data_3I15 # _model_server_result.job_id QZvI3TuMrimTPna2SjFbPA _model_server_result.datetime_utc '2025-07-30 19:05:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":228}' # _entry.id 3I15 # _exptl.entry_id 3I15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.24 _cell.angle_gamma 90 _cell.entry_id 3I15 _cell.length_a 53.188 _cell.length_b 61.822 _cell.length_c 69.521 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 167 A GLY 167 1_555 A N OCS 168 A OCS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C OCS 168 A OCS 168 1_555 A N LEU 169 A LEU 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 B CO CO . A CO 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc2 A ND1 HIS 88 A HIS 88 1_555 B CO CO . A CO 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc3 A NE2 HIS 149 A HIS 149 1_555 B CO CO . A CO 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc4 A OD1 OCS 168 A OCS 168 1_555 B CO CO . A CO 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc5 B CO CO . A CO 228 1_555 C O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc6 B CO CO . A CO 228 1_555 C O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3I15 _atom_sites.fract_transf_matrix[1][1] 0.018801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 228 1 CO CO . C 3 HOH A 1 229 229 HOH HOH . C 3 HOH A 2 230 230 HOH HOH . C 3 HOH A 3 231 231 HOH HOH . C 3 HOH A 4 232 232 HOH HOH . C 3 HOH A 5 233 233 HOH HOH . C 3 HOH A 6 234 234 HOH HOH . C 3 HOH A 7 235 235 HOH HOH . C 3 HOH A 8 236 236 HOH HOH . C 3 HOH A 9 237 237 HOH HOH . C 3 HOH A 10 238 238 HOH HOH . C 3 HOH A 11 239 239 HOH HOH . C 3 HOH A 12 240 240 HOH HOH . C 3 HOH A 13 241 241 HOH HOH . C 3 HOH A 14 242 242 HOH HOH . C 3 HOH A 15 243 1 HOH HOH . C 3 HOH A 16 244 244 HOH HOH . C 3 HOH A 17 245 245 HOH HOH . C 3 HOH A 18 246 2 HOH HOH . C 3 HOH A 19 247 247 HOH HOH . C 3 HOH A 20 248 248 HOH HOH . C 3 HOH A 21 249 249 HOH HOH . C 3 HOH A 22 250 250 HOH HOH . C 3 HOH A 23 251 251 HOH HOH . C 3 HOH A 24 252 3 HOH HOH . C 3 HOH A 25 253 253 HOH HOH . C 3 HOH A 26 254 4 HOH HOH . C 3 HOH A 27 255 255 HOH HOH . C 3 HOH A 28 256 256 HOH HOH . C 3 HOH A 29 257 5 HOH HOH . C 3 HOH A 30 258 258 HOH HOH . C 3 HOH A 31 259 259 HOH HOH . C 3 HOH A 32 260 260 HOH HOH . C 3 HOH A 33 261 261 HOH HOH . C 3 HOH A 34 262 6 HOH HOH . C 3 HOH A 35 263 7 HOH HOH . C 3 HOH A 36 264 264 HOH HOH . C 3 HOH A 37 265 265 HOH HOH . C 3 HOH A 38 266 266 HOH HOH . C 3 HOH A 39 267 267 HOH HOH . C 3 HOH A 40 268 268 HOH HOH . C 3 HOH A 41 269 269 HOH HOH . C 3 HOH A 42 270 270 HOH HOH . C 3 HOH A 43 271 271 HOH HOH . C 3 HOH A 44 272 272 HOH HOH . C 3 HOH A 45 273 273 HOH HOH . C 3 HOH A 46 274 8 HOH HOH . C 3 HOH A 47 275 275 HOH HOH . C 3 HOH A 48 276 9 HOH HOH . C 3 HOH A 49 277 277 HOH HOH . C 3 HOH A 50 278 278 HOH HOH . C 3 HOH A 51 279 10 HOH HOH . C 3 HOH A 52 280 11 HOH HOH . C 3 HOH A 53 281 281 HOH HOH . C 3 HOH A 54 282 282 HOH HOH . C 3 HOH A 55 283 12 HOH HOH . C 3 HOH A 56 284 284 HOH HOH . C 3 HOH A 57 285 285 HOH HOH . C 3 HOH A 58 286 13 HOH HOH . C 3 HOH A 59 287 287 HOH HOH . C 3 HOH A 60 288 288 HOH HOH . C 3 HOH A 61 289 289 HOH HOH . C 3 HOH A 62 290 290 HOH HOH . C 3 HOH A 63 291 291 HOH HOH . C 3 HOH A 64 292 292 HOH HOH . C 3 HOH A 65 293 293 HOH HOH . C 3 HOH A 66 294 294 HOH HOH . C 3 HOH A 67 295 295 HOH HOH . C 3 HOH A 68 296 296 HOH HOH . C 3 HOH A 69 297 297 HOH HOH . C 3 HOH A 70 298 298 HOH HOH . C 3 HOH A 71 299 299 HOH HOH . C 3 HOH A 72 300 300 HOH HOH . C 3 HOH A 73 301 301 HOH HOH . C 3 HOH A 74 302 302 HOH HOH . C 3 HOH A 75 303 303 HOH HOH . C 3 HOH A 76 304 304 HOH HOH . C 3 HOH A 77 305 305 HOH HOH . C 3 HOH A 78 306 306 HOH HOH . C 3 HOH A 79 307 307 HOH HOH . C 3 HOH A 80 308 14 HOH HOH . C 3 HOH A 81 309 309 HOH HOH . C 3 HOH A 82 310 310 HOH HOH . C 3 HOH A 83 311 311 HOH HOH . C 3 HOH A 84 312 312 HOH HOH . C 3 HOH A 85 313 313 HOH HOH . C 3 HOH A 86 314 314 HOH HOH . C 3 HOH A 87 315 315 HOH HOH . C 3 HOH A 88 316 15 HOH HOH . C 3 HOH A 89 317 16 HOH HOH . C 3 HOH A 90 318 17 HOH HOH . C 3 HOH A 91 319 18 HOH HOH . C 3 HOH A 92 320 19 HOH HOH . C 3 HOH A 93 321 20 HOH HOH . C 3 HOH A 94 322 21 HOH HOH . C 3 HOH A 95 323 22 HOH HOH . C 3 HOH A 96 324 23 HOH HOH . C 3 HOH A 97 325 24 HOH HOH . C 3 HOH A 98 326 25 HOH HOH . C 3 HOH A 99 327 26 HOH HOH . C 3 HOH A 100 328 27 HOH HOH . C 3 HOH A 101 329 28 HOH HOH . C 3 HOH A 102 330 29 HOH HOH . C 3 HOH A 103 331 30 HOH HOH . C 3 HOH A 104 332 31 HOH HOH . C 3 HOH A 105 333 32 HOH HOH . C 3 HOH A 106 334 33 HOH HOH . C 3 HOH A 107 335 34 HOH HOH . C 3 HOH A 108 336 35 HOH HOH . C 3 HOH A 109 337 36 HOH HOH . C 3 HOH A 110 338 37 HOH HOH . C 3 HOH A 111 339 38 HOH HOH . C 3 HOH A 112 340 39 HOH HOH . C 3 HOH A 113 341 40 HOH HOH . C 3 HOH A 114 342 41 HOH HOH . C 3 HOH A 115 343 42 HOH HOH . C 3 HOH A 116 344 44 HOH HOH . C 3 HOH A 117 345 45 HOH HOH . C 3 HOH A 118 346 46 HOH HOH . C 3 HOH A 119 347 47 HOH HOH . C 3 HOH A 120 348 48 HOH HOH . C 3 HOH A 121 349 49 HOH HOH . C 3 HOH A 122 350 50 HOH HOH . C 3 HOH A 123 351 51 HOH HOH . C 3 HOH A 124 352 52 HOH HOH . C 3 HOH A 125 353 53 HOH HOH . C 3 HOH A 126 354 54 HOH HOH . C 3 HOH A 127 355 56 HOH HOH . C 3 HOH A 128 356 57 HOH HOH . C 3 HOH A 129 357 58 HOH HOH . C 3 HOH A 130 358 59 HOH HOH . C 3 HOH A 131 359 60 HOH HOH . C 3 HOH A 132 360 61 HOH HOH . C 3 HOH A 133 361 62 HOH HOH . C 3 HOH A 134 362 63 HOH HOH . C 3 HOH A 135 363 64 HOH HOH . C 3 HOH A 136 364 65 HOH HOH . C 3 HOH A 137 365 66 HOH HOH . C 3 HOH A 138 366 67 HOH HOH . C 3 HOH A 139 367 68 HOH HOH . C 3 HOH A 140 368 69 HOH HOH . C 3 HOH A 141 369 70 HOH HOH . C 3 HOH A 142 370 71 HOH HOH . C 3 HOH A 143 371 72 HOH HOH . C 3 HOH A 144 372 73 HOH HOH . C 3 HOH A 145 373 74 HOH HOH . C 3 HOH A 146 374 75 HOH HOH . C 3 HOH A 147 375 76 HOH HOH . C 3 HOH A 148 376 77 HOH HOH . C 3 HOH A 149 377 78 HOH HOH . C 3 HOH A 150 378 79 HOH HOH . C 3 HOH A 151 379 80 HOH HOH . C 3 HOH A 152 380 81 HOH HOH . C 3 HOH A 153 381 82 HOH HOH . C 3 HOH A 154 382 83 HOH HOH . C 3 HOH A 155 383 84 HOH HOH . C 3 HOH A 156 384 85 HOH HOH . C 3 HOH A 157 385 86 HOH HOH . C 3 HOH A 158 386 87 HOH HOH . C 3 HOH A 159 387 88 HOH HOH . C 3 HOH A 160 388 89 HOH HOH . C 3 HOH A 161 389 90 HOH HOH . C 3 HOH A 162 390 91 HOH HOH . C 3 HOH A 163 391 92 HOH HOH . C 3 HOH A 164 392 93 HOH HOH . C 3 HOH A 165 393 94 HOH HOH . C 3 HOH A 166 394 95 HOH HOH . C 3 HOH A 167 395 96 HOH HOH . C 3 HOH A 168 396 97 HOH HOH . C 3 HOH A 169 397 98 HOH HOH . C 3 HOH A 170 398 99 HOH HOH . C 3 HOH A 171 399 100 HOH HOH . C 3 HOH A 172 400 101 HOH HOH . C 3 HOH A 173 401 102 HOH HOH . C 3 HOH A 174 402 103 HOH HOH . C 3 HOH A 175 403 104 HOH HOH . C 3 HOH A 176 404 105 HOH HOH . C 3 HOH A 177 405 106 HOH HOH . C 3 HOH A 178 406 107 HOH HOH . C 3 HOH A 179 407 108 HOH HOH . C 3 HOH A 180 408 109 HOH HOH . C 3 HOH A 181 409 110 HOH HOH . C 3 HOH A 182 410 111 HOH HOH . C 3 HOH A 183 411 112 HOH HOH . C 3 HOH A 184 412 113 HOH HOH . C 3 HOH A 185 413 114 HOH HOH . C 3 HOH A 186 414 115 HOH HOH . C 3 HOH A 187 415 116 HOH HOH . C 3 HOH A 188 416 117 HOH HOH . C 3 HOH A 189 417 118 HOH HOH . C 3 HOH A 190 418 119 HOH HOH . C 3 HOH A 191 419 120 HOH HOH . C 3 HOH A 192 420 121 HOH HOH . C 3 HOH A 193 421 123 HOH HOH . C 3 HOH A 194 422 124 HOH HOH . C 3 HOH A 195 423 125 HOH HOH . C 3 HOH A 196 424 128 HOH HOH . C 3 HOH A 197 425 129 HOH HOH . C 3 HOH A 198 426 130 HOH HOH . C 3 HOH A 199 427 131 HOH HOH . C 3 HOH A 200 428 132 HOH HOH . C 3 HOH A 201 429 133 HOH HOH . C 3 HOH A 202 430 135 HOH HOH . C 3 HOH A 203 431 137 HOH HOH . C 3 HOH A 204 432 138 HOH HOH . C 3 HOH A 205 433 140 HOH HOH . C 3 HOH A 206 434 141 HOH HOH . C 3 HOH A 207 435 143 HOH HOH . C 3 HOH A 208 436 144 HOH HOH . C 3 HOH A 209 437 145 HOH HOH . C 3 HOH A 210 438 146 HOH HOH . C 3 HOH A 211 439 148 HOH HOH . C 3 HOH A 212 440 149 HOH HOH . C 3 HOH A 213 441 160 HOH HOH . C 3 HOH A 214 442 165 HOH HOH . C 3 HOH A 215 443 167 HOH HOH . C 3 HOH A 216 444 168 HOH HOH . C 3 HOH A 217 445 174 HOH HOH . C 3 HOH A 218 446 180 HOH HOH . C 3 HOH A 219 447 181 HOH HOH . C 3 HOH A 220 448 182 HOH HOH . C 3 HOH A 221 449 183 HOH HOH . C 3 HOH A 222 450 184 HOH HOH . C 3 HOH A 223 451 185 HOH HOH . C 3 HOH A 224 452 186 HOH HOH . C 3 HOH A 225 453 187 HOH HOH . C 3 HOH A 226 454 188 HOH HOH . C 3 HOH A 227 455 189 HOH HOH . C 3 HOH A 228 456 190 HOH HOH . C 3 HOH A 229 457 191 HOH HOH . C 3 HOH A 230 458 192 HOH HOH . C 3 HOH A 231 459 193 HOH HOH . C 3 HOH A 232 460 194 HOH HOH . C 3 HOH A 233 461 195 HOH HOH . C 3 HOH A 234 462 196 HOH HOH . C 3 HOH A 235 463 197 HOH HOH . C 3 HOH A 236 464 198 HOH HOH . C 3 HOH A 237 465 199 HOH HOH . C 3 HOH A 238 466 200 HOH HOH . C 3 HOH A 239 467 201 HOH HOH . C 3 HOH A 240 468 202 HOH HOH . C 3 HOH A 241 469 203 HOH HOH . C 3 HOH A 242 470 204 HOH HOH . C 3 HOH A 243 471 205 HOH HOH . C 3 HOH A 244 472 206 HOH HOH . C 3 HOH A 245 473 207 HOH HOH . C 3 HOH A 246 474 208 HOH HOH . C 3 HOH A 247 475 209 HOH HOH . C 3 HOH A 248 476 210 HOH HOH . C 3 HOH A 249 477 211 HOH HOH . C 3 HOH A 250 478 212 HOH HOH . C 3 HOH A 251 479 213 HOH HOH . C 3 HOH A 252 480 214 HOH HOH . C 3 HOH A 253 481 215 HOH HOH . C 3 HOH A 254 482 216 HOH HOH . C 3 HOH A 255 483 217 HOH HOH . C 3 HOH A 256 484 218 HOH HOH . C 3 HOH A 257 485 219 HOH HOH . C 3 HOH A 258 486 220 HOH HOH . C 3 HOH A 259 487 221 HOH HOH . C 3 HOH A 260 488 222 HOH HOH . C 3 HOH A 261 489 223 HOH HOH . C 3 HOH A 262 490 224 HOH HOH . C 3 HOH A 263 491 225 HOH HOH . C 3 HOH A 264 492 226 HOH HOH . C 3 HOH A 265 493 227 HOH HOH . C 3 HOH A 266 494 228 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.073 _atom_site.Cartn_y 6.3 _atom_site.Cartn_z 25.772 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 228 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 511 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #