data_3HZO # _model_server_result.job_id NbiMMfI8nroUKbnIDOQOjw _model_server_result.datetime_utc '2024-10-19 19:44:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":5188}' # _entry.id 3HZO # _exptl.entry_id 3HZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HZO _cell.length_a 100.779 _cell.length_b 100.779 _cell.length_c 135.112 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 254 A ALA 223 1_555 E NA NA . A NA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc2 A O LEU 257 A LEU 226 1_555 E NA NA . A NA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc3 A O GLY 260 A GLY 229 1_555 E NA NA . A NA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc4 E NA NA . A NA 265 1_555 G O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc5 E NA NA . A NA 265 1_555 G O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 246 n n C1 O1B MLA doub 247 n n C1 C2 MLA sing 248 n n O1A H1A MLA sing 249 n n C2 C3 MLA sing 250 n n C2 HC21 MLA sing 251 n n C2 HC22 MLA sing 252 n n C3 O3A MLA doub 253 n n C3 O3B MLA sing 254 n n O3B H3B MLA sing 255 n n # _atom_sites.entry_id 3HZO _atom_sites.fract_transf_matrix[1][1] 0.009923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 263 263 EDO EDO . D 2 EDO A 1 264 264 EDO EDO . E 3 NA A 1 265 265 NA NA . F 4 MLA B 1 5188 5188 MLA MLA . G 5 HOH A 1 266 266 HOH HOH . G 5 HOH A 2 267 267 HOH HOH . G 5 HOH A 3 268 268 HOH HOH . G 5 HOH A 4 269 269 HOH HOH . G 5 HOH A 5 270 270 HOH HOH . G 5 HOH A 6 271 271 HOH HOH . G 5 HOH A 7 272 272 HOH HOH . G 5 HOH A 8 273 273 HOH HOH . G 5 HOH A 9 274 274 HOH HOH . G 5 HOH A 10 275 275 HOH HOH . G 5 HOH A 11 276 276 HOH HOH . G 5 HOH A 12 277 277 HOH HOH . G 5 HOH A 13 278 278 HOH HOH . G 5 HOH A 14 279 279 HOH HOH . G 5 HOH A 15 280 280 HOH HOH . G 5 HOH A 16 281 281 HOH HOH . G 5 HOH A 17 282 282 HOH HOH . G 5 HOH A 18 283 283 HOH HOH . G 5 HOH A 19 284 284 HOH HOH . G 5 HOH A 20 285 285 HOH HOH . G 5 HOH A 21 286 286 HOH HOH . G 5 HOH A 22 287 287 HOH HOH . G 5 HOH A 23 288 288 HOH HOH . G 5 HOH A 24 289 289 HOH HOH . G 5 HOH A 25 290 290 HOH HOH . G 5 HOH A 26 291 291 HOH HOH . G 5 HOH A 27 292 292 HOH HOH . G 5 HOH A 28 293 293 HOH HOH . G 5 HOH A 29 294 294 HOH HOH . G 5 HOH A 30 295 295 HOH HOH . G 5 HOH A 31 296 296 HOH HOH . G 5 HOH A 32 297 297 HOH HOH . G 5 HOH A 33 298 298 HOH HOH . G 5 HOH A 34 299 299 HOH HOH . G 5 HOH A 35 300 300 HOH HOH . G 5 HOH A 36 301 301 HOH HOH . G 5 HOH A 37 302 302 HOH HOH . G 5 HOH A 38 303 303 HOH HOH . G 5 HOH A 39 304 304 HOH HOH . G 5 HOH A 40 305 305 HOH HOH . G 5 HOH A 41 306 306 HOH HOH . G 5 HOH A 42 307 307 HOH HOH . G 5 HOH A 43 308 308 HOH HOH . G 5 HOH A 44 309 309 HOH HOH . G 5 HOH A 45 310 310 HOH HOH . G 5 HOH A 46 311 311 HOH HOH . G 5 HOH A 47 312 312 HOH HOH . G 5 HOH A 48 313 313 HOH HOH . G 5 HOH A 49 314 314 HOH HOH . G 5 HOH A 50 315 315 HOH HOH . G 5 HOH A 51 316 316 HOH HOH . G 5 HOH A 52 317 317 HOH HOH . G 5 HOH A 53 319 319 HOH HOH . G 5 HOH A 54 320 320 HOH HOH . G 5 HOH A 55 321 321 HOH HOH . G 5 HOH A 56 322 322 HOH HOH . G 5 HOH A 57 323 323 HOH HOH . G 5 HOH A 58 324 324 HOH HOH . G 5 HOH A 59 325 325 HOH HOH . G 5 HOH A 60 326 326 HOH HOH . G 5 HOH A 61 327 327 HOH HOH . G 5 HOH A 62 328 328 HOH HOH . G 5 HOH A 63 329 329 HOH HOH . G 5 HOH A 64 330 330 HOH HOH . G 5 HOH A 65 331 331 HOH HOH . G 5 HOH A 66 332 332 HOH HOH . G 5 HOH A 67 333 333 HOH HOH . G 5 HOH A 68 334 334 HOH HOH . G 5 HOH A 69 335 335 HOH HOH . G 5 HOH A 70 336 336 HOH HOH . G 5 HOH A 71 337 337 HOH HOH . G 5 HOH A 72 338 338 HOH HOH . G 5 HOH A 73 339 339 HOH HOH . G 5 HOH A 74 340 340 HOH HOH . G 5 HOH A 75 341 341 HOH HOH . G 5 HOH A 76 342 342 HOH HOH . G 5 HOH A 77 343 343 HOH HOH . G 5 HOH A 78 344 344 HOH HOH . G 5 HOH A 79 345 345 HOH HOH . G 5 HOH A 80 347 347 HOH HOH . G 5 HOH A 81 348 348 HOH HOH . G 5 HOH A 82 349 349 HOH HOH . G 5 HOH A 83 351 351 HOH HOH . G 5 HOH A 84 352 352 HOH HOH . G 5 HOH A 85 353 353 HOH HOH . G 5 HOH A 86 354 354 HOH HOH . G 5 HOH A 87 355 355 HOH HOH . G 5 HOH A 88 356 356 HOH HOH . G 5 HOH A 89 357 357 HOH HOH . G 5 HOH A 90 358 358 HOH HOH . G 5 HOH A 91 359 359 HOH HOH . G 5 HOH A 92 360 360 HOH HOH . G 5 HOH A 93 361 361 HOH HOH . G 5 HOH A 94 362 362 HOH HOH . G 5 HOH A 95 363 363 HOH HOH . G 5 HOH A 96 364 364 HOH HOH . G 5 HOH A 97 365 365 HOH HOH . G 5 HOH A 98 366 366 HOH HOH . G 5 HOH A 99 367 367 HOH HOH . G 5 HOH A 100 368 368 HOH HOH . G 5 HOH A 101 369 369 HOH HOH . G 5 HOH A 102 370 370 HOH HOH . G 5 HOH A 103 371 371 HOH HOH . G 5 HOH A 104 372 372 HOH HOH . G 5 HOH A 105 373 373 HOH HOH . G 5 HOH A 106 375 375 HOH HOH . G 5 HOH A 107 376 376 HOH HOH . G 5 HOH A 108 377 377 HOH HOH . G 5 HOH A 109 378 378 HOH HOH . G 5 HOH A 110 379 379 HOH HOH . G 5 HOH A 111 380 380 HOH HOH . G 5 HOH A 112 381 381 HOH HOH . G 5 HOH A 113 382 382 HOH HOH . G 5 HOH A 114 383 383 HOH HOH . G 5 HOH A 115 384 384 HOH HOH . G 5 HOH A 116 385 385 HOH HOH . G 5 HOH A 117 386 386 HOH HOH . G 5 HOH A 118 387 387 HOH HOH . G 5 HOH A 119 388 388 HOH HOH . G 5 HOH A 120 389 389 HOH HOH . G 5 HOH A 121 390 390 HOH HOH . G 5 HOH A 122 391 391 HOH HOH . G 5 HOH A 123 392 392 HOH HOH . G 5 HOH A 124 393 393 HOH HOH . G 5 HOH A 125 394 394 HOH HOH . G 5 HOH A 126 395 395 HOH HOH . G 5 HOH A 127 396 396 HOH HOH . G 5 HOH A 128 397 397 HOH HOH . G 5 HOH A 129 398 398 HOH HOH . G 5 HOH A 130 399 399 HOH HOH . G 5 HOH A 131 400 400 HOH HOH . G 5 HOH A 132 401 401 HOH HOH . G 5 HOH A 133 402 402 HOH HOH . G 5 HOH A 134 403 403 HOH HOH . G 5 HOH A 135 404 404 HOH HOH . G 5 HOH A 136 405 405 HOH HOH . G 5 HOH A 137 406 406 HOH HOH . G 5 HOH A 138 407 407 HOH HOH . G 5 HOH A 139 408 408 HOH HOH . G 5 HOH A 140 409 409 HOH HOH . G 5 HOH A 141 410 410 HOH HOH . G 5 HOH A 142 411 411 HOH HOH . G 5 HOH A 143 412 412 HOH HOH . G 5 HOH A 144 413 413 HOH HOH . G 5 HOH A 145 414 414 HOH HOH . G 5 HOH A 146 415 415 HOH HOH . G 5 HOH A 147 417 417 HOH HOH . G 5 HOH A 148 418 418 HOH HOH . G 5 HOH A 149 419 419 HOH HOH . G 5 HOH A 150 420 420 HOH HOH . G 5 HOH A 151 421 421 HOH HOH . G 5 HOH A 152 422 422 HOH HOH . H 5 HOH B 1 263 263 HOH HOH . H 5 HOH B 2 264 264 HOH HOH . H 5 HOH B 3 265 265 HOH HOH . H 5 HOH B 4 266 266 HOH HOH . H 5 HOH B 5 267 267 HOH HOH . H 5 HOH B 6 268 268 HOH HOH . H 5 HOH B 7 269 269 HOH HOH . H 5 HOH B 8 270 270 HOH HOH . H 5 HOH B 9 271 271 HOH HOH . H 5 HOH B 10 272 272 HOH HOH . H 5 HOH B 11 273 273 HOH HOH . H 5 HOH B 12 274 274 HOH HOH . H 5 HOH B 13 275 275 HOH HOH . H 5 HOH B 14 276 276 HOH HOH . H 5 HOH B 15 277 277 HOH HOH . H 5 HOH B 16 278 278 HOH HOH . H 5 HOH B 17 279 279 HOH HOH . H 5 HOH B 18 280 280 HOH HOH . H 5 HOH B 19 281 281 HOH HOH . H 5 HOH B 20 282 282 HOH HOH . H 5 HOH B 21 283 283 HOH HOH . H 5 HOH B 22 284 284 HOH HOH . H 5 HOH B 23 285 285 HOH HOH . H 5 HOH B 24 287 287 HOH HOH . H 5 HOH B 25 288 288 HOH HOH . H 5 HOH B 26 289 289 HOH HOH . H 5 HOH B 27 290 290 HOH HOH . H 5 HOH B 28 291 291 HOH HOH . H 5 HOH B 29 293 293 HOH HOH . H 5 HOH B 30 294 294 HOH HOH . H 5 HOH B 31 295 295 HOH HOH . H 5 HOH B 32 296 296 HOH HOH . H 5 HOH B 33 297 297 HOH HOH . H 5 HOH B 34 298 298 HOH HOH . H 5 HOH B 35 299 299 HOH HOH . H 5 HOH B 36 300 300 HOH HOH . H 5 HOH B 37 301 301 HOH HOH . H 5 HOH B 38 302 302 HOH HOH . H 5 HOH B 39 303 303 HOH HOH . H 5 HOH B 40 304 304 HOH HOH . H 5 HOH B 41 305 305 HOH HOH . H 5 HOH B 42 306 306 HOH HOH . H 5 HOH B 43 307 307 HOH HOH . H 5 HOH B 44 308 308 HOH HOH . H 5 HOH B 45 309 309 HOH HOH . H 5 HOH B 46 310 310 HOH HOH . H 5 HOH B 47 311 311 HOH HOH . H 5 HOH B 48 312 312 HOH HOH . H 5 HOH B 49 313 313 HOH HOH . H 5 HOH B 50 314 314 HOH HOH . H 5 HOH B 51 315 315 HOH HOH . H 5 HOH B 52 316 316 HOH HOH . H 5 HOH B 53 317 317 HOH HOH . H 5 HOH B 54 318 318 HOH HOH . H 5 HOH B 55 319 319 HOH HOH . H 5 HOH B 56 320 320 HOH HOH . H 5 HOH B 57 321 321 HOH HOH . H 5 HOH B 58 322 318 HOH HOH . H 5 HOH B 59 323 323 HOH HOH . H 5 HOH B 60 324 324 HOH HOH . H 5 HOH B 61 325 325 HOH HOH . H 5 HOH B 62 326 326 HOH HOH . H 5 HOH B 63 327 327 HOH HOH . H 5 HOH B 64 328 328 HOH HOH . H 5 HOH B 65 329 329 HOH HOH . H 5 HOH B 66 330 330 HOH HOH . H 5 HOH B 67 331 331 HOH HOH . H 5 HOH B 68 332 332 HOH HOH . H 5 HOH B 69 333 333 HOH HOH . H 5 HOH B 70 334 334 HOH HOH . H 5 HOH B 71 335 346 HOH HOH . H 5 HOH B 72 336 336 HOH HOH . H 5 HOH B 73 337 337 HOH HOH . H 5 HOH B 74 338 338 HOH HOH . H 5 HOH B 75 339 339 HOH HOH . H 5 HOH B 76 340 340 HOH HOH . H 5 HOH B 77 341 341 HOH HOH . H 5 HOH B 78 342 342 HOH HOH . H 5 HOH B 79 343 343 HOH HOH . H 5 HOH B 80 344 344 HOH HOH . H 5 HOH B 81 345 345 HOH HOH . H 5 HOH B 82 346 346 HOH HOH . H 5 HOH B 83 347 347 HOH HOH . H 5 HOH B 84 348 348 HOH HOH . H 5 HOH B 85 349 349 HOH HOH . H 5 HOH B 86 350 350 HOH HOH . H 5 HOH B 87 351 351 HOH HOH . H 5 HOH B 88 352 352 HOH HOH . H 5 HOH B 89 353 353 HOH HOH . H 5 HOH B 90 354 354 HOH HOH . H 5 HOH B 91 355 350 HOH HOH . H 5 HOH B 92 356 356 HOH HOH . H 5 HOH B 93 357 357 HOH HOH . H 5 HOH B 94 358 358 HOH HOH . H 5 HOH B 95 359 359 HOH HOH . H 5 HOH B 96 360 360 HOH HOH . H 5 HOH B 97 362 362 HOH HOH . H 5 HOH B 98 363 363 HOH HOH . H 5 HOH B 99 364 364 HOH HOH . H 5 HOH B 100 365 365 HOH HOH . H 5 HOH B 101 366 366 HOH HOH . H 5 HOH B 102 369 369 HOH HOH . H 5 HOH B 103 370 370 HOH HOH . H 5 HOH B 104 371 371 HOH HOH . H 5 HOH B 105 372 372 HOH HOH . H 5 HOH B 106 374 374 HOH HOH . H 5 HOH B 107 375 375 HOH HOH . H 5 HOH B 108 416 416 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . F 4 -19.368 -15.202 -36.225 1 60.92 ? C1 MLA 5188 B 1 HETATM 2 O O1A MLA . . . F 4 -18.667 -15.25 -37.234 1 54.94 ? O1A MLA 5188 B 1 HETATM 3 O O1B MLA . . . F 4 -19.916 -14.056 -35.71 1 57.74 ? O1B MLA 5188 B 1 HETATM 4 C C2 MLA . . . F 4 -19.69 -16.48 -35.568 1 63.65 ? C2 MLA 5188 B 1 HETATM 5 C C3 MLA . . . F 4 -19.581 -16.7 -34.24 1 66.05 ? C3 MLA 5188 B 1 HETATM 6 O O3A MLA . . . F 4 -19.175 -15.865 -33.433 1 66.32 ? O3A MLA 5188 B 1 HETATM 7 O O3B MLA . . . F 4 -19.948 -17.899 -33.821 1 67.5 ? O3B MLA 5188 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #