data_3I3M
#
_model_server_result.job_id            YOFsWNqNHxnjIaMkyn9l9w 
_model_server_result.datetime_utc      '2024-11-30 06:05:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i3m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    3I3M 
#
_exptl.entry_id    3I3M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3I3M 
_cell.length_a            41.444 
_cell.length_b            41.444 
_cell.length_c            116.709 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3I3M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' DT 1 B DT 501 1_555 B P ME6 2 B ME6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? 
covale ? covale2 B O3' ME6 2 B ME6 502 1_555 B P DT 3 B DT 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3I3M 
_atom_sites.fract_transf_matrix[1][1]    0.024129 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024129 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008568 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 AKG A 1 400 400 AKG AKG . 
D 4 MN A 1 300 300 MN MN . 
E 5 HOH A 1 601 601 HOH HOH . 
E 5 HOH A 2 602 602 HOH HOH . 
E 5 HOH A 3 603 603 HOH HOH . 
E 5 HOH A 4 604 604 HOH HOH . 
E 5 HOH A 5 605 605 HOH HOH . 
E 5 HOH A 6 606 606 HOH HOH . 
E 5 HOH A 7 607 607 HOH HOH . 
E 5 HOH A 8 608 608 HOH HOH . 
E 5 HOH A 9 609 609 HOH HOH . 
E 5 HOH A 10 610 610 HOH HOH . 
E 5 HOH A 11 611 611 HOH HOH . 
E 5 HOH A 12 612 612 HOH HOH . 
E 5 HOH A 13 613 613 HOH HOH . 
E 5 HOH A 14 614 614 HOH HOH . 
E 5 HOH A 15 615 615 HOH HOH . 
E 5 HOH A 16 616 616 HOH HOH . 
E 5 HOH A 17 617 617 HOH HOH . 
E 5 HOH A 18 618 618 HOH HOH . 
E 5 HOH A 19 619 619 HOH HOH . 
E 5 HOH A 20 620 620 HOH HOH . 
E 5 HOH A 21 621 621 HOH HOH . 
E 5 HOH A 22 622 622 HOH HOH . 
E 5 HOH A 23 623 623 HOH HOH . 
E 5 HOH A 24 625 625 HOH HOH . 
E 5 HOH A 25 626 626 HOH HOH . 
E 5 HOH A 26 627 627 HOH HOH . 
E 5 HOH A 27 628 628 HOH HOH . 
E 5 HOH A 28 629 629 HOH HOH . 
E 5 HOH A 29 630 630 HOH HOH . 
E 5 HOH A 30 631 631 HOH HOH . 
E 5 HOH A 31 632 632 HOH HOH . 
E 5 HOH A 32 633 633 HOH HOH . 
E 5 HOH A 33 634 634 HOH HOH . 
E 5 HOH A 34 635 635 HOH HOH . 
E 5 HOH A 35 636 636 HOH HOH . 
E 5 HOH A 36 637 637 HOH HOH . 
E 5 HOH A 37 638 638 HOH HOH . 
E 5 HOH A 38 639 639 HOH HOH . 
E 5 HOH A 39 640 640 HOH HOH . 
E 5 HOH A 40 641 641 HOH HOH . 
E 5 HOH A 41 642 642 HOH HOH . 
E 5 HOH A 42 643 643 HOH HOH . 
E 5 HOH A 43 644 644 HOH HOH . 
E 5 HOH A 44 645 645 HOH HOH . 
E 5 HOH A 45 647 647 HOH HOH . 
E 5 HOH A 46 648 648 HOH HOH . 
E 5 HOH A 47 649 649 HOH HOH . 
E 5 HOH A 48 650 650 HOH HOH . 
E 5 HOH A 49 651 651 HOH HOH . 
E 5 HOH A 50 652 652 HOH HOH . 
E 5 HOH A 51 653 653 HOH HOH . 
E 5 HOH A 52 654 654 HOH HOH . 
E 5 HOH A 53 655 655 HOH HOH . 
E 5 HOH A 54 656 656 HOH HOH . 
E 5 HOH A 55 658 658 HOH HOH . 
E 5 HOH A 56 659 659 HOH HOH . 
E 5 HOH A 57 660 660 HOH HOH . 
E 5 HOH A 58 661 661 HOH HOH . 
E 5 HOH A 59 662 662 HOH HOH . 
E 5 HOH A 60 663 663 HOH HOH . 
E 5 HOH A 61 664 664 HOH HOH . 
E 5 HOH A 62 665 665 HOH HOH . 
E 5 HOH A 63 666 666 HOH HOH . 
E 5 HOH A 64 667 667 HOH HOH . 
E 5 HOH A 65 668 668 HOH HOH . 
E 5 HOH A 66 669 669 HOH HOH . 
E 5 HOH A 67 670 670 HOH HOH . 
E 5 HOH A 68 671 671 HOH HOH . 
E 5 HOH A 69 672 672 HOH HOH . 
E 5 HOH A 70 673 673 HOH HOH . 
E 5 HOH A 71 674 674 HOH HOH . 
E 5 HOH A 72 675 675 HOH HOH . 
E 5 HOH A 73 676 676 HOH HOH . 
E 5 HOH A 74 677 677 HOH HOH . 
E 5 HOH A 75 678 678 HOH HOH . 
E 5 HOH A 76 679 679 HOH HOH . 
E 5 HOH A 77 680 680 HOH HOH . 
E 5 HOH A 78 681 681 HOH HOH . 
E 5 HOH A 79 683 683 HOH HOH . 
E 5 HOH A 80 684 684 HOH HOH . 
E 5 HOH A 81 685 685 HOH HOH . 
E 5 HOH A 82 686 686 HOH HOH . 
E 5 HOH A 83 687 687 HOH HOH . 
E 5 HOH A 84 688 688 HOH HOH . 
E 5 HOH A 85 689 689 HOH HOH . 
E 5 HOH A 86 690 690 HOH HOH . 
E 5 HOH A 87 691 691 HOH HOH . 
E 5 HOH A 88 692 692 HOH HOH . 
E 5 HOH A 89 693 693 HOH HOH . 
E 5 HOH A 90 694 694 HOH HOH . 
E 5 HOH A 91 695 695 HOH HOH . 
E 5 HOH A 92 696 696 HOH HOH . 
E 5 HOH A 93 697 697 HOH HOH . 
E 5 HOH A 94 698 698 HOH HOH . 
E 5 HOH A 95 699 699 HOH HOH . 
E 5 HOH A 96 700 700 HOH HOH . 
E 5 HOH A 97 701 701 HOH HOH . 
E 5 HOH A 98 702 702 HOH HOH . 
E 5 HOH A 99 703 703 HOH HOH . 
E 5 HOH A 100 704 704 HOH HOH . 
E 5 HOH A 101 705 705 HOH HOH . 
E 5 HOH A 102 706 706 HOH HOH . 
E 5 HOH A 103 708 708 HOH HOH . 
E 5 HOH A 104 709 709 HOH HOH . 
E 5 HOH A 105 710 710 HOH HOH . 
E 5 HOH A 106 711 711 HOH HOH . 
E 5 HOH A 107 712 712 HOH HOH . 
E 5 HOH A 108 713 713 HOH HOH . 
E 5 HOH A 109 714 714 HOH HOH . 
E 5 HOH A 110 716 716 HOH HOH . 
E 5 HOH A 111 717 717 HOH HOH . 
E 5 HOH A 112 718 718 HOH HOH . 
E 5 HOH A 113 719 719 HOH HOH . 
E 5 HOH A 114 720 720 HOH HOH . 
E 5 HOH A 115 721 721 HOH HOH . 
E 5 HOH A 116 722 722 HOH HOH . 
E 5 HOH A 117 723 723 HOH HOH . 
E 5 HOH A 118 724 724 HOH HOH . 
E 5 HOH A 119 725 725 HOH HOH . 
E 5 HOH A 120 726 726 HOH HOH . 
E 5 HOH A 121 727 727 HOH HOH . 
E 5 HOH A 122 728 728 HOH HOH . 
E 5 HOH A 123 729 729 HOH HOH . 
E 5 HOH A 124 730 730 HOH HOH . 
E 5 HOH A 125 731 731 HOH HOH . 
E 5 HOH A 126 732 732 HOH HOH . 
E 5 HOH A 127 733 733 HOH HOH . 
E 5 HOH A 128 734 734 HOH HOH . 
E 5 HOH A 129 735 735 HOH HOH . 
E 5 HOH A 130 736 736 HOH HOH . 
E 5 HOH A 131 738 738 HOH HOH . 
E 5 HOH A 132 739 739 HOH HOH . 
E 5 HOH A 133 740 740 HOH HOH . 
E 5 HOH A 134 741 741 HOH HOH . 
E 5 HOH A 135 742 742 HOH HOH . 
E 5 HOH A 136 743 743 HOH HOH . 
E 5 HOH A 137 744 744 HOH HOH . 
E 5 HOH A 138 745 745 HOH HOH . 
E 5 HOH A 139 746 746 HOH HOH . 
E 5 HOH A 140 747 747 HOH HOH . 
E 5 HOH A 141 748 748 HOH HOH . 
F 5 HOH B 1 624 624 HOH HOH . 
F 5 HOH B 2 646 646 HOH HOH . 
F 5 HOH B 3 657 657 HOH HOH . 
F 5 HOH B 4 682 682 HOH HOH . 
F 5 HOH B 5 707 707 HOH HOH . 
F 5 HOH B 6 715 715 HOH HOH . 
F 5 HOH B 7 737 737 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               4.13 
_atom_site.Cartn_y               19.063 
_atom_site.Cartn_z               3.89 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        7.29 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           300 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#