data_3I31 # _model_server_result.job_id v8jYT6MxrgFalfvo18ODRQ _model_server_result.datetime_utc '2024-10-19 08:21:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3}' # _entry.id 3I31 # _exptl.entry_id 3I31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3I31 _cell.length_a 37.516 _cell.length_b 37.516 _cell.length_c 136.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B ZN ZN . A ZN 1 1_555 A OE2 GLU 46 A GLU 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc2 B ZN ZN . A ZN 1 1_555 G O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 C NA NA . A NA 2 1_555 A OE1 GLU 11 A GLU 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc4 D NA NA . A NA 3 1_555 A OE1 GLU 44 A GLU 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc5 D NA NA . A NA 3 1_555 A OE2 GLU 44 A GLU 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc6 E NA NA . A NA 4 1_555 G O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3I31 _atom_sites.fract_transf_matrix[1][1] 0.026655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1 1 ZN ZN . C 3 NA A 1 2 2 NA NA . D 3 NA A 1 3 3 NA NA . E 3 NA A 1 4 4 NA NA . F 4 TRS A 1 511 1 TRS TRS . G 5 HOH A 1 5 5 HOH HOH . G 5 HOH A 2 6 6 HOH HOH . G 5 HOH A 3 7 7 HOH HOH . G 5 HOH A 4 8 8 HOH HOH . G 5 HOH A 5 9 9 HOH HOH . G 5 HOH A 6 10 10 HOH HOH . G 5 HOH A 7 11 11 HOH HOH . G 5 HOH A 8 12 12 HOH HOH . G 5 HOH A 9 13 13 HOH HOH . G 5 HOH A 10 14 14 HOH HOH . G 5 HOH A 11 15 15 HOH HOH . G 5 HOH A 12 16 16 HOH HOH . G 5 HOH A 13 17 17 HOH HOH . G 5 HOH A 14 18 18 HOH HOH . G 5 HOH A 15 19 19 HOH HOH . G 5 HOH A 16 20 20 HOH HOH . G 5 HOH A 17 21 21 HOH HOH . G 5 HOH A 18 22 22 HOH HOH . G 5 HOH A 19 23 23 HOH HOH . G 5 HOH A 20 24 24 HOH HOH . G 5 HOH A 21 25 25 HOH HOH . G 5 HOH A 22 26 26 HOH HOH . G 5 HOH A 23 27 27 HOH HOH . G 5 HOH A 24 28 28 HOH HOH . G 5 HOH A 25 29 29 HOH HOH . G 5 HOH A 26 30 30 HOH HOH . G 5 HOH A 27 31 31 HOH HOH . G 5 HOH A 28 32 32 HOH HOH . G 5 HOH A 29 33 33 HOH HOH . G 5 HOH A 30 34 34 HOH HOH . G 5 HOH A 31 35 35 HOH HOH . G 5 HOH A 32 36 36 HOH HOH . G 5 HOH A 33 37 37 HOH HOH . G 5 HOH A 34 38 38 HOH HOH . G 5 HOH A 35 39 39 HOH HOH . G 5 HOH A 36 512 1 HOH HOH . G 5 HOH A 37 513 2 HOH HOH . G 5 HOH A 38 514 3 HOH HOH . G 5 HOH A 39 515 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.766 _atom_site.Cartn_y 17.269 _atom_site.Cartn_z 6.878 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 3 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #