data_3I0P # _model_server_result.job_id xIEyx44OcBRGTQlX_PAuig _model_server_result.datetime_utc '2024-12-26 22:50:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 3I0P # _exptl.entry_id 3I0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I0P _cell.length_a 106.23 _cell.length_b 106.23 _cell.length_c 72.114 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 72.114 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3I0P _atom_sites.fract_transf_matrix[1][1] 0.009414 _atom_sites.fract_transf_matrix[1][2] 0.005435 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 401 401 NAD NAD . C 3 GOL A 1 402 402 GOL GOL . D 4 HOH A 1 366 1 HOH HOH . D 4 HOH A 2 367 2 HOH HOH . D 4 HOH A 3 368 3 HOH HOH . D 4 HOH A 4 369 4 HOH HOH . D 4 HOH A 5 370 5 HOH HOH . D 4 HOH A 6 371 6 HOH HOH . D 4 HOH A 7 372 7 HOH HOH . D 4 HOH A 8 373 8 HOH HOH . D 4 HOH A 9 374 9 HOH HOH . D 4 HOH A 10 375 10 HOH HOH . D 4 HOH A 11 376 11 HOH HOH . D 4 HOH A 12 377 12 HOH HOH . D 4 HOH A 13 378 13 HOH HOH . D 4 HOH A 14 379 14 HOH HOH . D 4 HOH A 15 380 15 HOH HOH . D 4 HOH A 16 381 16 HOH HOH . D 4 HOH A 17 382 17 HOH HOH . D 4 HOH A 18 383 18 HOH HOH . D 4 HOH A 19 384 19 HOH HOH . D 4 HOH A 20 385 20 HOH HOH . D 4 HOH A 21 386 21 HOH HOH . D 4 HOH A 22 387 22 HOH HOH . D 4 HOH A 23 388 23 HOH HOH . D 4 HOH A 24 389 24 HOH HOH . D 4 HOH A 25 390 25 HOH HOH . D 4 HOH A 26 391 26 HOH HOH . D 4 HOH A 27 392 27 HOH HOH . D 4 HOH A 28 393 28 HOH HOH . D 4 HOH A 29 394 29 HOH HOH . D 4 HOH A 30 395 30 HOH HOH . D 4 HOH A 31 396 31 HOH HOH . D 4 HOH A 32 397 32 HOH HOH . D 4 HOH A 33 398 33 HOH HOH . D 4 HOH A 34 399 34 HOH HOH . D 4 HOH A 35 400 35 HOH HOH . D 4 HOH A 36 403 36 HOH HOH . D 4 HOH A 37 404 37 HOH HOH . D 4 HOH A 38 405 38 HOH HOH . D 4 HOH A 39 406 39 HOH HOH . D 4 HOH A 40 407 40 HOH HOH . D 4 HOH A 41 408 41 HOH HOH . D 4 HOH A 42 409 42 HOH HOH . D 4 HOH A 43 410 43 HOH HOH . D 4 HOH A 44 411 44 HOH HOH . D 4 HOH A 45 412 45 HOH HOH . D 4 HOH A 46 413 46 HOH HOH . D 4 HOH A 47 414 47 HOH HOH . D 4 HOH A 48 415 48 HOH HOH . D 4 HOH A 49 416 49 HOH HOH . D 4 HOH A 50 417 50 HOH HOH . D 4 HOH A 51 418 51 HOH HOH . D 4 HOH A 52 419 52 HOH HOH . D 4 HOH A 53 420 53 HOH HOH . D 4 HOH A 54 421 54 HOH HOH . D 4 HOH A 55 422 55 HOH HOH . D 4 HOH A 56 423 56 HOH HOH . D 4 HOH A 57 424 57 HOH HOH . D 4 HOH A 58 425 58 HOH HOH . D 4 HOH A 59 426 59 HOH HOH . D 4 HOH A 60 427 60 HOH HOH . D 4 HOH A 61 428 61 HOH HOH . D 4 HOH A 62 429 62 HOH HOH . D 4 HOH A 63 430 63 HOH HOH . D 4 HOH A 64 431 64 HOH HOH . D 4 HOH A 65 432 65 HOH HOH . D 4 HOH A 66 433 66 HOH HOH . D 4 HOH A 67 434 67 HOH HOH . D 4 HOH A 68 435 68 HOH HOH . D 4 HOH A 69 436 69 HOH HOH . D 4 HOH A 70 437 70 HOH HOH . D 4 HOH A 71 438 71 HOH HOH . D 4 HOH A 72 439 72 HOH HOH . D 4 HOH A 73 440 73 HOH HOH . D 4 HOH A 74 441 74 HOH HOH . D 4 HOH A 75 442 75 HOH HOH . D 4 HOH A 76 443 76 HOH HOH . D 4 HOH A 77 444 77 HOH HOH . D 4 HOH A 78 445 78 HOH HOH . D 4 HOH A 79 446 79 HOH HOH . D 4 HOH A 80 447 80 HOH HOH . D 4 HOH A 81 448 81 HOH HOH . D 4 HOH A 82 449 82 HOH HOH . D 4 HOH A 83 450 83 HOH HOH . D 4 HOH A 84 451 84 HOH HOH . D 4 HOH A 85 452 85 HOH HOH . D 4 HOH A 86 453 86 HOH HOH . D 4 HOH A 87 454 87 HOH HOH . D 4 HOH A 88 455 88 HOH HOH . D 4 HOH A 89 456 89 HOH HOH . D 4 HOH A 90 457 90 HOH HOH . D 4 HOH A 91 458 91 HOH HOH . D 4 HOH A 92 459 92 HOH HOH . D 4 HOH A 93 460 93 HOH HOH . D 4 HOH A 94 461 94 HOH HOH . D 4 HOH A 95 462 95 HOH HOH . D 4 HOH A 96 463 96 HOH HOH . D 4 HOH A 97 464 97 HOH HOH . D 4 HOH A 98 465 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 49.008 24.399 11.154 1 32.75 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 3 50.058 25.325 10.959 1 32.98 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 3 49.495 23.032 11.649 1 31.69 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 3 49.344 22.931 13.047 1 31.76 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 3 50.934 22.728 11.227 1 31.16 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 3 51.886 23.27 12.116 1 29.27 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #