data_3I0M # _model_server_result.job_id DFOeertpH1kTRyfHtqeBxw _model_server_result.datetime_utc '2025-03-06 01:28:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":325}' # _entry.id 3I0M # _exptl.entry_id 3I0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3I0M _cell.length_a 55.523 _cell.length_b 62.385 _cell.length_c 93.352 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N TRP 2 A TRP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C SER 115 A SER 115 1_555 A N MSE 116 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 116 A MSE 116 1_555 A N CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C GLU 124 A GLU 124 1_555 A N MSE 125 A MSE 125 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C GLU 124 A GLU 124 1_555 A N MSE 125 A MSE 125 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 125 A MSE 125 1_555 A N LEU 126 A LEU 126 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 125 A MSE 125 1_555 A N LEU 126 A LEU 126 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C VAL 152 A VAL 152 1_555 A N MSE 153 A MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C MSE 153 A MSE 153 1_555 A N ASN 154 A ASN 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C THR 165 A THR 165 1_555 A N MSE 166 A MSE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 166 A MSE 166 1_555 A N TYR 167 A TYR 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C LEU 197 A LEU 197 1_555 A N MSE 198 A MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C MSE 198 A MSE 198 1_555 A N PRO 199 A PRO 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale14 A C ALA 232 A ALA 232 1_555 A N MSE 233 A MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 A C MSE 233 A MSE 233 1_555 A N LEU 234 A LEU 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 A C PHE 254 A PHE 254 1_555 A N MSE 255 A MSE 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale17 A C MSE 255 A MSE 255 1_555 A N SER 256 A SER 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3I0M _atom_sites.fract_transf_matrix[1][1] 0.018011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 325 325 GOL GOL . C 3 HOH A 1 326 326 HOH HOH . C 3 HOH A 2 327 327 HOH HOH . C 3 HOH A 3 328 328 HOH HOH . C 3 HOH A 4 329 329 HOH HOH . C 3 HOH A 5 330 330 HOH HOH . C 3 HOH A 6 331 331 HOH HOH . C 3 HOH A 7 332 332 HOH HOH . C 3 HOH A 8 333 333 HOH HOH . C 3 HOH A 9 334 334 HOH HOH . C 3 HOH A 10 335 335 HOH HOH . C 3 HOH A 11 336 336 HOH HOH . C 3 HOH A 12 337 337 HOH HOH . C 3 HOH A 13 338 338 HOH HOH . C 3 HOH A 14 339 339 HOH HOH . C 3 HOH A 15 340 340 HOH HOH . C 3 HOH A 16 341 341 HOH HOH . C 3 HOH A 17 342 342 HOH HOH . C 3 HOH A 18 343 343 HOH HOH . C 3 HOH A 19 344 344 HOH HOH . C 3 HOH A 20 345 345 HOH HOH . C 3 HOH A 21 346 346 HOH HOH . C 3 HOH A 22 347 347 HOH HOH . C 3 HOH A 23 348 348 HOH HOH . C 3 HOH A 24 349 349 HOH HOH . C 3 HOH A 25 350 350 HOH HOH . C 3 HOH A 26 351 351 HOH HOH . C 3 HOH A 27 352 352 HOH HOH . C 3 HOH A 28 353 353 HOH HOH . C 3 HOH A 29 354 354 HOH HOH . C 3 HOH A 30 355 355 HOH HOH . C 3 HOH A 31 356 356 HOH HOH . C 3 HOH A 32 357 357 HOH HOH . C 3 HOH A 33 358 358 HOH HOH . C 3 HOH A 34 359 359 HOH HOH . C 3 HOH A 35 360 360 HOH HOH . C 3 HOH A 36 361 361 HOH HOH . C 3 HOH A 37 362 362 HOH HOH . C 3 HOH A 38 363 363 HOH HOH . C 3 HOH A 39 364 364 HOH HOH . C 3 HOH A 40 365 365 HOH HOH . C 3 HOH A 41 366 366 HOH HOH . C 3 HOH A 42 367 367 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 50.51 12.143 46.801 1 66.74 ? C1 GOL 325 A 1 HETATM 2 O O1 GOL . . . B 2 49.966 13.46 46.817 1 65.92 ? O1 GOL 325 A 1 HETATM 3 C C2 GOL . . . B 2 49.69 11.156 47.643 1 65.26 ? C2 GOL 325 A 1 HETATM 4 O O2 GOL . . . B 2 49.54 11.695 48.932 1 64.25 ? O2 GOL 325 A 1 HETATM 5 C C3 GOL . . . B 2 50.413 9.812 47.746 1 65.18 ? C3 GOL 325 A 1 HETATM 6 O O3 GOL . . . B 2 49.607 8.748 47.267 1 64.7 ? O3 GOL 325 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #