data_3HZK # _model_server_result.job_id JZ0ZEe5byL2on6IJybvFTw _model_server_result.datetime_utc '2024-11-16 05:35:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":216}' # _entry.id 3HZK # _exptl.entry_id 3HZK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HZK _cell.length_a 46.34 _cell.length_b 80.94 _cell.length_c 128.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 KDO _pdbx_entity_branch_link.comp_id_2 KDA _pdbx_entity_branch_link.atom_id_1 C2 _pdbx_entity_branch_link.leaving_atom_id_1 O2 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C KDA 1 C 1 KDA C 302 KDA 3 n C KDO 2 C 2 KDO C 303 KDO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 94 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 139 A CYS 133 1_555 A SG CYS 199 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 98 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 B SG CYS 153 B CYS 139 1_555 B SG CYS 208 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 C O4 KDA . C KDA 1 1_555 C C2 KDO . C KDO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? metalc ? metalc1 A OD1 ASN 143 A ASN 137 1_555 D MG MG . A MG 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc2 B OE2 GLU 61 B GLU 58 1_555 F ZN ZN . B ZN 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HZK _atom_sites.fract_transf_matrix[1][1] 0.02158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 216 216 MG MG . E 4 MG A 1 217 217 MG MG . F 5 ZN B 1 215 215 ZN ZN . G 6 HOH A 1 214 2 HOH HOH . G 6 HOH A 2 215 3 HOH HOH . G 6 HOH A 3 218 6 HOH HOH . G 6 HOH A 4 219 7 HOH HOH . G 6 HOH A 5 220 10 HOH HOH . G 6 HOH A 6 221 11 HOH HOH . G 6 HOH A 7 222 12 HOH HOH . G 6 HOH A 8 223 15 HOH HOH . G 6 HOH A 9 224 17 HOH HOH . G 6 HOH A 10 225 19 HOH HOH . G 6 HOH A 11 226 21 HOH HOH . G 6 HOH A 12 227 24 HOH HOH . G 6 HOH A 13 228 33 HOH HOH . G 6 HOH A 14 229 34 HOH HOH . G 6 HOH A 15 230 43 HOH HOH . G 6 HOH A 16 231 44 HOH HOH . G 6 HOH A 17 232 45 HOH HOH . G 6 HOH A 18 233 48 HOH HOH . G 6 HOH A 19 234 59 HOH HOH . G 6 HOH A 20 235 61 HOH HOH . G 6 HOH A 21 236 62 HOH HOH . G 6 HOH A 22 237 63 HOH HOH . G 6 HOH A 23 238 64 HOH HOH . G 6 HOH A 24 239 65 HOH HOH . G 6 HOH A 25 240 66 HOH HOH . G 6 HOH A 26 241 67 HOH HOH . G 6 HOH A 27 242 69 HOH HOH . G 6 HOH A 28 243 70 HOH HOH . G 6 HOH A 29 244 71 HOH HOH . G 6 HOH A 30 245 73 HOH HOH . G 6 HOH A 31 246 74 HOH HOH . G 6 HOH A 32 247 75 HOH HOH . G 6 HOH A 33 248 79 HOH HOH . G 6 HOH A 34 249 81 HOH HOH . G 6 HOH A 35 250 82 HOH HOH . G 6 HOH A 36 251 85 HOH HOH . G 6 HOH A 37 252 91 HOH HOH . G 6 HOH A 38 253 93 HOH HOH . G 6 HOH A 39 254 95 HOH HOH . G 6 HOH A 40 255 99 HOH HOH . G 6 HOH A 41 256 100 HOH HOH . G 6 HOH A 42 257 107 HOH HOH . G 6 HOH A 43 258 108 HOH HOH . G 6 HOH A 44 259 109 HOH HOH . G 6 HOH A 45 260 111 HOH HOH . G 6 HOH A 46 261 115 HOH HOH . G 6 HOH A 47 262 116 HOH HOH . G 6 HOH A 48 263 117 HOH HOH . G 6 HOH A 49 264 118 HOH HOH . G 6 HOH A 50 265 121 HOH HOH . G 6 HOH A 51 266 122 HOH HOH . G 6 HOH A 52 267 123 HOH HOH . G 6 HOH A 53 268 125 HOH HOH . G 6 HOH A 54 269 127 HOH HOH . G 6 HOH A 55 270 128 HOH HOH . G 6 HOH A 56 271 130 HOH HOH . G 6 HOH A 57 272 132 HOH HOH . G 6 HOH A 58 273 138 HOH HOH . G 6 HOH A 59 274 139 HOH HOH . G 6 HOH A 60 275 140 HOH HOH . G 6 HOH A 61 276 141 HOH HOH . G 6 HOH A 62 277 146 HOH HOH . G 6 HOH A 63 278 148 HOH HOH . G 6 HOH A 64 279 149 HOH HOH . G 6 HOH A 65 280 150 HOH HOH . G 6 HOH A 66 281 152 HOH HOH . G 6 HOH A 67 282 153 HOH HOH . G 6 HOH A 68 283 154 HOH HOH . G 6 HOH A 69 284 155 HOH HOH . G 6 HOH A 70 285 157 HOH HOH . G 6 HOH A 71 286 160 HOH HOH . G 6 HOH A 72 287 163 HOH HOH . G 6 HOH A 73 288 165 HOH HOH . G 6 HOH A 74 289 166 HOH HOH . G 6 HOH A 75 290 1 HOH HOH . H 6 HOH B 1 129 129 HOH HOH . H 6 HOH B 2 131 131 HOH HOH . H 6 HOH B 3 214 4 HOH HOH . H 6 HOH B 4 216 5 HOH HOH . H 6 HOH B 5 217 8 HOH HOH . H 6 HOH B 6 218 9 HOH HOH . H 6 HOH B 7 219 13 HOH HOH . H 6 HOH B 8 220 14 HOH HOH . H 6 HOH B 9 221 16 HOH HOH . H 6 HOH B 10 222 18 HOH HOH . H 6 HOH B 11 223 20 HOH HOH . H 6 HOH B 12 224 22 HOH HOH . H 6 HOH B 13 225 23 HOH HOH . H 6 HOH B 14 226 25 HOH HOH . H 6 HOH B 15 227 26 HOH HOH . H 6 HOH B 16 228 27 HOH HOH . H 6 HOH B 17 229 28 HOH HOH . H 6 HOH B 18 230 29 HOH HOH . H 6 HOH B 19 231 30 HOH HOH . H 6 HOH B 20 232 31 HOH HOH . H 6 HOH B 21 233 32 HOH HOH . H 6 HOH B 22 234 35 HOH HOH . H 6 HOH B 23 235 36 HOH HOH . H 6 HOH B 24 236 37 HOH HOH . H 6 HOH B 25 237 38 HOH HOH . H 6 HOH B 26 238 39 HOH HOH . H 6 HOH B 27 239 40 HOH HOH . H 6 HOH B 28 240 41 HOH HOH . H 6 HOH B 29 241 42 HOH HOH . H 6 HOH B 30 242 46 HOH HOH . H 6 HOH B 31 243 47 HOH HOH . H 6 HOH B 32 244 49 HOH HOH . H 6 HOH B 33 245 50 HOH HOH . H 6 HOH B 34 246 51 HOH HOH . H 6 HOH B 35 247 52 HOH HOH . H 6 HOH B 36 248 53 HOH HOH . H 6 HOH B 37 249 54 HOH HOH . H 6 HOH B 38 250 55 HOH HOH . H 6 HOH B 39 251 56 HOH HOH . H 6 HOH B 40 252 57 HOH HOH . H 6 HOH B 41 253 58 HOH HOH . H 6 HOH B 42 254 60 HOH HOH . H 6 HOH B 43 255 68 HOH HOH . H 6 HOH B 44 256 72 HOH HOH . H 6 HOH B 45 257 76 HOH HOH . H 6 HOH B 46 258 77 HOH HOH . H 6 HOH B 47 259 78 HOH HOH . H 6 HOH B 48 260 80 HOH HOH . H 6 HOH B 49 261 83 HOH HOH . H 6 HOH B 50 262 84 HOH HOH . H 6 HOH B 51 263 86 HOH HOH . H 6 HOH B 52 264 87 HOH HOH . H 6 HOH B 53 265 88 HOH HOH . H 6 HOH B 54 266 89 HOH HOH . H 6 HOH B 55 267 90 HOH HOH . H 6 HOH B 56 268 92 HOH HOH . H 6 HOH B 57 269 94 HOH HOH . H 6 HOH B 58 270 96 HOH HOH . H 6 HOH B 59 271 97 HOH HOH . H 6 HOH B 60 272 98 HOH HOH . H 6 HOH B 61 273 101 HOH HOH . H 6 HOH B 62 274 102 HOH HOH . H 6 HOH B 63 275 103 HOH HOH . H 6 HOH B 64 276 104 HOH HOH . H 6 HOH B 65 277 105 HOH HOH . H 6 HOH B 66 278 106 HOH HOH . H 6 HOH B 67 279 110 HOH HOH . H 6 HOH B 68 280 112 HOH HOH . H 6 HOH B 69 281 113 HOH HOH . H 6 HOH B 70 282 114 HOH HOH . H 6 HOH B 71 283 119 HOH HOH . H 6 HOH B 72 284 120 HOH HOH . H 6 HOH B 73 285 124 HOH HOH . H 6 HOH B 74 286 126 HOH HOH . H 6 HOH B 75 287 133 HOH HOH . H 6 HOH B 76 288 134 HOH HOH . H 6 HOH B 77 289 135 HOH HOH . H 6 HOH B 78 290 136 HOH HOH . H 6 HOH B 79 291 137 HOH HOH . H 6 HOH B 80 292 142 HOH HOH . H 6 HOH B 81 293 143 HOH HOH . H 6 HOH B 82 294 144 HOH HOH . H 6 HOH B 83 295 145 HOH HOH . H 6 HOH B 84 296 147 HOH HOH . H 6 HOH B 85 297 151 HOH HOH . H 6 HOH B 86 298 156 HOH HOH . H 6 HOH B 87 299 158 HOH HOH . H 6 HOH B 88 300 159 HOH HOH . H 6 HOH B 89 301 161 HOH HOH . H 6 HOH B 90 304 162 HOH HOH . H 6 HOH B 91 305 164 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -14.617 _atom_site.Cartn_y 1.586 _atom_site.Cartn_z 36.803 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 216 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #