data_3I0P # _model_server_result.job_id JXNGfkxd5Gf8reIooPYgLA _model_server_result.datetime_utc '2024-12-26 22:29:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3I0P # _exptl.entry_id 3I0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I0P _cell.length_a 106.23 _cell.length_b 106.23 _cell.length_c 72.114 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 72.114 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 250 n n PA O2A NAD sing 251 n n PA O5B NAD sing 252 n n PA O3 NAD sing 253 n n O2A HOA2 NAD sing 254 n n O5B C5B NAD sing 255 n n C5B C4B NAD sing 256 n n C5B H51A NAD sing 257 n n C5B H52A NAD sing 258 n n C4B O4B NAD sing 259 n n C4B C3B NAD sing 260 n n C4B H4B NAD sing 261 n n O4B C1B NAD sing 262 n n C3B O3B NAD sing 263 n n C3B C2B NAD sing 264 n n C3B H3B NAD sing 265 n n O3B HO3A NAD sing 266 n n C2B O2B NAD sing 267 n n C2B C1B NAD sing 268 n n C2B H2B NAD sing 269 n n O2B HO2A NAD sing 270 n n C1B N9A NAD sing 271 n n C1B H1B NAD sing 272 n n N9A C8A NAD sing 273 n y N9A C4A NAD sing 274 n y C8A N7A NAD doub 275 n y C8A H8A NAD sing 276 n n N7A C5A NAD sing 277 n y C5A C6A NAD sing 278 n y C5A C4A NAD doub 279 n y C6A N6A NAD sing 280 n n C6A N1A NAD doub 281 n y N6A H61A NAD sing 282 n n N6A H62A NAD sing 283 n n N1A C2A NAD sing 284 n y C2A N3A NAD doub 285 n y C2A H2A NAD sing 286 n n N3A C4A NAD sing 287 n y O3 PN NAD sing 288 n n PN O1N NAD doub 289 n n PN O2N NAD sing 290 n n PN O5D NAD sing 291 n n O5D C5D NAD sing 292 n n C5D C4D NAD sing 293 n n C5D H51N NAD sing 294 n n C5D H52N NAD sing 295 n n C4D O4D NAD sing 296 n n C4D C3D NAD sing 297 n n C4D H4D NAD sing 298 n n O4D C1D NAD sing 299 n n C3D O3D NAD sing 300 n n C3D C2D NAD sing 301 n n C3D H3D NAD sing 302 n n O3D HO3N NAD sing 303 n n C2D O2D NAD sing 304 n n C2D C1D NAD sing 305 n n C2D H2D NAD sing 306 n n O2D HO2N NAD sing 307 n n C1D N1N NAD sing 308 n n C1D H1D NAD sing 309 n n N1N C2N NAD sing 310 n y N1N C6N NAD doub 311 n y C2N C3N NAD doub 312 n y C2N H2N NAD sing 313 n n C3N C7N NAD sing 314 n n C3N C4N NAD sing 315 n y C7N O7N NAD doub 316 n n C7N N7N NAD sing 317 n n N7N H71N NAD sing 318 n n N7N H72N NAD sing 319 n n C4N C5N NAD doub 320 n y C4N H4N NAD sing 321 n n C5N C6N NAD sing 322 n y C5N H5N NAD sing 323 n n C6N H6N NAD sing 324 n n # _atom_sites.entry_id 3I0P _atom_sites.fract_transf_matrix[1][1] 0.009414 _atom_sites.fract_transf_matrix[1][2] 0.005435 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 401 401 NAD NAD . C 3 GOL A 1 402 402 GOL GOL . D 4 HOH A 1 366 1 HOH HOH . D 4 HOH A 2 367 2 HOH HOH . D 4 HOH A 3 368 3 HOH HOH . D 4 HOH A 4 369 4 HOH HOH . D 4 HOH A 5 370 5 HOH HOH . D 4 HOH A 6 371 6 HOH HOH . D 4 HOH A 7 372 7 HOH HOH . D 4 HOH A 8 373 8 HOH HOH . D 4 HOH A 9 374 9 HOH HOH . D 4 HOH A 10 375 10 HOH HOH . D 4 HOH A 11 376 11 HOH HOH . D 4 HOH A 12 377 12 HOH HOH . D 4 HOH A 13 378 13 HOH HOH . D 4 HOH A 14 379 14 HOH HOH . D 4 HOH A 15 380 15 HOH HOH . D 4 HOH A 16 381 16 HOH HOH . D 4 HOH A 17 382 17 HOH HOH . D 4 HOH A 18 383 18 HOH HOH . D 4 HOH A 19 384 19 HOH HOH . D 4 HOH A 20 385 20 HOH HOH . D 4 HOH A 21 386 21 HOH HOH . D 4 HOH A 22 387 22 HOH HOH . D 4 HOH A 23 388 23 HOH HOH . D 4 HOH A 24 389 24 HOH HOH . D 4 HOH A 25 390 25 HOH HOH . D 4 HOH A 26 391 26 HOH HOH . D 4 HOH A 27 392 27 HOH HOH . D 4 HOH A 28 393 28 HOH HOH . D 4 HOH A 29 394 29 HOH HOH . D 4 HOH A 30 395 30 HOH HOH . D 4 HOH A 31 396 31 HOH HOH . D 4 HOH A 32 397 32 HOH HOH . D 4 HOH A 33 398 33 HOH HOH . D 4 HOH A 34 399 34 HOH HOH . D 4 HOH A 35 400 35 HOH HOH . D 4 HOH A 36 403 36 HOH HOH . D 4 HOH A 37 404 37 HOH HOH . D 4 HOH A 38 405 38 HOH HOH . D 4 HOH A 39 406 39 HOH HOH . D 4 HOH A 40 407 40 HOH HOH . D 4 HOH A 41 408 41 HOH HOH . D 4 HOH A 42 409 42 HOH HOH . D 4 HOH A 43 410 43 HOH HOH . D 4 HOH A 44 411 44 HOH HOH . D 4 HOH A 45 412 45 HOH HOH . D 4 HOH A 46 413 46 HOH HOH . D 4 HOH A 47 414 47 HOH HOH . D 4 HOH A 48 415 48 HOH HOH . D 4 HOH A 49 416 49 HOH HOH . D 4 HOH A 50 417 50 HOH HOH . D 4 HOH A 51 418 51 HOH HOH . D 4 HOH A 52 419 52 HOH HOH . D 4 HOH A 53 420 53 HOH HOH . D 4 HOH A 54 421 54 HOH HOH . D 4 HOH A 55 422 55 HOH HOH . D 4 HOH A 56 423 56 HOH HOH . D 4 HOH A 57 424 57 HOH HOH . D 4 HOH A 58 425 58 HOH HOH . D 4 HOH A 59 426 59 HOH HOH . D 4 HOH A 60 427 60 HOH HOH . D 4 HOH A 61 428 61 HOH HOH . D 4 HOH A 62 429 62 HOH HOH . D 4 HOH A 63 430 63 HOH HOH . D 4 HOH A 64 431 64 HOH HOH . D 4 HOH A 65 432 65 HOH HOH . D 4 HOH A 66 433 66 HOH HOH . D 4 HOH A 67 434 67 HOH HOH . D 4 HOH A 68 435 68 HOH HOH . D 4 HOH A 69 436 69 HOH HOH . D 4 HOH A 70 437 70 HOH HOH . D 4 HOH A 71 438 71 HOH HOH . D 4 HOH A 72 439 72 HOH HOH . D 4 HOH A 73 440 73 HOH HOH . D 4 HOH A 74 441 74 HOH HOH . D 4 HOH A 75 442 75 HOH HOH . D 4 HOH A 76 443 76 HOH HOH . D 4 HOH A 77 444 77 HOH HOH . D 4 HOH A 78 445 78 HOH HOH . D 4 HOH A 79 446 79 HOH HOH . D 4 HOH A 80 447 80 HOH HOH . D 4 HOH A 81 448 81 HOH HOH . D 4 HOH A 82 449 82 HOH HOH . D 4 HOH A 83 450 83 HOH HOH . D 4 HOH A 84 451 84 HOH HOH . D 4 HOH A 85 452 85 HOH HOH . D 4 HOH A 86 453 86 HOH HOH . D 4 HOH A 87 454 87 HOH HOH . D 4 HOH A 88 455 88 HOH HOH . D 4 HOH A 89 456 89 HOH HOH . D 4 HOH A 90 457 90 HOH HOH . D 4 HOH A 91 458 91 HOH HOH . D 4 HOH A 92 459 92 HOH HOH . D 4 HOH A 93 460 93 HOH HOH . D 4 HOH A 94 461 94 HOH HOH . D 4 HOH A 95 462 95 HOH HOH . D 4 HOH A 96 463 96 HOH HOH . D 4 HOH A 97 464 97 HOH HOH . D 4 HOH A 98 465 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 25.657 26.199 28.697 1 21.42 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . B 2 26.613 25.364 27.88 1 22.92 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . B 2 24.372 25.58 29.144 1 22.83 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . B 2 26.486 26.704 29.979 1 23.53 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . B 2 27.776 27.317 29.805 1 23.7 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . B 2 28.257 28.041 31.07 1 24.76 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . B 2 27.92 27.319 32.262 1 26.17 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . B 2 29.764 28.189 31.114 1 24.91 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . B 2 30.08 29.394 31.831 1 24.87 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . B 2 30.223 26.979 31.898 1 25.6 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . B 2 31.475 27.213 32.543 1 26.47 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . B 2 29.106 26.837 32.912 1 26.99 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . B 2 28.883 25.449 33.412 1 28.08 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . B 2 28.506 24.38 32.695 1 27.82 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . B 2 28.385 23.327 33.532 1 28.28 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . B 2 28.68 23.748 34.784 1 28.79 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . B 2 28.728 23.136 36.041 1 29.03 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . B 2 28.443 21.82 36.192 1 29.09 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . B 2 29.078 23.864 37.129 1 28.84 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . B 2 29.373 25.166 37.015 1 28.63 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . B 2 29.329 25.778 35.824 1 29.25 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . B 2 28.989 25.091 34.697 1 28.66 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . B 2 25.353 27.618 27.962 1 23.1 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . B 2 24.502 27.898 26.602 1 21.48 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . B 2 23.285 28.7 26.996 1 22.4 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . B 2 24.356 26.629 25.799 1 22.63 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . B 2 25.459 28.866 25.757 1 21.69 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . B 2 26.548 28.342 24.991 1 21.66 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . B 2 27.195 29.448 24.161 1 20.44 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . B 2 26.265 29.967 23.206 1 21.02 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . B 2 27.636 30.629 25.016 1 19.71 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . B 2 29.03 30.857 24.766 1 18.42 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . B 2 26.753 31.799 24.582 1 18.98 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . B 2 27.392 33.088 24.56 1 18.97 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . B 2 26.379 31.394 23.174 1 19.7 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . B 2 25.155 32.051 22.721 1 20.08 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . B 2 25.269 33.1 21.876 1 19.86 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . B 2 24.126 33.759 21.415 1 20.2 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . B 2 24.232 34.929 20.477 1 20.23 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . B 2 23.205 35.475 20.094 1 20.91 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . B 2 25.434 35.344 20.084 1 18.39 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . B 2 22.869 33.318 21.838 1 20.56 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . B 2 22.781 32.236 22.72 1 20.81 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . B 2 23.952 31.612 23.148 1 19.98 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #