data_3I0A # _model_server_result.job_id mREoMDQsr0PQatvqP9jDAg _model_server_result.datetime_utc '2024-10-18 04:21:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i0a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":182}' # _entry.id 3I0A # _exptl.entry_id 3I0A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.38 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2,3-dihydroxyphenyl)carbonyl]-O-[(2R)-2-{[(2,3-dihydroxyphenyl)carbonyl]amino}-3-hydroxypropanoyl]-L-serine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3I0A _cell.length_a 114.253 _cell.length_b 114.253 _cell.length_c 117.95 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I0A _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,O 1 1 B,H,I,P 2 1 C,J,K,L,M,N,Q 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 76 1_555 A SG CYS 195 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 96 B CYS 76 1_555 B SG CYS 195 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 96 C CYS 76 1_555 C SG CYS 195 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 E FE FE . A FE 180 1_555 F O6 3ET . A 3ET 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 E FE FE . A FE 180 1_555 F O3 3ET . A 3ET 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc3 E FE FE . A FE 180 1_555 G O6 2DS . A 2DS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc4 E FE FE . A FE 180 1_555 G O4 2DS . A 2DS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc5 E FE FE . A FE 180 1_555 G O1 2DS . A 2DS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 E FE FE . A FE 180 1_555 G O3 2DS . A 2DS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc7 H FE FE . B FE 179 1_555 I O3 DBH . B DBH 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc8 H FE FE . B FE 179 1_555 I O6 DBH . B DBH 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc9 K FE FE . C FE 180 1_555 N O48 MCJ . C MCJ 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc10 K FE FE . C FE 180 1_555 N O49 MCJ . C MCJ 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc11 K FE FE . C FE 180 1_555 N O3 MCJ . C MCJ 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc12 K FE FE . C FE 180 1_555 N O4 MCJ . C MCJ 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc13 K FE FE . C FE 180 1_555 N O6 MCJ . C MCJ 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc14 K FE FE . C FE 180 1_555 N O1 MCJ . C MCJ 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.689 ? # _chem_comp.formula 'C20 H20 N2 O11' _chem_comp.formula_weight 464.38 _chem_comp.id 2DS _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2,3-dihydroxyphenyl)carbonyl]-O-[(2R)-2-{[(2,3-dihydroxyphenyl)carbonyl]amino}-3-hydroxypropanoyl]-L-serine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C16 2DS sing 1 n y N1 C22 2DS sing 2 n n N1 HN1 2DS sing 3 n n O1 C1 2DS sing 4 n n O1 HO1 2DS sing 5 n n C3 O3 2DS sing 6 n n C3 C18 2DS sing 7 n y N3 C24 2DS sing 8 n n N3 HN3 2DS sing 9 n n O3 HO3 2DS sing 10 n n C4 C1 2DS doub 11 n y C4 C7 2DS sing 12 n y O4 C4 2DS sing 13 n n O4 HO4 2DS sing 14 n n C6 C3 2DS doub 15 n y O6 C6 2DS sing 16 n n O6 HO6 2DS sing 17 n n C7 C10 2DS doub 18 n y C7 H7 2DS sing 19 n n C9 C6 2DS sing 20 n y C9 C12 2DS doub 21 n y C9 H9 2DS sing 22 n n C10 C13 2DS sing 23 n y C10 H10 2DS sing 24 n n O10 C25 2DS doub 25 n n C12 C15 2DS sing 26 n y C12 H12 2DS sing 27 n n C13 H13 2DS sing 28 n n O14 HO14 2DS sing 29 n n C15 C18 2DS doub 30 n y C15 H15 2DS sing 31 n n C16 C13 2DS doub 32 n y C16 C19 2DS sing 33 n n C18 C21 2DS sing 34 n n C19 N1 2DS sing 35 n n C19 O7 2DS doub 36 n n C21 N3 2DS sing 37 n n C21 O9 2DS doub 38 n n C22 C25 2DS sing 39 n n C22 C20 2DS sing 40 n n C22 H22 2DS sing 41 n n C24 C30 2DS sing 42 n n C24 C27 2DS sing 43 n n C24 H24 2DS sing 44 n n C25 O15 2DS sing 45 n n C27 O12 2DS doub 46 n n C27 O14 2DS sing 47 n n C30 O15 2DS sing 48 n n C30 H30 2DS sing 49 n n C30 H30A 2DS sing 50 n n C20 O11 2DS sing 51 n n C20 H18 2DS sing 52 n n C20 H19 2DS sing 53 n n O11 H20 2DS sing 54 n n # _atom_sites.entry_id 3I0A _atom_sites.fract_transf_matrix[1][1] 0.008753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 179 1 SO4 SO4 . E 3 FE A 1 180 1 FE FE . F 4 3ET A 1 181 1 3ET 3ET . G 5 2DS A 1 182 1 2DS 2DS . H 3 FE B 1 179 1 FE FE . I 6 DBH B 1 180 1 DBH DBH . J 2 SO4 C 1 179 3 SO4 SO4 . K 3 FE C 1 180 1 FE FE . L 7 GOL C 1 181 2 GOL GOL . M 7 GOL C 1 182 3 GOL GOL . N 8 MCJ C 1 183 1 MCJ MCC . O 9 HOH A 1 183 2 HOH HOH . O 9 HOH A 2 184 5 HOH HOH . O 9 HOH A 3 185 7 HOH HOH . O 9 HOH A 4 186 9 HOH HOH . O 9 HOH A 5 187 10 HOH HOH . O 9 HOH A 6 188 12 HOH HOH . O 9 HOH A 7 189 15 HOH HOH . O 9 HOH A 8 190 19 HOH HOH . O 9 HOH A 9 191 23 HOH HOH . O 9 HOH A 10 192 35 HOH HOH . O 9 HOH A 11 193 37 HOH HOH . O 9 HOH A 12 194 39 HOH HOH . O 9 HOH A 13 195 50 HOH HOH . O 9 HOH A 14 196 55 HOH HOH . O 9 HOH A 15 197 56 HOH HOH . O 9 HOH A 16 198 58 HOH HOH . O 9 HOH A 17 199 62 HOH HOH . O 9 HOH A 18 200 64 HOH HOH . O 9 HOH A 19 201 65 HOH HOH . O 9 HOH A 20 202 67 HOH HOH . O 9 HOH A 21 203 71 HOH HOH . O 9 HOH A 22 204 72 HOH HOH . O 9 HOH A 23 205 78 HOH HOH . O 9 HOH A 24 206 79 HOH HOH . O 9 HOH A 25 207 101 HOH HOH . O 9 HOH A 26 208 107 HOH HOH . O 9 HOH A 27 209 115 HOH HOH . O 9 HOH A 28 210 120 HOH HOH . O 9 HOH A 29 211 121 HOH HOH . O 9 HOH A 30 212 124 HOH HOH . O 9 HOH A 31 213 128 HOH HOH . O 9 HOH A 32 214 131 HOH HOH . O 9 HOH A 33 215 134 HOH HOH . O 9 HOH A 34 216 135 HOH HOH . O 9 HOH A 35 217 143 HOH HOH . O 9 HOH A 36 218 146 HOH HOH . O 9 HOH A 37 219 147 HOH HOH . O 9 HOH A 38 220 148 HOH HOH . P 9 HOH B 1 181 82 HOH HOH . P 9 HOH B 2 182 93 HOH HOH . P 9 HOH B 3 183 112 HOH HOH . P 9 HOH B 4 184 136 HOH HOH . P 9 HOH B 5 185 144 HOH HOH . Q 9 HOH C 1 184 3 HOH HOH . Q 9 HOH C 2 185 4 HOH HOH . Q 9 HOH C 3 186 8 HOH HOH . Q 9 HOH C 4 187 11 HOH HOH . Q 9 HOH C 5 188 13 HOH HOH . Q 9 HOH C 6 189 14 HOH HOH . Q 9 HOH C 7 190 16 HOH HOH . Q 9 HOH C 8 191 17 HOH HOH . Q 9 HOH C 9 192 21 HOH HOH . Q 9 HOH C 10 193 22 HOH HOH . Q 9 HOH C 11 194 24 HOH HOH . Q 9 HOH C 12 195 25 HOH HOH . Q 9 HOH C 13 196 27 HOH HOH . Q 9 HOH C 14 197 28 HOH HOH . Q 9 HOH C 15 198 30 HOH HOH . Q 9 HOH C 16 199 31 HOH HOH . Q 9 HOH C 17 200 33 HOH HOH . Q 9 HOH C 18 201 34 HOH HOH . Q 9 HOH C 19 202 36 HOH HOH . Q 9 HOH C 20 203 38 HOH HOH . Q 9 HOH C 21 204 41 HOH HOH . Q 9 HOH C 22 205 42 HOH HOH . Q 9 HOH C 23 206 43 HOH HOH . Q 9 HOH C 24 207 44 HOH HOH . Q 9 HOH C 25 208 45 HOH HOH . Q 9 HOH C 26 209 46 HOH HOH . Q 9 HOH C 27 210 47 HOH HOH . Q 9 HOH C 28 211 48 HOH HOH . Q 9 HOH C 29 212 49 HOH HOH . Q 9 HOH C 30 213 51 HOH HOH . Q 9 HOH C 31 214 52 HOH HOH . Q 9 HOH C 32 215 54 HOH HOH . Q 9 HOH C 33 216 60 HOH HOH . Q 9 HOH C 34 217 61 HOH HOH . Q 9 HOH C 35 218 68 HOH HOH . Q 9 HOH C 36 219 69 HOH HOH . Q 9 HOH C 37 220 70 HOH HOH . Q 9 HOH C 38 221 80 HOH HOH . Q 9 HOH C 39 222 85 HOH HOH . Q 9 HOH C 40 223 91 HOH HOH . Q 9 HOH C 41 224 99 HOH HOH . Q 9 HOH C 42 225 104 HOH HOH . Q 9 HOH C 43 226 105 HOH HOH . Q 9 HOH C 44 227 106 HOH HOH . Q 9 HOH C 45 228 108 HOH HOH . Q 9 HOH C 46 229 111 HOH HOH . Q 9 HOH C 47 230 116 HOH HOH . Q 9 HOH C 48 231 127 HOH HOH . Q 9 HOH C 49 232 129 HOH HOH . Q 9 HOH C 50 233 137 HOH HOH . Q 9 HOH C 51 234 138 HOH HOH . Q 9 HOH C 52 235 139 HOH HOH . Q 9 HOH C 53 236 140 HOH HOH . Q 9 HOH C 54 237 141 HOH HOH . Q 9 HOH C 55 238 142 HOH HOH . Q 9 HOH C 56 239 145 HOH HOH . Q 9 HOH C 57 240 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2DS . . . G 5 25.97 76.822 66.521 1 31.73 ? C1 2DS 182 A 1 HETATM 2 N N1 2DS . . . G 5 26.308 78.882 68.57 1 35.46 ? N1 2DS 182 A 1 HETATM 3 O O1 2DS . . . G 5 26.929 77.75 66.223 1 30.27 ? O1 2DS 182 A 1 HETATM 4 C C3 2DS . . . G 5 30.532 75.787 65.339 1 32.51 ? C3 2DS 182 A 1 HETATM 5 N N3 2DS . . . G 5 30.733 76.957 67.99 1 39.38 ? N3 2DS 182 A 1 HETATM 6 O O3 2DS . . . G 5 29.623 76.768 65.636 1 32.58 ? O3 2DS 182 A 1 HETATM 7 C C4 2DS . . . G 5 25.876 75.704 65.704 1 32.5 ? C4 2DS 182 A 1 HETATM 8 O O4 2DS . . . G 5 26.74 75.58 64.65 1 32.38 ? O4 2DS 182 A 1 HETATM 9 C C6 2DS . . . G 5 30.569 75.272 64.049 1 31.24 ? C6 2DS 182 A 1 HETATM 10 O O6 2DS . . . G 5 29.709 75.754 63.103 1 30.78 ? O6 2DS 182 A 1 HETATM 11 C C7 2DS . . . G 5 24.919 74.721 65.954 1 32.34 ? C7 2DS 182 A 1 HETATM 12 O O7 2DS . . . G 5 24.234 78.45 69.254 1 34.84 ? O7 2DS 182 A 1 HETATM 13 C C9 2DS . . . G 5 31.483 74.272 63.718 1 31.26 ? C9 2DS 182 A 1 HETATM 14 O O9 2DS . . . G 5 31.993 75.185 68.578 1 38.45 ? O9 2DS 182 A 1 HETATM 15 C C10 2DS . . . G 5 24.055 74.865 67.035 1 32.01 ? C10 2DS 182 A 1 HETATM 16 O O10 2DS . . . G 5 28.796 81.021 69.085 1 37.78 ? O10 2DS 182 A 1 HETATM 17 C C12 2DS . . . G 5 32.359 73.787 64.682 1 32.41 ? C12 2DS 182 A 1 HETATM 18 O O12 2DS . . . G 5 30.668 75.708 70.751 1 42.97 ? O12 2DS 182 A 1 HETATM 19 C C13 2DS . . . G 5 24.153 75.988 67.853 1 32.48 ? C13 2DS 182 A 1 HETATM 20 O O14 2DS . . . G 5 32.422 77.073 70.759 1 44.03 ? O14 2DS 182 A 1 HETATM 21 C C15 2DS . . . G 5 32.319 74.301 65.976 1 33.12 ? C15 2DS 182 A 1 HETATM 22 O O15 2DS . . . G 5 28.838 78.993 70.207 1 39.77 ? O15 2DS 182 A 1 HETATM 23 C C16 2DS . . . G 5 25.105 76.977 67.605 1 32.49 ? C16 2DS 182 A 1 HETATM 24 C C18 2DS . . . G 5 31.407 75.302 66.308 1 33.85 ? C18 2DS 182 A 1 HETATM 25 C C19 2DS . . . G 5 25.183 78.169 68.533 1 34.37 ? C19 2DS 182 A 1 HETATM 26 C C21 2DS . . . G 5 31.393 75.825 67.719 1 36.42 ? C21 2DS 182 A 1 HETATM 27 C C22 2DS . . . G 5 26.639 80.052 69.373 1 37.1 ? C22 2DS 182 A 1 HETATM 28 C C24 2DS . . . G 5 30.628 77.586 69.31 1 40.26 ? C24 2DS 182 A 1 HETATM 29 C C25 2DS . . . G 5 28.144 80.087 69.529 1 37.81 ? C25 2DS 182 A 1 HETATM 30 C C27 2DS . . . G 5 31.278 76.737 70.359 1 41.76 ? C27 2DS 182 A 1 HETATM 31 C C30 2DS . . . G 5 29.12 77.762 69.531 1 39.83 ? C30 2DS 182 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #