOH A 31 290 131 HOH HOH . U 5 HOH A 32 291 133 HOH HOH . U 5 HOH A 33 292 148 HOH HOH . U 5 HOH A 34 293 150 HOH HOH . U 5 HOH A 35 294 152 HOH HOH . U 5 HOH A 36 295 155 HOH HOH . U 5 HOH A 37 296 157 HOH HOH . U 5 HOH A 38 297 158 HOH HOH . U 5 HOH A 39 298 161 HOH HOH . U 5 HOH A 40 299 163 HOH HOH . U 5 HOH A 41 300 168 HOH HOH . U 5 HOH A 42 301 174 HOH HOH . U 5 HOH A 43 302 180 HOH HOH . U 5 HOH A 44 303 182 HOH HOH . U 5 HOH A 45 304 188 HOH HOH . U 5 HOH A 46 305 194 HOH HOH . U 5 HOH A 47 306 195 HOH HOH . U 5 HOH A 48 307 199 HOH HOH . U 5 HOH A 49 308 200 HOH HOH . U 5 HOH A 50 309 204 HOH HOH . U 5 HOH A 51 310 207 HOH HOH . U 5 HOH A 52 311 210 HOH HOH . U 5 HOH A 53 312 212 HOH HOH . U 5 HOH A 54 313 214 HOH HOH . U 5 HOH A 55 314 154 HOH HOH . U 5 HOH A 56 315 221 HOH HOH . U 5 HOH A 57 316 223 HOH HOH . U 5 HOH A 58 317 224 HOH HOH . U 5 HOH A 59 318 227 HOH HOH . U 5 HOH A 60 319 229 HOH HOH . U 5 HOH A 61 320 235 HOH HOH . U 5 HOH A 62 321 237 HOH HOH . U 5 HOH A 63 322 242 HOH HOH . U 5 HOH A 64 323 248 HOH HOH . V 5 HOH B 1 259 3 HOH HOH . V 5 HOH B 2 260 4 HOH HOH . V 5 HOH B 3 261 10 HOH HOH . V 5 HOH B 4 262 17 HOH HOH . V 5 HOH B 5 263 18 HOH HOH . V 5 HOH B 6 264 19 HOH HOH . V 5 HOH B 7 265 20 HOH HOH . V 5 HOH B 8 266 21 HOH HOH . V 5 HOH B 9 267 25 HOH HOH . V 5 HOH B 10 268 28 HOH HOH . V 5 HOH B 11 269 38 HOH HOH . V 5 HOH B 12 270 43 HOH HOH . V 5 HOH B 13 271 50 HOH HOH . V 5 HOH B 14 272 52 HOH HOH . V 5 HOH B 15 273 55 HOH HOH . V 5 HOH B 16 274 59 HOH HOH . V 5 HOH B 17 275 66 HOH HOH . V 5 HOH B 18 276 72 HOH HOH . V 5 HOH B 19 277 75 HOH HOH . V 5 HOH B 20 278 78 HOH HOH . V 5 HOH B 21 279 88 HOH HOH . V 5 HOH B 22 280 92 HOH HOH . V 5 HOH B 23 281 93 HOH HOH . V 5 HOH B 24 282 96 HOH HOH . V 5 HOH B 25 283 99 HOH HOH . V 5 HOH B 26 284 101 HOH HOH . V 5 HOH B 27 285 104 HOH HOH . V 5 HOH B 28 286 105 HOH HOH . V 5 HOH B 29 287 108 HOH HOH . V 5 HOH B 30 288 112 HOH HOH . V 5 HOH B 31 289 116 HOH HOH . V 5 HOH B 32 290 117 HOH HOH . V 5 HOH B 33 291 118 HOH HOH . V 5 HOH B 34 292 119 HOH HOH . V 5 HOH B 35 293 124 HOH HOH . V 5 HOH B 36 294 126 HOH HOH . V 5 HOH B 37 295 127 HOH HOH . V 5 HOH B 38 296 134 HOH HOH . V 5 HOH B 39 297 139 HOH HOH . V 5 HOH B 40 298 140 HOH HOH . V 5 HOH B 41 299 143 HOH HOH . V 5 HOH B 42 300 145 HOH HOH . V 5 HOH B 43 301 156 HOH HOH . V 5 HOH B 44 302 160 HOH HOH . V 5 HOH B 45 303 171 HOH HOH . V 5 HOH B 46 304 173 HOH HOH . V 5 HOH B 47 305 179 HOH HOH . V 5 HOH B 48 306 191 HOH HOH . V 5 HOH B 49 307 193 HOH HOH . V 5 HOH B 50 308 197 HOH HOH . V 5 HOH B 51 309 198 HOH HOH . V 5 HOH B 52 310 202 HOH HOH . V 5 HOH B 53 311 208 HOH HOH . V 5 HOH B 54 312 225 HOH HOH . V 5 HOH B 55 313 236 HOH HOH . V 5 HOH B 56 314 219 HOH HOH . V 5 HOH B 57 315 250 HOH HOH . V 5 HOH B 58 316 249 HOH HOH . W 5 HOH C 1 261 2 HOH HOH . W 5 HOH C 2 262 6 HOH HOH . W 5 HOH C 3 263 9 HOH HOH . W 5 HOH C 4 264 12 HOH HOH . W 5 HOH C 5 265 15 HOH HOH . W 5 HOH C 6 266 22 HOH HOH . W 5 HOH C 7 267 24 HOH HOH . W 5 HOH C 8 268 26 HOH HOH . W 5 HOH C 9 269 31 HOH HOH . W 5 HOH C 10 270 33 HOH HOH . W 5 HOH C 11 271 34 HOH HOH . W 5 HOH C 12 272 35 HOH HOH . W 5 HOH C 13 273 36 HOH HOH . W 5 HOH C 14 274 41 HOH HOH . W 5 HOH C 15 275 42 HOH HOH . W 5 HOH C 16 276 48 HOH HOH . W 5 HOH C 17 277 49 HOH HOH . W 5 HOH C 18 278 54 HOH HOH . W 5 HOH C 19 279 56 HOH HOH . W 5 HOH C 20 280 60 HOH HOH . W 5 HOH C 21 281 68 HOH HOH . W 5 HOH C 22 282 74 HOH HOH . W 5 HOH C 23 283 77 HOH HOH . W 5 HOH C 24 284 80 HOH HOH . W 5 HOH C 25 285 81 HOH HOH . W 5 HOH C 26 286 82 HOH HOH . W 5 HOH C 27 287 84 HOH HOH . W 5 HOH C 28 288 85 HOH HOH . W 5 HOH C 29 289 86 HOH HOH . W 5 HOH C 30 290 90 HOH HOH . W 5 HOH C 31 291 102 HOH HOH . W 5 HOH C 32 292 106 HOH HOH . W 5 HOH C 33 293 110 HOH HOH . W 5 HOH C 34 294 111 HOH HOH . W 5 HOH C 35 295 115 HOH HOH . W 5 HOH C 36 296 121 HOH HOH . W 5 HOH C 37 297 125 HOH HOH . W 5 HOH C 38 298 129 HOH HOH . W 5 HOH C 39 299 135 HOH HOH . W 5 HOH C 40 300 136 HOH HOH . W 5 HOH C 41 301 137 HOH HOH . W 5 HOH C 42 302 141 HOH HOH . W 5 HOH C 43 303 142 HOH HOH . W 5 HOH C 44 304 144 HOH HOH . W 5 HOH C 45 305 149 HOH HOH . W 5 HOH C 46 306 153 HOH HOH . W 5 HOH C 47 307 159 HOH HOH . W 5 HOH C 48 308 162 HOH HOH . W 5 HOH C 49 309 164 HOH HOH . W 5 HOH C 50 310 165 HOH HOH . W 5 HOH C 51 311 167 HOH HOH . W 5 HOH C 52 312 169 HOH HOH . W 5 HOH C 53 313 172 HOH HOH . W 5 HOH C 54 314 175 HOH HOH . W 5 HOH C 55 315 176 HOH HOH . W 5 HOH C 56 316 178 HOH HOH . W 5 HOH C 57 317 181 HOH HOH . W 5 HOH C 58 318 185 HOH HOH . W 5 HOH C 59 319 186 HOH HOH . W 5 HOH C 60 320 196 HOH HOH . W 5 HOH C 61 321 203 HOH HOH . W 5 HOH C 62 322 206 HOH HOH . W 5 HOH C 63 323 213 HOH HOH . W 5 HOH C 64 324 215 HOH HOH . W 5 HOH C 65 325 218 HOH HOH . W 5 HOH C 66 326 220 HOH HOH . W 5 HOH C 67 327 228 HOH HOH . W 5 HOH C 68 328 230 HOH HOH . W 5 HOH C 69 329 232 HOH HOH . W 5 HOH C 70 330 234 HOH HOH . W 5 HOH C 71 331 244 HOH HOH . W 5 HOH C 72 332 245 HOH HOH . W 5 HOH C 73 333 246 HOH HOH . W 5 HOH C 74 334 147 HOH HOH . W 5 HOH C 75 335 255 HOH HOH . W 5 HOH C 76 336 256 HOH HOH . X 5 HOH D 1 259 5 HOH HOH . X 5 HOH D 2 260 16 HOH HOH . X 5 HOH D 3 261 23 HOH HOH . X 5 HOH D 4 262 29 HOH HOH . X 5 HOH D 5 263 32 HOH HOH . X 5 HOH D 6 264 37 HOH HOH . X 5 HOH D 7 265 44 HOH HOH . X 5 HOH D 8 266 51 HOH HOH . X 5 HOH D 9 267 53 HOH HOH . X 5 HOH D 10 268 57 HOH HOH . X 5 HOH D 11 269 58 HOH HOH . X 5 HOH D 12 270 63 HOH HOH . X 5 HOH D 13 271 69 HOH HOH . X 5 HOH D 14 272 70 HOH HOH . X 5 HOH D 15 273 73 HOH HOH . X 5 HOH D 16 274 87 HOH HOH . X 5 HOH D 17 275 89 HOH HOH . X 5 HOH D 18 276 95 HOH HOH . X 5 HOH D 19 277 97 HOH HOH . X 5 HOH D 20 278 100 HOH HOH . X 5 HOH D 21 279 103 HOH HOH . X 5 HOH D 22 280 107 HOH HOH . X 5 HOH D 23 281 114 HOH HOH . X 5 HOH D 24 282 128 HOH HOH . X 5 HOH D 25 283 130 HOH HOH . X 5 HOH D 26 284 132 HOH HOH . X 5 HOH D 27 285 138 HOH HOH . X 5 HOH D 28 286 146 HOH HOH . X 5 HOH D 29 288 151 HOH HOH . X 5 HOH D 30 290 166 HOH HOH . X 5 HOH D 31 291 170 HOH HOH . X 5 HOH D 32 292 177 HOH HOH . X 5 HOH D 33 293 183 HOH HOH . X 5 HOH D 34 294 184 HOH HOH . X 5 HOH D 35 295 187 HOH HOH . X 5 HOH D 36 296 189 HOH HOH . X 5 HOH D 37 297 190 HOH HOH . X 5 HOH D 38 298 192 HOH HOH . X 5 HOH D 39 299 201 HOH HOH . X 5 HOH D 40 300 205 HOH HOH . X 5 HOH D 41 301 209 HOH HOH . X 5 HOH D 42 302 211 HOH HOH . X 5 HOH D 43 303 216 HOH HOH . X 5 HOH D 44 304 217 HOH HOH . X 5 HOH D 45 305 222 HOH HOH . X 5 HOH D 46 306 226 HOH HOH . X 5 HOH D 47 307 231 HOH HOH . X 5 HOH D 48 308 233 HOH HOH . X 5 HOH D 49 309 238 HOH HOH . X 5 HOH D 50 310 239 HOH HOH . X 5 HOH D 51 311 240 HOH HOH . X 5 HOH D 52 312 241 HOH HOH . X 5 HOH D 53 313 243 HOH HOH . X 5 HOH D 54 314 251 HOH HOH . X 5 HOH D 55 315 252 HOH HOH . X 5 HOH D 56 316 253 HOH HOH . X 5 HOH D 57 317 254 HOH HOH . X 5 HOH D 58 318 257 HOH HOH . X 5 HOH D 59 334 247 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Q 4 -4.96 0.691 -26.902 1 57.24 ? C1 GOL 260 C 1 HETATM 2 O O1 GOL . . . Q 4 -6.204 0.112 -26.583 1 57.86 ? O1 GOL 260 C 1 HETATM 3 C C2 GOL . . . Q 4 -4.444 1.345 -25.635 1 57.3 ? C2 GOL 260 C 1 HETATM 4 O O2 GOL . . . Q 4 -3.304 2.118 -25.903 1 55.48 ? O2 GOL 260 C 1 HETATM 5 C C3 GOL . . . Q 4 -4.156 0.286 -24.578 1 58.21 ? C3 GOL 260 C 1 HETATM 6 O O3 GOL . . . Q 4 -5.337 -0.032 -23.87 1 58.96 ? O3 GOL 260 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #