data_3I1Y # _model_server_result.job_id SMuWeETbujzjjZ08dqNADQ _model_server_result.datetime_utc '2024-11-05 08:06:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":999}' # _entry.id 3I1Y # _exptl.entry_id 3I1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.396 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3,3-diphenylpropyl)pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I1Y _cell.length_a 92.609 _cell.length_b 92.609 _cell.length_c 244.046 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 92.609 0 122.023 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 N2 O' _chem_comp.formula_weight 316.396 _chem_comp.id 33N _chem_comp.mon_nstd_flag . _chem_comp.name N-(3,3-diphenylpropyl)pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(3,3-Diphenyl-propyl)-nicotinamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C9 33N sing 1 n n C4 C1 33N sing 2 n n C5 C10 33N doub 3 n y C5 C2 33N sing 4 n y C6 C2 33N doub 5 n y C6 C11 33N sing 6 n y C7 C3 33N doub 7 n y C7 C12 33N sing 8 n y C8 C13 33N doub 9 n y C8 C3 33N sing 10 n y C10 C15 33N sing 11 n y C13 C16 33N sing 12 n y C15 C11 33N doub 13 n y C17 O19 33N doub 14 n n C17 C18 33N sing 15 n n C17 N14 33N sing 16 n n C20 C22 33N doub 17 n y C20 C18 33N sing 18 n y C21 C18 33N doub 19 n y C21 N23 33N sing 20 n y C22 C24 33N sing 21 n y C24 N23 33N doub 22 n y N14 C9 33N sing 23 n n C1 C3 33N sing 24 n n C1 C2 33N sing 25 n n C16 C12 33N doub 26 n y C4 H4 33N sing 27 n n C4 H4A 33N sing 28 n n C5 H5 33N sing 29 n n C6 H6 33N sing 30 n n C7 H7 33N sing 31 n n C8 H8 33N sing 32 n n C10 H10 33N sing 33 n n C13 H13 33N sing 34 n n C15 H15 33N sing 35 n n C20 H20 33N sing 36 n n C21 H21 33N sing 37 n n C22 H22 33N sing 38 n n C24 H24 33N sing 39 n n N14 HN14 33N sing 40 n n C9 H9 33N sing 41 n n C9 H9A 33N sing 42 n n C1 H1 33N sing 43 n n C16 H16 33N sing 44 n n C12 H12 33N sing 45 n n C11 H11 33N sing 46 n n # _atom_sites.entry_id 3I1Y _atom_sites.fract_transf_matrix[1][1] 0.010798 _atom_sites.fract_transf_matrix[1][2] 0.006234 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 33N A 1 999 999 33N 33N . C 3 HOH A 1 556 2 HOH TIP . C 3 HOH A 2 557 3 HOH TIP . C 3 HOH A 3 558 4 HOH TIP . C 3 HOH A 4 559 5 HOH TIP . C 3 HOH A 5 560 6 HOH TIP . C 3 HOH A 6 561 8 HOH TIP . C 3 HOH A 7 562 9 HOH TIP . C 3 HOH A 8 563 10 HOH TIP . C 3 HOH A 9 564 12 HOH TIP . C 3 HOH A 10 565 13 HOH TIP . C 3 HOH A 11 566 14 HOH TIP . C 3 HOH A 12 567 15 HOH TIP . C 3 HOH A 13 568 17 HOH TIP . C 3 HOH A 14 569 18 HOH TIP . C 3 HOH A 15 570 19 HOH TIP . C 3 HOH A 16 571 20 HOH TIP . C 3 HOH A 17 572 21 HOH TIP . C 3 HOH A 18 573 22 HOH TIP . C 3 HOH A 19 574 23 HOH TIP . C 3 HOH A 20 575 24 HOH TIP . C 3 HOH A 21 576 25 HOH TIP . C 3 HOH A 22 577 26 HOH TIP . C 3 HOH A 23 578 27 HOH TIP . C 3 HOH A 24 579 28 HOH TIP . C 3 HOH A 25 580 37 HOH TIP . C 3 HOH A 26 581 40 HOH TIP . C 3 HOH A 27 582 43 HOH TIP . C 3 HOH A 28 583 45 HOH TIP . C 3 HOH A 29 584 47 HOH TIP . C 3 HOH A 30 585 48 HOH TIP . C 3 HOH A 31 586 50 HOH TIP . C 3 HOH A 32 587 52 HOH TIP . C 3 HOH A 33 588 53 HOH TIP . C 3 HOH A 34 589 55 HOH TIP . C 3 HOH A 35 590 56 HOH TIP . C 3 HOH A 36 591 57 HOH TIP . C 3 HOH A 37 592 58 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 33N . . . B 2 74.782 -9.029 67.983 1 40.26 ? C4 33N 999 A 1 HETATM 2 C C5 33N . . . B 2 76.229 -11.653 68.525 1 48.74 ? C5 33N 999 A 1 HETATM 3 C C6 33N . . . B 2 73.978 -12.421 68.837 1 44.12 ? C6 33N 999 A 1 HETATM 4 C C7 33N . . . B 2 74.901 -10.169 71.591 1 44 ? C7 33N 999 A 1 HETATM 5 C C8 33N . . . B 2 75.846 -8.324 70.383 1 47.66 ? C8 33N 999 A 1 HETATM 6 C C10 33N . . . B 2 76.631 -12.947 68.243 1 51.26 ? C10 33N 999 A 1 HETATM 7 C C13 33N . . . B 2 76.425 -7.859 71.552 1 44.75 ? C13 33N 999 A 1 HETATM 8 C C15 33N . . . B 2 75.706 -13.977 68.258 1 52.05 ? C15 33N 999 A 1 HETATM 9 C C17 33N . . . B 2 75.151 -8.741 64.526 1 42.7 ? C17 33N 999 A 1 HETATM 10 C C20 33N . . . B 2 75.879 -7.816 62.321 1 45.98 ? C20 33N 999 A 1 HETATM 11 C C21 33N . . . B 2 74.251 -6.597 63.611 1 46.53 ? C21 33N 999 A 1 HETATM 12 C C22 33N . . . B 2 75.787 -6.822 61.364 1 46.36 ? C22 33N 999 A 1 HETATM 13 C C24 33N . . . B 2 74.929 -5.758 61.577 1 47.94 ? C24 33N 999 A 1 HETATM 14 O O19 33N . . . B 2 75.901 -9.688 64.406 1 45.82 ? O19 33N 999 A 1 HETATM 15 C C18 33N . . . B 2 75.094 -7.701 63.475 1 42.84 ? C18 33N 999 A 1 HETATM 16 N N23 33N . . . B 2 74.197 -5.675 62.672 1 45.93 ? N23 33N 999 A 1 HETATM 17 N N14 33N . . . B 2 74.374 -8.644 65.618 1 42.1 ? N14 33N 999 A 1 HETATM 18 C C9 33N . . . B 2 74.434 -9.682 66.646 1 43.38 ? C9 33N 999 A 1 HETATM 19 C C1 33N . . . B 2 74.445 -9.984 69.131 1 41.46 ? C1 33N 999 A 1 HETATM 20 C C3 33N . . . B 2 75.079 -9.478 70.404 1 42.82 ? C3 33N 999 A 1 HETATM 21 C C16 33N . . . B 2 76.247 -8.548 72.739 1 42.18 ? C16 33N 999 A 1 HETATM 22 C C12 33N . . . B 2 75.482 -9.703 72.758 1 44.9 ? C12 33N 999 A 1 HETATM 23 C C2 33N . . . B 2 74.902 -11.389 68.82 1 48.67 ? C2 33N 999 A 1 HETATM 24 C C11 33N . . . B 2 74.38 -13.714 68.557 1 43.33 ? C11 33N 999 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #