data_3HZT # _model_server_result.job_id XO_l89mxyerrExqn7tCL1w _model_server_result.datetime_utc '2024-12-13 16:44:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hzt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":544}' # _entry.id 3HZT # _exptl.entry_id 3HZT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.95 _cell.angle_gamma 90 _cell.entry_id 3HZT _cell.length_a 71.051 _cell.length_b 43.761 _cell.length_c 84.821 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 324 A ASP 394 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc2 A OD1 ASN 326 A ASN 396 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc3 A OD2 ASP 328 A ASP 398 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 A O GLN 330 A GLN 400 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc5 A OH TYR 377 A TYR 447 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc6 L O HOH . A HOH 545 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc7 L O HOH . A HOH 546 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3HZT _atom_sites.fract_transf_matrix[1][1] 0.014074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 601 MG MG . C 3 GOL A 1 602 602 GOL GOL . D 3 GOL A 1 1 1 GOL GOL . E 3 GOL A 1 538 1 GOL GOL . F 3 GOL A 1 539 1 GOL GOL . G 4 J60 A 1 540 1 J60 J60 . H 3 GOL A 1 541 1 GOL GOL . I 3 GOL A 1 542 1 GOL GOL . J 3 GOL A 1 543 1 GOL GOL . K 3 GOL A 1 544 1 GOL GOL . L 5 HOH A 1 2 2 HOH HOH . L 5 HOH A 2 3 3 HOH HOH . L 5 HOH A 3 4 4 HOH HOH . L 5 HOH A 4 5 5 HOH HOH . L 5 HOH A 5 6 6 HOH HOH . L 5 HOH A 6 7 7 HOH HOH . L 5 HOH A 7 8 8 HOH HOH . L 5 HOH A 8 9 9 HOH HOH . L 5 HOH A 9 10 10 HOH HOH . L 5 HOH A 10 11 11 HOH HOH . L 5 HOH A 11 12 12 HOH HOH . L 5 HOH A 12 13 13 HOH HOH . L 5 HOH A 13 15 15 HOH HOH . L 5 HOH A 14 16 16 HOH HOH . L 5 HOH A 15 17 17 HOH HOH . L 5 HOH A 16 18 18 HOH HOH . L 5 HOH A 17 19 19 HOH HOH . L 5 HOH A 18 20 20 HOH HOH . L 5 HOH A 19 21 21 HOH HOH . L 5 HOH A 20 22 22 HOH HOH . L 5 HOH A 21 23 23 HOH HOH . L 5 HOH A 22 24 24 HOH HOH . L 5 HOH A 23 25 25 HOH HOH . L 5 HOH A 24 26 26 HOH HOH . L 5 HOH A 25 27 27 HOH HOH . L 5 HOH A 26 28 28 HOH HOH . L 5 HOH A 27 29 29 HOH HOH . L 5 HOH A 28 30 30 HOH HOH . L 5 HOH A 29 31 31 HOH HOH . L 5 HOH A 30 32 32 HOH HOH . L 5 HOH A 31 33 33 HOH HOH . L 5 HOH A 32 34 34 HOH HOH . L 5 HOH A 33 35 35 HOH HOH . L 5 HOH A 34 36 36 HOH HOH . L 5 HOH A 35 37 37 HOH HOH . L 5 HOH A 36 38 38 HOH HOH . L 5 HOH A 37 39 39 HOH HOH . L 5 HOH A 38 40 40 HOH HOH . L 5 HOH A 39 41 41 HOH HOH . L 5 HOH A 40 42 42 HOH HOH . L 5 HOH A 41 43 43 HOH HOH . L 5 HOH A 42 44 44 HOH HOH . L 5 HOH A 43 46 46 HOH HOH . L 5 HOH A 44 47 47 HOH HOH . L 5 HOH A 45 48 48 HOH HOH . L 5 HOH A 46 49 49 HOH HOH . L 5 HOH A 47 50 50 HOH HOH . L 5 HOH A 48 51 51 HOH HOH . L 5 HOH A 49 52 52 HOH HOH . L 5 HOH A 50 53 53 HOH HOH . L 5 HOH A 51 54 54 HOH HOH . L 5 HOH A 52 55 55 HOH HOH . L 5 HOH A 53 56 56 HOH HOH . L 5 HOH A 54 57 57 HOH HOH . L 5 HOH A 55 58 58 HOH HOH . L 5 HOH A 56 59 59 HOH HOH . L 5 HOH A 57 60 60 HOH HOH . L 5 HOH A 58 61 61 HOH HOH . L 5 HOH A 59 62 62 HOH HOH . L 5 HOH A 60 63 63 HOH HOH . L 5 HOH A 61 64 64 HOH HOH . L 5 HOH A 62 65 65 HOH HOH . L 5 HOH A 63 66 66 HOH HOH . L 5 HOH A 64 67 67 HOH HOH . L 5 HOH A 65 68 68 HOH HOH . L 5 HOH A 66 69 69 HOH HOH . L 5 HOH A 67 70 70 HOH HOH . L 5 HOH A 68 545 1 HOH HOH . L 5 HOH A 69 546 71 HOH HOH . L 5 HOH A 70 547 73 HOH HOH . L 5 HOH A 71 548 74 HOH HOH . L 5 HOH A 72 549 75 HOH HOH . L 5 HOH A 73 550 76 HOH HOH . L 5 HOH A 74 551 77 HOH HOH . L 5 HOH A 75 552 78 HOH HOH . L 5 HOH A 76 553 79 HOH HOH . L 5 HOH A 77 554 80 HOH HOH . L 5 HOH A 78 555 81 HOH HOH . L 5 HOH A 79 556 82 HOH HOH . L 5 HOH A 80 557 83 HOH HOH . L 5 HOH A 81 558 84 HOH HOH . L 5 HOH A 82 559 85 HOH HOH . L 5 HOH A 83 560 86 HOH HOH . L 5 HOH A 84 561 87 HOH HOH . L 5 HOH A 85 562 88 HOH HOH . L 5 HOH A 86 563 89 HOH HOH . L 5 HOH A 87 564 90 HOH HOH . L 5 HOH A 88 565 91 HOH HOH . L 5 HOH A 89 566 92 HOH HOH . L 5 HOH A 90 567 93 HOH HOH . L 5 HOH A 91 568 94 HOH HOH . L 5 HOH A 92 569 95 HOH HOH . L 5 HOH A 93 570 96 HOH HOH . L 5 HOH A 94 571 97 HOH HOH . L 5 HOH A 95 572 98 HOH HOH . L 5 HOH A 96 573 99 HOH HOH . L 5 HOH A 97 574 100 HOH HOH . L 5 HOH A 98 575 101 HOH HOH . L 5 HOH A 99 576 102 HOH HOH . L 5 HOH A 100 577 103 HOH HOH . L 5 HOH A 101 578 104 HOH HOH . L 5 HOH A 102 579 105 HOH HOH . L 5 HOH A 103 580 1 HOH HOH . L 5 HOH A 104 581 2 HOH HOH . L 5 HOH A 105 582 3 HOH HOH . L 5 HOH A 106 583 5 HOH HOH . L 5 HOH A 107 584 6 HOH HOH . L 5 HOH A 108 585 9 HOH HOH . L 5 HOH A 109 586 10 HOH HOH . L 5 HOH A 110 587 11 HOH HOH . L 5 HOH A 111 588 17 HOH HOH . L 5 HOH A 112 589 18 HOH HOH . L 5 HOH A 113 590 20 HOH HOH . L 5 HOH A 114 591 21 HOH HOH . L 5 HOH A 115 592 22 HOH HOH . L 5 HOH A 116 593 23 HOH HOH . L 5 HOH A 117 594 25 HOH HOH . L 5 HOH A 118 595 26 HOH HOH . L 5 HOH A 119 596 27 HOH HOH . L 5 HOH A 120 597 28 HOH HOH . L 5 HOH A 121 598 29 HOH HOH . L 5 HOH A 122 599 30 HOH HOH . L 5 HOH A 123 600 31 HOH HOH . L 5 HOH A 124 603 32 HOH HOH . L 5 HOH A 125 604 33 HOH HOH . L 5 HOH A 126 605 35 HOH HOH . L 5 HOH A 127 606 36 HOH HOH . L 5 HOH A 128 607 37 HOH HOH . L 5 HOH A 129 608 38 HOH HOH . L 5 HOH A 130 609 40 HOH HOH . L 5 HOH A 131 610 43 HOH HOH . L 5 HOH A 132 611 47 HOH HOH . L 5 HOH A 133 612 50 HOH HOH . L 5 HOH A 134 613 51 HOH HOH . L 5 HOH A 135 614 54 HOH HOH . L 5 HOH A 136 615 56 HOH HOH . L 5 HOH A 137 616 57 HOH HOH . L 5 HOH A 138 617 59 HOH HOH . L 5 HOH A 139 618 60 HOH HOH . L 5 HOH A 140 619 61 HOH HOH . L 5 HOH A 141 620 63 HOH HOH . L 5 HOH A 142 621 66 HOH HOH . L 5 HOH A 143 622 68 HOH HOH . L 5 HOH A 144 623 73 HOH HOH . L 5 HOH A 145 624 74 HOH HOH . L 5 HOH A 146 625 75 HOH HOH . L 5 HOH A 147 626 76 HOH HOH . L 5 HOH A 148 627 77 HOH HOH . L 5 HOH A 149 628 78 HOH HOH . L 5 HOH A 150 629 80 HOH HOH . L 5 HOH A 151 630 84 HOH HOH . L 5 HOH A 152 631 88 HOH HOH . L 5 HOH A 153 632 89 HOH HOH . L 5 HOH A 154 633 90 HOH HOH . L 5 HOH A 155 634 100 HOH HOH . L 5 HOH A 156 635 102 HOH HOH . L 5 HOH A 157 636 104 HOH HOH . L 5 HOH A 158 637 108 HOH HOH . L 5 HOH A 159 638 109 HOH HOH . L 5 HOH A 160 639 111 HOH HOH . L 5 HOH A 161 640 112 HOH HOH . L 5 HOH A 162 641 113 HOH HOH . L 5 HOH A 163 642 114 HOH HOH . L 5 HOH A 164 643 115 HOH HOH . L 5 HOH A 165 644 116 HOH HOH . L 5 HOH A 166 645 118 HOH HOH . L 5 HOH A 167 646 119 HOH HOH . L 5 HOH A 168 647 124 HOH HOH . L 5 HOH A 169 648 127 HOH HOH . L 5 HOH A 170 649 128 HOH HOH . L 5 HOH A 171 650 129 HOH HOH . L 5 HOH A 172 651 130 HOH HOH . L 5 HOH A 173 652 132 HOH HOH . L 5 HOH A 174 653 140 HOH HOH . L 5 HOH A 175 654 142 HOH HOH . L 5 HOH A 176 655 143 HOH HOH . L 5 HOH A 177 656 145 HOH HOH . L 5 HOH A 178 657 148 HOH HOH . L 5 HOH A 179 658 149 HOH HOH . L 5 HOH A 180 659 153 HOH HOH . L 5 HOH A 181 660 154 HOH HOH . L 5 HOH A 182 661 160 HOH HOH . L 5 HOH A 183 662 164 HOH HOH . L 5 HOH A 184 663 171 HOH HOH . L 5 HOH A 185 664 178 HOH HOH . L 5 HOH A 186 665 179 HOH HOH . L 5 HOH A 187 666 186 HOH HOH . L 5 HOH A 188 667 191 HOH HOH . L 5 HOH A 189 668 194 HOH HOH . L 5 HOH A 190 669 196 HOH HOH . L 5 HOH A 191 670 201 HOH HOH . L 5 HOH A 192 671 210 HOH HOH . L 5 HOH A 193 672 211 HOH HOH . L 5 HOH A 194 673 217 HOH HOH . L 5 HOH A 195 674 218 HOH HOH . L 5 HOH A 196 675 219 HOH HOH . L 5 HOH A 197 676 220 HOH HOH . L 5 HOH A 198 677 221 HOH HOH . L 5 HOH A 199 678 222 HOH HOH . L 5 HOH A 200 679 223 HOH HOH . L 5 HOH A 201 680 224 HOH HOH . L 5 HOH A 202 681 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 3 11.979 1.505 35.663 1 39.78 ? C1 GOL 544 A 1 HETATM 2 O O1 GOL . . . K 3 11.426 2.784 35.687 1 36.41 ? O1 GOL 544 A 1 HETATM 3 C C2 GOL . . . K 3 13.312 1.459 34.934 1 41.99 ? C2 GOL 544 A 1 HETATM 4 O O2 GOL . . . K 3 13.549 2.623 34.164 1 44.38 ? O2 GOL 544 A 1 HETATM 5 C C3 GOL . . . K 3 13.375 0.168 34.125 1 42.56 ? C3 GOL 544 A 1 HETATM 6 O O3 GOL . . . K 3 12.644 -0.839 34.804 1 40.88 ? O3 GOL 544 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #