data_3I28 # _model_server_result.job_id hzKQ2-qcguJqDyH9-zeFTg _model_server_result.datetime_utc '2024-11-27 04:01:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":999}' # _entry.id 3I28 # _exptl.entry_id 3I28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 436.499 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-cyano-N-{(3S)-3-(4-fluorophenyl)-3-[4-(methylsulfonyl)phenyl]propyl}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I28 _cell.length_a 92.41 _cell.length_b 92.41 _cell.length_c 243.983 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 92.41 0 121.9915 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H21 F N2 O3 S' _chem_comp.formula_weight 436.499 _chem_comp.id 34N _chem_comp.mon_nstd_flag . _chem_comp.name 4-cyano-N-{(3S)-3-(4-fluorophenyl)-3-[4-(methylsulfonyl)phenyl]propyl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 34N doub 1 n y C5 C10 34N sing 2 n y C5 S2 34N sing 3 n n C6 C7 34N sing 4 n y C7 C8 34N doub 5 n y C8 C11 34N sing 6 n n C8 C9 34N sing 7 n y C10 C9 34N doub 8 n y C13 C12 34N sing 9 n n C13 N14 34N sing 10 n n C15 C17 34N sing 11 n n C15 N14 34N sing 12 n n C15 O16 34N doub 13 n n C17 C22 34N doub 14 n y C17 C18 34N sing 15 n y C20 C21 34N doub 16 n y C20 C23 34N sing 17 n n C20 C19 34N sing 18 n y C21 C22 34N sing 19 n y C26 C27 34N doub 20 n y C26 C25 34N sing 21 n y C28 F29 34N sing 22 n n C28 C27 34N sing 23 n y C28 C30 34N doub 24 n y C30 C31 34N sing 25 n y C31 C25 34N doub 26 n y C25 C11 34N sing 27 n n C11 C12 34N sing 28 n n S2 O3 34N doub 29 n n S2 O4 34N doub 30 n n S2 C1 34N sing 31 n n C23 N24 34N trip 32 n n C19 C18 34N doub 33 n y C6 H6 34N sing 34 n n C7 H7 34N sing 35 n n C10 H10 34N sing 36 n n C13 H13 34N sing 37 n n C13 H13A 34N sing 38 n n C21 H21 34N sing 39 n n C22 H22 34N sing 40 n n C26 H26 34N sing 41 n n C27 H27 34N sing 42 n n C30 H30 34N sing 43 n n C31 H31 34N sing 44 n n C11 H11 34N sing 45 n n C9 H9 34N sing 46 n n C1 H1 34N sing 47 n n C1 H1A 34N sing 48 n n C1 H1B 34N sing 49 n n C12 H12 34N sing 50 n n C12 H12A 34N sing 51 n n N14 HN14 34N sing 52 n n C19 H19 34N sing 53 n n C18 H18 34N sing 54 n n # _atom_sites.entry_id 3I28 _atom_sites.fract_transf_matrix[1][1] 0.010821 _atom_sites.fract_transf_matrix[1][2] 0.006248 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 34N A 1 999 999 34N 34N . C 3 HOH A 1 556 2 HOH TIP . C 3 HOH A 2 557 3 HOH TIP . C 3 HOH A 3 558 4 HOH TIP . C 3 HOH A 4 559 5 HOH TIP . C 3 HOH A 5 560 6 HOH TIP . C 3 HOH A 6 561 7 HOH TIP . C 3 HOH A 7 562 8 HOH TIP . C 3 HOH A 8 563 9 HOH TIP . C 3 HOH A 9 564 10 HOH TIP . C 3 HOH A 10 565 11 HOH TIP . C 3 HOH A 11 566 12 HOH TIP . C 3 HOH A 12 567 13 HOH TIP . C 3 HOH A 13 568 14 HOH TIP . C 3 HOH A 14 569 15 HOH TIP . C 3 HOH A 15 570 16 HOH TIP . C 3 HOH A 16 571 17 HOH TIP . C 3 HOH A 17 572 18 HOH TIP . C 3 HOH A 18 573 19 HOH TIP . C 3 HOH A 19 574 20 HOH TIP . C 3 HOH A 20 575 21 HOH TIP . C 3 HOH A 21 576 22 HOH TIP . C 3 HOH A 22 577 23 HOH TIP . C 3 HOH A 23 578 24 HOH TIP . C 3 HOH A 24 579 25 HOH TIP . C 3 HOH A 25 580 26 HOH TIP . C 3 HOH A 26 581 27 HOH TIP . C 3 HOH A 27 582 28 HOH TIP . C 3 HOH A 28 583 29 HOH TIP . C 3 HOH A 29 584 30 HOH TIP . C 3 HOH A 30 585 31 HOH TIP . C 3 HOH A 31 586 32 HOH TIP . C 3 HOH A 32 587 33 HOH TIP . C 3 HOH A 33 588 34 HOH TIP . C 3 HOH A 34 589 35 HOH TIP . C 3 HOH A 35 590 36 HOH TIP . C 3 HOH A 36 591 37 HOH TIP . C 3 HOH A 37 592 38 HOH TIP . C 3 HOH A 38 593 39 HOH TIP . C 3 HOH A 39 594 40 HOH TIP . C 3 HOH A 40 595 41 HOH TIP . C 3 HOH A 41 596 42 HOH TIP . C 3 HOH A 42 597 43 HOH TIP . C 3 HOH A 43 598 44 HOH TIP . C 3 HOH A 44 599 45 HOH TIP . C 3 HOH A 45 600 46 HOH TIP . C 3 HOH A 46 601 47 HOH TIP . C 3 HOH A 47 602 48 HOH TIP . C 3 HOH A 48 603 49 HOH TIP . C 3 HOH A 49 604 50 HOH TIP . C 3 HOH A 50 605 51 HOH TIP . C 3 HOH A 51 606 52 HOH TIP . C 3 HOH A 52 607 54 HOH TIP . C 3 HOH A 53 608 56 HOH TIP . C 3 HOH A 54 609 59 HOH TIP . C 3 HOH A 55 610 60 HOH TIP . C 3 HOH A 56 611 61 HOH TIP . C 3 HOH A 57 612 62 HOH TIP . C 3 HOH A 58 613 63 HOH TIP . C 3 HOH A 59 614 64 HOH TIP . C 3 HOH A 60 615 65 HOH TIP . C 3 HOH A 61 616 66 HOH TIP . C 3 HOH A 62 617 68 HOH TIP . C 3 HOH A 63 618 69 HOH TIP . C 3 HOH A 64 619 70 HOH TIP . C 3 HOH A 65 620 72 HOH TIP . C 3 HOH A 66 621 73 HOH TIP . C 3 HOH A 67 622 74 HOH TIP . C 3 HOH A 68 623 75 HOH TIP . C 3 HOH A 69 624 77 HOH TIP . C 3 HOH A 70 625 78 HOH TIP . C 3 HOH A 71 626 81 HOH TIP . C 3 HOH A 72 627 83 HOH TIP . C 3 HOH A 73 628 84 HOH TIP . C 3 HOH A 74 629 85 HOH TIP . C 3 HOH A 75 630 87 HOH TIP . C 3 HOH A 76 631 89 HOH TIP . C 3 HOH A 77 632 90 HOH TIP . C 3 HOH A 78 633 93 HOH TIP . C 3 HOH A 79 634 94 HOH TIP . C 3 HOH A 80 635 95 HOH TIP . C 3 HOH A 81 636 97 HOH TIP . C 3 HOH A 82 637 101 HOH TIP . C 3 HOH A 83 638 102 HOH TIP . C 3 HOH A 84 639 103 HOH TIP . C 3 HOH A 85 640 104 HOH TIP . C 3 HOH A 86 641 105 HOH TIP . C 3 HOH A 87 642 107 HOH TIP . C 3 HOH A 88 643 108 HOH TIP . C 3 HOH A 89 644 109 HOH TIP . C 3 HOH A 90 645 111 HOH TIP . C 3 HOH A 91 646 112 HOH TIP . C 3 HOH A 92 647 118 HOH TIP . C 3 HOH A 93 648 125 HOH TIP . C 3 HOH A 94 649 126 HOH TIP . C 3 HOH A 95 650 127 HOH TIP . C 3 HOH A 96 651 133 HOH TIP . C 3 HOH A 97 652 138 HOH TIP . C 3 HOH A 98 653 144 HOH TIP . C 3 HOH A 99 654 145 HOH TIP . C 3 HOH A 100 655 146 HOH TIP . C 3 HOH A 101 656 147 HOH TIP . C 3 HOH A 102 657 148 HOH TIP . C 3 HOH A 103 658 149 HOH TIP . C 3 HOH A 104 659 150 HOH TIP . C 3 HOH A 105 660 151 HOH TIP . C 3 HOH A 106 661 152 HOH TIP . C 3 HOH A 107 662 153 HOH TIP . C 3 HOH A 108 663 154 HOH TIP . C 3 HOH A 109 664 155 HOH TIP . C 3 HOH A 110 665 156 HOH TIP . C 3 HOH A 111 666 157 HOH TIP . C 3 HOH A 112 667 158 HOH TIP . C 3 HOH A 113 668 159 HOH TIP . C 3 HOH A 114 669 160 HOH TIP . C 3 HOH A 115 670 161 HOH TIP . C 3 HOH A 116 671 162 HOH TIP . C 3 HOH A 117 672 163 HOH TIP . C 3 HOH A 118 673 164 HOH TIP . C 3 HOH A 119 674 165 HOH TIP . C 3 HOH A 120 675 166 HOH TIP . C 3 HOH A 121 676 167 HOH TIP . C 3 HOH A 122 677 168 HOH TIP . C 3 HOH A 123 678 169 HOH TIP . C 3 HOH A 124 679 170 HOH TIP . C 3 HOH A 125 680 171 HOH TIP . C 3 HOH A 126 681 172 HOH TIP . C 3 HOH A 127 682 173 HOH TIP . C 3 HOH A 128 683 174 HOH TIP . C 3 HOH A 129 684 175 HOH TIP . C 3 HOH A 130 685 176 HOH TIP . C 3 HOH A 131 686 177 HOH TIP . C 3 HOH A 132 687 178 HOH TIP . C 3 HOH A 133 688 179 HOH TIP . C 3 HOH A 134 689 180 HOH TIP . C 3 HOH A 135 690 181 HOH TIP . C 3 HOH A 136 691 182 HOH TIP . C 3 HOH A 137 692 183 HOH TIP . C 3 HOH A 138 693 184 HOH TIP . C 3 HOH A 139 694 185 HOH TIP . C 3 HOH A 140 695 186 HOH TIP . C 3 HOH A 141 696 187 HOH TIP . C 3 HOH A 142 697 188 HOH TIP . C 3 HOH A 143 698 189 HOH TIP . C 3 HOH A 144 699 190 HOH TIP . C 3 HOH A 145 700 191 HOH TIP . C 3 HOH A 146 701 192 HOH TIP . C 3 HOH A 147 702 193 HOH TIP . C 3 HOH A 148 703 194 HOH TIP . C 3 HOH A 149 704 195 HOH TIP . C 3 HOH A 150 705 196 HOH TIP . C 3 HOH A 151 706 197 HOH TIP . C 3 HOH A 152 707 198 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 34N . . . B 2 76.55 -8.571 72.642 1 33.75 ? C5 34N 999 A 1 HETATM 2 C C6 34N . . . B 2 76.693 -7.88 71.449 1 32.44 ? C6 34N 999 A 1 HETATM 3 C C7 34N . . . B 2 76.005 -8.323 70.322 1 30.51 ? C7 34N 999 A 1 HETATM 4 C C8 34N . . . B 2 75.187 -9.453 70.382 1 31.78 ? C8 34N 999 A 1 HETATM 5 C C10 34N . . . B 2 75.732 -9.69 72.706 1 33.16 ? C10 34N 999 A 1 HETATM 6 C C13 34N . . . B 2 73.933 -9.737 66.759 1 32.09 ? C13 34N 999 A 1 HETATM 7 C C15 34N . . . B 2 74.954 -8.875 64.72 1 24.35 ? C15 34N 999 A 1 HETATM 8 C C17 34N . . . B 2 75.033 -7.834 63.664 1 31.57 ? C17 34N 999 A 1 HETATM 9 C C20 34N . . . B 2 75.194 -5.898 61.694 1 45.06 ? C20 34N 999 A 1 HETATM 10 C C21 34N . . . B 2 76.19 -6.862 61.821 1 55.25 ? C21 34N 999 A 1 HETATM 11 C C22 34N . . . B 2 76.114 -7.818 62.793 1 46.52 ? C22 34N 999 A 1 HETATM 12 C C26 34N . . . B 2 75.792 -12.023 68.771 1 35.6 ? C26 34N 999 A 1 HETATM 13 C C28 34N . . . B 2 74.747 -14.177 68.721 1 40.06 ? C28 34N 999 A 1 HETATM 14 F F29 34N . . . B 2 74.82 -15.524 68.592 1 35.64 ? F29 34N 999 A 1 HETATM 15 C C27 34N . . . B 2 75.89 -13.395 68.636 1 36.27 ? C27 34N 999 A 1 HETATM 16 C C30 34N . . . B 2 73.513 -13.584 68.929 1 33.72 ? C30 34N 999 A 1 HETATM 17 C C31 34N . . . B 2 73.413 -12.221 69.074 1 33.71 ? C31 34N 999 A 1 HETATM 18 C C25 34N . . . B 2 74.555 -11.439 68.989 1 39.18 ? C25 34N 999 A 1 HETATM 19 C C11 34N . . . B 2 74.4 -9.95 69.171 1 22.84 ? C11 34N 999 A 1 HETATM 20 C C9 34N . . . B 2 75.048 -10.126 71.582 1 33.94 ? C9 34N 999 A 1 HETATM 21 S S2 34N . . . B 2 77.408 -8.052 74.094 1 38.87 ? S2 34N 999 A 1 HETATM 22 O O3 34N . . . B 2 76.543 -8.395 75.165 1 42.71 ? O3 34N 999 A 1 HETATM 23 O O4 34N . . . B 2 77.76 -6.684 73.895 1 46.31 ? O4 34N 999 A 1 HETATM 24 C C1 34N . . . B 2 78.876 -9.117 74.03 1 38.45 ? C1 34N 999 A 1 HETATM 25 C C12 34N . . . B 2 74.789 -9.198 67.904 1 28.3 ? C12 34N 999 A 1 HETATM 26 N N14 34N . . . B 2 74.029 -8.736 65.697 1 28.98 ? N14 34N 999 A 1 HETATM 27 O O16 34N . . . B 2 75.714 -9.826 64.708 1 32.07 ? O16 34N 999 A 1 HETATM 28 C C23 34N . . . B 2 75.338 -4.911 60.668 1 71.25 ? C23 34N 999 A 1 HETATM 29 N N24 34N . . . B 2 75.419 -4.113 59.864 1 60.49 ? N24 34N 999 A 1 HETATM 30 C C19 34N . . . B 2 74.099 -5.885 62.57 1 44.06 ? C19 34N 999 A 1 HETATM 31 C C18 34N . . . B 2 74.023 -6.864 63.554 1 42.2 ? C18 34N 999 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 1214 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 31 #