data_3I0Q
#
_model_server_result.job_id            zLmrvmVGm8J1Vjg3KBcuRg 
_model_server_result.datetime_utc      '2024-12-22 05:48:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i0q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":400}' 
#
_entry.id    3I0Q 
#
_exptl.entry_id    3I0Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3I0Q 
_cell.length_a            74.466 
_cell.length_b            74.466 
_cell.length_c            135.526 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3I0Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 70 A HIS 70 1_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc2 D O HOH . A HOH 513 1_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     3I0Q 
_atom_sites.fract_transf_matrix[1][1]    0.013429 
_atom_sites.fract_transf_matrix[1][2]    0.007753 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015506 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007379 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AMP A 1 400 400 AMP AMP . 
C 3 NI A 1 602 602 NI NI . 
D 4 HOH A 1 503 503 HOH HOH . 
D 4 HOH A 2 504 504 HOH HOH . 
D 4 HOH A 3 505 505 HOH HOH . 
D 4 HOH A 4 506 506 HOH HOH . 
D 4 HOH A 5 507 507 HOH HOH . 
D 4 HOH A 6 508 508 HOH HOH . 
D 4 HOH A 7 509 509 HOH HOH . 
D 4 HOH A 8 511 511 HOH HOH . 
D 4 HOH A 9 512 512 HOH HOH . 
D 4 HOH A 10 513 513 HOH HOH . 
D 4 HOH A 11 514 514 HOH HOH . 
D 4 HOH A 12 515 515 HOH HOH . 
D 4 HOH A 13 516 516 HOH HOH . 
D 4 HOH A 14 517 517 HOH HOH . 
D 4 HOH A 15 518 518 HOH HOH . 
D 4 HOH A 16 519 519 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . B 2 28.379 -14.946 14.445 1 83.15 ? P AMP 400 A 1 
HETATM 2 O O1P AMP . . . B 2 29.824 -14.656 14.668 1 81.99 ? O1P AMP 400 A 1 
HETATM 3 O O2P AMP . . . B 2 28.244 -15.909 13.153 1 83.83 ? O2P AMP 400 A 1 
HETATM 4 O O3P AMP . . . B 2 27.558 -15.545 15.54 1 82.76 ? O3P AMP 400 A 1 
HETATM 5 O O5' AMP . . . B 2 27.663 -13.591 13.933 1 80.26 ? O5' AMP 400 A 1 
HETATM 6 C C5' AMP . . . B 2 28.267 -12.765 12.925 1 76.76 ? C5' AMP 400 A 1 
HETATM 7 C C4' AMP . . . B 2 27.233 -12.308 11.888 1 73.95 ? C4' AMP 400 A 1 
HETATM 8 O O4' AMP . . . B 2 26.495 -13.409 11.359 1 73.09 ? O4' AMP 400 A 1 
HETATM 9 C C3' AMP . . . B 2 26.156 -11.371 12.424 1 72.83 ? C3' AMP 400 A 1 
HETATM 10 O O3' AMP . . . B 2 26.58 -10.013 12.211 1 71.87 ? O3' AMP 400 A 1 
HETATM 11 C C2' AMP . . . B 2 24.965 -11.692 11.495 1 71.53 ? C2' AMP 400 A 1 
HETATM 12 O O2' AMP . . . B 2 25.068 -10.874 10.316 1 71.09 ? O2' AMP 400 A 1 
HETATM 13 C C1' AMP . . . B 2 25.111 -13.163 11.08 1 69.5 ? C1' AMP 400 A 1 
HETATM 14 N N9 AMP . . . B 2 24.173 -14.133 11.725 1 67.09 ? N9 AMP 400 A 1 
HETATM 15 C C8 AMP . . . B 2 24.403 -14.934 12.822 1 65.68 ? C8 AMP 400 A 1 
HETATM 16 N N7 AMP . . . B 2 23.396 -15.688 13.159 1 64.88 ? N7 AMP 400 A 1 
HETATM 17 C C5 AMP . . . B 2 22.416 -15.379 12.231 1 64.82 ? C5 AMP 400 A 1 
HETATM 18 C C6 AMP . . . B 2 21.067 -15.847 12.034 1 64.97 ? C6 AMP 400 A 1 
HETATM 19 N N6 AMP . . . B 2 20.496 -16.762 12.82 1 62.89 ? N6 AMP 400 A 1 
HETATM 20 N N1 AMP . . . B 2 20.351 -15.321 10.994 1 65.19 ? N1 AMP 400 A 1 
HETATM 21 C C2 AMP . . . B 2 20.93 -14.396 10.199 1 66.92 ? C2 AMP 400 A 1 
HETATM 22 N N3 AMP . . . B 2 22.176 -13.885 10.284 1 65.54 ? N3 AMP 400 A 1 
HETATM 23 C C4 AMP . . . B 2 22.873 -14.427 11.339 1 65.65 ? C4 AMP 400 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#