data_3I2W # _model_server_result.job_id 3F5VOyy0fFLvDxC43XSnzQ _model_server_result.datetime_utc '2025-03-06 23:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2}' # _entry.id 3I2W # _exptl.entry_id 3I2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3I2W _cell.length_a 62.595 _cell.length_b 85.525 _cell.length_c 192.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 83 A HIS 96 1_555 A N MSE 84 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale2 A C MSE 84 A MSE 97 1_555 A N LYS 85 A LYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C LEU 110 A LEU 123 1_555 A N MSE 111 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C MSE 111 A MSE 124 1_555 A N GLN 112 A GLN 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale5 A C ASP 210 A ASP 223 1_555 A N MSE 211 A MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale6 A C MSE 211 A MSE 224 1_555 A N THR 212 A THR 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C ASN 278 A ASN 291 1_555 A N MSE 279 A MSE 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C MSE 279 A MSE 292 1_555 A N ALA 280 A ALA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C ALA 280 A ALA 293 1_555 A N MSE 281 A MSE 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 281 A MSE 294 1_555 A N ASN 282 A ASN 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 B C HIS 83 B HIS 96 1_555 B N MSE 84 B MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale12 B C MSE 84 B MSE 97 1_555 B N LYS 85 B LYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 B C LEU 110 B LEU 123 1_555 B N MSE 111 B MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale14 B C MSE 111 B MSE 124 1_555 B N GLN 112 B GLN 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale15 B C LYS 174 B LYS 187 1_555 B N MSE 175 B MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale16 B C MSE 175 B MSE 188 1_555 B N HIS 176 B HIS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale17 B C ASP 210 B ASP 223 1_555 B N MSE 211 B MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale18 B C MSE 211 B MSE 224 1_555 B N THR 212 B THR 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale19 B C ASN 278 B ASN 291 1_555 B N MSE 279 B MSE 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale20 B C MSE 279 B MSE 292 1_555 B N ALA 280 B ALA 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale21 B C ALA 280 B ALA 293 1_555 B N MSE 281 B MSE 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale22 B C MSE 281 B MSE 294 1_555 B N ASN 282 B ASN 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A O ILE 56 A ILE 69 1_555 D NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc2 A O GLU 57 A GLU 70 1_555 D NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc3 A O GLY 59 A GLY 72 1_555 D NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc4 A O GLU 61 A GLU 74 1_555 D NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 A OE2 GLU 66 A GLU 79 1_555 D NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc6 B O ILE 56 B ILE 69 1_555 G NA NA . B NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc7 B O GLU 57 B GLU 70 1_555 G NA NA . B NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc8 B O GLY 59 B GLY 72 1_555 G NA NA . B NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc9 B O GLU 61 B GLU 74 1_555 G NA NA . B NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc10 B OE2 GLU 66 B GLU 79 1_555 G NA NA . B NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc11 G NA NA . B NA 304 1_555 I O HOH . B HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3I2W _atom_sites.fract_transf_matrix[1][1] 0.015976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1 1 GOL GOL . D 3 NA A 1 304 1 NA NA . E 3 NA A 1 3 3 NA NA . F 2 GOL B 1 2 2 GOL GOL . G 3 NA B 1 304 2 NA NA . H 4 HOH A 1 6 6 HOH HOH . H 4 HOH A 2 8 8 HOH HOH . H 4 HOH A 3 9 9 HOH HOH . H 4 HOH A 4 10 10 HOH HOH . H 4 HOH A 5 11 11 HOH HOH . H 4 HOH A 6 12 12 HOH HOH . H 4 HOH A 7 13 13 HOH HOH . H 4 HOH A 8 305 15 HOH HOH . H 4 HOH A 9 306 17 HOH HOH . H 4 HOH A 10 307 20 HOH HOH . H 4 HOH A 11 308 21 HOH HOH . H 4 HOH A 12 309 22 HOH HOH . H 4 HOH A 13 310 24 HOH HOH . H 4 HOH A 14 311 26 HOH HOH . H 4 HOH A 15 312 27 HOH HOH . H 4 HOH A 16 313 28 HOH HOH . H 4 HOH A 17 314 30 HOH HOH . H 4 HOH A 18 315 32 HOH HOH . H 4 HOH A 19 316 34 HOH HOH . H 4 HOH A 20 317 35 HOH HOH . H 4 HOH A 21 318 38 HOH HOH . H 4 HOH A 22 319 39 HOH HOH . H 4 HOH A 23 320 41 HOH HOH . H 4 HOH A 24 321 47 HOH HOH . H 4 HOH A 25 322 48 HOH HOH . H 4 HOH A 26 323 53 HOH HOH . H 4 HOH A 27 324 55 HOH HOH . H 4 HOH A 28 325 56 HOH HOH . H 4 HOH A 29 326 57 HOH HOH . H 4 HOH A 30 327 58 HOH HOH . H 4 HOH A 31 328 59 HOH HOH . H 4 HOH A 32 329 60 HOH HOH . H 4 HOH A 33 330 61 HOH HOH . H 4 HOH A 34 331 62 HOH HOH . H 4 HOH A 35 332 63 HOH HOH . H 4 HOH A 36 333 64 HOH HOH . H 4 HOH A 37 334 66 HOH HOH . H 4 HOH A 38 335 74 HOH HOH . H 4 HOH A 39 336 76 HOH HOH . H 4 HOH A 40 337 77 HOH HOH . H 4 HOH A 41 338 79 HOH HOH . H 4 HOH A 42 339 81 HOH HOH . H 4 HOH A 43 340 82 HOH HOH . H 4 HOH A 44 341 84 HOH HOH . H 4 HOH A 45 342 85 HOH HOH . H 4 HOH A 46 343 86 HOH HOH . H 4 HOH A 47 344 92 HOH HOH . H 4 HOH A 48 345 94 HOH HOH . H 4 HOH A 49 346 99 HOH HOH . H 4 HOH A 50 347 101 HOH HOH . H 4 HOH A 51 348 104 HOH HOH . I 4 HOH B 1 1 1 HOH HOH . I 4 HOH B 2 3 3 HOH HOH . I 4 HOH B 3 4 4 HOH HOH . I 4 HOH B 4 5 5 HOH HOH . I 4 HOH B 5 7 7 HOH HOH . I 4 HOH B 6 305 2 HOH HOH . I 4 HOH B 7 306 14 HOH HOH . I 4 HOH B 8 307 16 HOH HOH . I 4 HOH B 9 308 18 HOH HOH . I 4 HOH B 10 309 19 HOH HOH . I 4 HOH B 11 310 23 HOH HOH . I 4 HOH B 12 311 25 HOH HOH . I 4 HOH B 13 312 29 HOH HOH . I 4 HOH B 14 313 31 HOH HOH . I 4 HOH B 15 314 33 HOH HOH . I 4 HOH B 16 315 36 HOH HOH . I 4 HOH B 17 316 37 HOH HOH . I 4 HOH B 18 317 40 HOH HOH . I 4 HOH B 19 318 42 HOH HOH . I 4 HOH B 20 319 43 HOH HOH . I 4 HOH B 21 320 44 HOH HOH . I 4 HOH B 22 321 45 HOH HOH . I 4 HOH B 23 322 46 HOH HOH . I 4 HOH B 24 323 49 HOH HOH . I 4 HOH B 25 324 50 HOH HOH . I 4 HOH B 26 325 51 HOH HOH . I 4 HOH B 27 326 52 HOH HOH . I 4 HOH B 28 327 54 HOH HOH . I 4 HOH B 29 328 65 HOH HOH . I 4 HOH B 30 329 67 HOH HOH . I 4 HOH B 31 330 68 HOH HOH . I 4 HOH B 32 331 69 HOH HOH . I 4 HOH B 33 332 70 HOH HOH . I 4 HOH B 34 333 71 HOH HOH . I 4 HOH B 35 334 72 HOH HOH . I 4 HOH B 36 335 73 HOH HOH . I 4 HOH B 37 336 75 HOH HOH . I 4 HOH B 38 337 78 HOH HOH . I 4 HOH B 39 338 80 HOH HOH . I 4 HOH B 40 339 83 HOH HOH . I 4 HOH B 41 340 87 HOH HOH . I 4 HOH B 42 341 88 HOH HOH . I 4 HOH B 43 342 89 HOH HOH . I 4 HOH B 44 343 90 HOH HOH . I 4 HOH B 45 344 91 HOH HOH . I 4 HOH B 46 345 93 HOH HOH . I 4 HOH B 47 346 95 HOH HOH . I 4 HOH B 48 347 96 HOH HOH . I 4 HOH B 49 348 97 HOH HOH . I 4 HOH B 50 349 98 HOH HOH . I 4 HOH B 51 350 100 HOH HOH . I 4 HOH B 52 351 102 HOH HOH . I 4 HOH B 53 352 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 -25.149 -51.161 17.035 1 32.51 ? C1 GOL 2 B 1 HETATM 2 O O1 GOL . . . F 2 -25.903 -50.419 16.1 1 35.68 ? O1 GOL 2 B 1 HETATM 3 C C2 GOL . . . F 2 -24.733 -52.444 16.355 1 32.13 ? C2 GOL 2 B 1 HETATM 4 O O2 GOL . . . F 2 -24.607 -52.215 14.938 1 27.55 ? O2 GOL 2 B 1 HETATM 5 C C3 GOL . . . F 2 -25.865 -53.387 16.743 1 32.77 ? C3 GOL 2 B 1 HETATM 6 O O3 GOL . . . F 2 -25.618 -54.072 17.962 1 32.97 ? O3 GOL 2 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #