data_3I1L
#
_model_server_result.job_id            gPgv3TMIR63Xvx4YNyJSng 
_model_server_result.datetime_utc      '2025-07-14 01:31:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i1l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":2001}' 
#
_entry.id    3I1L 
#
_exptl.entry_id    3I1L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              60.052 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.02 
_cell.angle_gamma         90 
_cell.entry_id            3I1L 
_cell.length_a            156.03 
_cell.length_b            103.69 
_cell.length_c            97.07 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3I1L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,Z 1 1,2 
B,C,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,AA,BA 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 L N N 
? 3 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 50 1_555 A SG CYS 43 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 74 A CYS 97 1_555 A SG CYS 122 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 A SG CYS 94 A CYS 117 1_555 A SG CYS 142 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 A SG CYS 181 A CYS 204 1_555 A SG CYS 258 A CYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 189 A CYS 212 1_555 A SG CYS 231 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 A SG CYS 195 A CYS 218 1_555 A SG CYS 202 A CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf7 A SG CYS 289 A CYS 312 1_555 A SG CYS 294 A CYS 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf8 A SG CYS 331 A CYS 354 1_555 A SG CYS 356 A CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 B SG CYS 27 B CYS 50 1_555 B SG CYS 43 B CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 B SG CYS 74 B CYS 97 1_555 B SG CYS 122 B CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 B SG CYS 94 B CYS 117 1_555 B SG CYS 142 B CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf12 B SG CYS 181 B CYS 204 1_555 B SG CYS 258 B CYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 B SG CYS 189 B CYS 212 1_555 B SG CYS 231 B CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf14 B SG CYS 195 B CYS 218 1_555 B SG CYS 202 B CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf15 B SG CYS 289 B CYS 312 1_555 B SG CYS 294 B CYS 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf16 B SG CYS 331 B CYS 354 1_555 B SG CYS 356 B CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf17 C SG CYS 27 C CYS 50 1_555 C SG CYS 43 C CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf18 C SG CYS 74 C CYS 97 1_555 C SG CYS 122 C CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf19 C SG CYS 94 C CYS 117 1_555 C SG CYS 142 C CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf20 C SG CYS 181 C CYS 204 1_555 C SG CYS 258 C CYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf21 C SG CYS 189 C CYS 212 1_555 C SG CYS 231 C CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf22 C SG CYS 195 C CYS 218 1_555 C SG CYS 202 C CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf23 C SG CYS 289 C CYS 312 1_555 C SG CYS 294 C CYS 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf24 C SG CYS 331 C CYS 354 1_555 C SG CYS 356 C CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
covale ? covale1 A ND2 ASN 62 A ASN 85 1_555 J C1 NAG . A NAG 5158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 A ND2 ASN 91 A ASN 114 1_555 F C1 NAG . A NAG 5154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 A ND2 ASN 139 A ASN 162 1_555 G C1 NAG . A NAG 5155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale4 A ND2 ASN 221 A ASN 244 1_555 H C1 NAG . A NAG 5156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale5 A ND2 ASN 298 A ASN 321 1_555 I C1 NAG . A NAG 5157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale6 B ND2 ASN 62 B ASN 85 1_555 Q C1 NAG . B NAG 5158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale7 B ND2 ASN 91 B ASN 114 1_555 M C1 NAG . B NAG 5154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale8 B ND2 ASN 133 B ASN 156 1_555 R C1 NAG . B NAG 5159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale9 B ND2 ASN 139 B ASN 162 1_555 N C1 NAG . B NAG 5155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale10 B ND2 ASN 221 B ASN 244 1_555 O C1 NAG . B NAG 5156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale11 B ND2 ASN 298 B ASN 321 1_555 P C1 NAG . B NAG 5157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale12 C ND2 ASN 62 C ASN 85 1_555 Y C1 NAG . C NAG 5158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale13 C ND2 ASN 91 C ASN 114 1_555 U C1 NAG . C NAG 5154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale14 C ND2 ASN 139 C ASN 162 1_555 V C1 NAG . C NAG 5155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale15 C ND2 ASN 221 C ASN 244 1_555 W C1 NAG . C NAG 5156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale16 C ND2 ASN 298 C ASN 321 1_555 X C1 NAG . C NAG 5157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
#
_chem_comp.formula           'C2 H4 O2' 
_chem_comp.formula_weight    60.052 
_chem_comp.id                ACY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACY doub 1 n n 
C OXT ACY sing 2 n n 
C CH3 ACY sing 3 n n 
OXT HXT ACY sing 4 n n 
CH3 H1 ACY sing 5 n n 
CH3 H2 ACY sing 6 n n 
CH3 H3 ACY sing 7 n n 
#
_atom_sites.entry_id                     3I1L 
_atom_sites.fract_transf_matrix[1][1]    0.006409 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000676 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009644 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010359 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SIO A 1 1001 1001 SIO SIO . 
E 3 ACY A 1 2001 2001 ACY ACY . 
F 4 NAG A 1 5154 5154 NAG NAG . 
G 4 NAG A 1 5155 5155 NAG NAG . 
H 4 NAG A 1 5156 5156 NAG NAG . 
I 4 NAG A 1 5157 5157 NAG NAG . 
J 4 NAG A 1 5158 5158 NAG NAG . 
K 2 SIO B 1 1001 1001 SIO SIO . 
L 3 ACY B 1 2001 2001 ACY ACY . 
M 4 NAG B 1 5154 5154 NAG NAG . 
N 4 NAG B 1 5155 5155 NAG NAG . 
O 4 NAG B 1 5156 5156 NAG NAG . 
P 4 NAG B 1 5157 5157 NAG NAG . 
Q 4 NAG B 1 5158 5158 NAG NAG . 
R 4 NAG B 1 5159 5159 NAG NAG . 
S 2 SIO C 1 1001 1001 SIO SIO . 
T 3 ACY C 1 2001 2001 ACY ACY . 
U 4 NAG C 1 5154 5154 NAG NAG . 
V 4 NAG C 1 5155 5155 NAG NAG . 
W 4 NAG C 1 5156 5156 NAG NAG . 
X 4 NAG C 1 5157 5157 NAG NAG . 
Y 4 NAG C 1 5158 5158 NAG NAG . 
Z 5 HOH A 1 4 4 HOH HOH . 
Z 5 HOH A 2 9 9 HOH HOH . 
Z 5 HOH A 3 11 11 HOH HOH . 
AA 5 HOH B 1 2 2 HOH HOH . 
AA 5 HOH B 2 5 5 HOH HOH . 
AA 5 HOH B 3 8 8 HOH HOH . 
BA 5 HOH C 1 1 1 HOH HOH . 
BA 5 HOH C 2 3 3 HOH HOH . 
BA 5 HOH C 3 6 6 HOH HOH . 
BA 5 HOH C 4 7 7 HOH HOH . 
BA 5 HOH C 5 10 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACY . . . L 3 -23.46 8.793 50.996 1 70.21 ? C ACY 2001 B 1 
HETATM 2 O O ACY . . . L 3 -23.505 9.298 49.851 1 70.16 ? O ACY 2001 B 1 
HETATM 3 O OXT ACY . . . L 3 -23.625 9.435 52.052 1 70.3 ? OXT ACY 2001 B 1 
HETATM 4 C CH3 ACY . . . L 3 -23.187 7.325 51.121 1 70.23 ? CH3 ACY 2001 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           431 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#