data_3I49 # _model_server_result.job_id gbTLIopsSoWXLnpX_o48dw _model_server_result.datetime_utc '2024-11-14 04:53:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i49 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 3I49 # _exptl.entry_id 3I49 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3I49 _cell.length_a 41.374 _cell.length_b 41.374 _cell.length_c 117.213 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I49 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DT 1 B DT 501 1_555 B P ME6 2 B ME6 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale2 B O3' ME6 2 B ME6 502 1_555 B P DT 3 B DT 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 3I49 _atom_sites.fract_transf_matrix[1][1] 0.02417 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AKG A 1 400 400 AKG AKG . D 4 FE2 A 1 300 300 FE2 FE2 . E 5 HOH A 1 601 601 HOH HOH . E 5 HOH A 2 602 602 HOH HOH . E 5 HOH A 3 603 603 HOH HOH . E 5 HOH A 4 604 604 HOH HOH . E 5 HOH A 5 605 605 HOH HOH . E 5 HOH A 6 607 607 HOH HOH . E 5 HOH A 7 608 608 HOH HOH . E 5 HOH A 8 610 610 HOH HOH . E 5 HOH A 9 611 611 HOH HOH . E 5 HOH A 10 612 612 HOH HOH . E 5 HOH A 11 613 613 HOH HOH . E 5 HOH A 12 614 614 HOH HOH . E 5 HOH A 13 615 615 HOH HOH . E 5 HOH A 14 616 616 HOH HOH . E 5 HOH A 15 617 617 HOH HOH . E 5 HOH A 16 618 618 HOH HOH . E 5 HOH A 17 619 619 HOH HOH . E 5 HOH A 18 620 620 HOH HOH . E 5 HOH A 19 621 621 HOH HOH . E 5 HOH A 20 623 623 HOH HOH . E 5 HOH A 21 624 624 HOH HOH . E 5 HOH A 22 625 625 HOH HOH . E 5 HOH A 23 626 626 HOH HOH . E 5 HOH A 24 627 627 HOH HOH . E 5 HOH A 25 628 628 HOH HOH . E 5 HOH A 26 629 629 HOH HOH . E 5 HOH A 27 630 630 HOH HOH . E 5 HOH A 28 631 631 HOH HOH . E 5 HOH A 29 632 632 HOH HOH . E 5 HOH A 30 633 633 HOH HOH . E 5 HOH A 31 634 634 HOH HOH . E 5 HOH A 32 635 635 HOH HOH . E 5 HOH A 33 636 636 HOH HOH . E 5 HOH A 34 637 637 HOH HOH . E 5 HOH A 35 638 638 HOH HOH . E 5 HOH A 36 639 639 HOH HOH . E 5 HOH A 37 640 640 HOH HOH . E 5 HOH A 38 642 642 HOH HOH . E 5 HOH A 39 643 643 HOH HOH . E 5 HOH A 40 644 644 HOH HOH . E 5 HOH A 41 645 645 HOH HOH . E 5 HOH A 42 646 646 HOH HOH . E 5 HOH A 43 647 647 HOH HOH . E 5 HOH A 44 648 648 HOH HOH . E 5 HOH A 45 649 649 HOH HOH . E 5 HOH A 46 650 650 HOH HOH . E 5 HOH A 47 651 651 HOH HOH . E 5 HOH A 48 652 652 HOH HOH . E 5 HOH A 49 653 653 HOH HOH . E 5 HOH A 50 654 654 HOH HOH . E 5 HOH A 51 655 655 HOH HOH . E 5 HOH A 52 656 656 HOH HOH . E 5 HOH A 53 657 657 HOH HOH . E 5 HOH A 54 658 658 HOH HOH . E 5 HOH A 55 659 659 HOH HOH . E 5 HOH A 56 660 660 HOH HOH . E 5 HOH A 57 661 661 HOH HOH . E 5 HOH A 58 662 662 HOH HOH . E 5 HOH A 59 663 663 HOH HOH . E 5 HOH A 60 664 664 HOH HOH . E 5 HOH A 61 665 665 HOH HOH . E 5 HOH A 62 666 666 HOH HOH . E 5 HOH A 63 667 667 HOH HOH . E 5 HOH A 64 668 668 HOH HOH . E 5 HOH A 65 669 669 HOH HOH . E 5 HOH A 66 670 670 HOH HOH . E 5 HOH A 67 671 671 HOH HOH . E 5 HOH A 68 672 672 HOH HOH . E 5 HOH A 69 673 673 HOH HOH . E 5 HOH A 70 674 674 HOH HOH . E 5 HOH A 71 675 675 HOH HOH . E 5 HOH A 72 676 676 HOH HOH . E 5 HOH A 73 677 677 HOH HOH . E 5 HOH A 74 678 678 HOH HOH . E 5 HOH A 75 679 679 HOH HOH . E 5 HOH A 76 680 680 HOH HOH . E 5 HOH A 77 681 681 HOH HOH . E 5 HOH A 78 682 682 HOH HOH . E 5 HOH A 79 683 683 HOH HOH . E 5 HOH A 80 684 684 HOH HOH . E 5 HOH A 81 685 685 HOH HOH . E 5 HOH A 82 686 686 HOH HOH . E 5 HOH A 83 687 687 HOH HOH . E 5 HOH A 84 688 688 HOH HOH . E 5 HOH A 85 689 689 HOH HOH . E 5 HOH A 86 690 690 HOH HOH . E 5 HOH A 87 691 691 HOH HOH . E 5 HOH A 88 692 692 HOH HOH . E 5 HOH A 89 693 693 HOH HOH . E 5 HOH A 90 695 695 HOH HOH . E 5 HOH A 91 696 696 HOH HOH . E 5 HOH A 92 697 697 HOH HOH . E 5 HOH A 93 698 698 HOH HOH . E 5 HOH A 94 699 699 HOH HOH . E 5 HOH A 95 700 700 HOH HOH . E 5 HOH A 96 701 701 HOH HOH . E 5 HOH A 97 703 703 HOH HOH . E 5 HOH A 98 705 705 HOH HOH . E 5 HOH A 99 706 706 HOH HOH . E 5 HOH A 100 707 707 HOH HOH . E 5 HOH A 101 708 708 HOH HOH . E 5 HOH A 102 709 709 HOH HOH . E 5 HOH A 103 710 710 HOH HOH . E 5 HOH A 104 711 711 HOH HOH . E 5 HOH A 105 712 712 HOH HOH . E 5 HOH A 106 714 714 HOH HOH . E 5 HOH A 107 715 715 HOH HOH . E 5 HOH A 108 716 716 HOH HOH . E 5 HOH A 109 717 717 HOH HOH . E 5 HOH A 110 718 718 HOH HOH . E 5 HOH A 111 719 719 HOH HOH . E 5 HOH A 112 720 720 HOH HOH . E 5 HOH A 113 721 721 HOH HOH . E 5 HOH A 114 722 722 HOH HOH . E 5 HOH A 115 723 723 HOH HOH . E 5 HOH A 116 724 724 HOH HOH . E 5 HOH A 117 725 725 HOH HOH . E 5 HOH A 118 726 726 HOH HOH . E 5 HOH A 119 727 727 HOH HOH . E 5 HOH A 120 728 728 HOH HOH . E 5 HOH A 121 729 729 HOH HOH . E 5 HOH A 122 730 730 HOH HOH . E 5 HOH A 123 731 731 HOH HOH . E 5 HOH A 124 732 732 HOH HOH . E 5 HOH A 125 733 733 HOH HOH . E 5 HOH A 126 734 734 HOH HOH . E 5 HOH A 127 735 735 HOH HOH . E 5 HOH A 128 737 737 HOH HOH . E 5 HOH A 129 738 738 HOH HOH . E 5 HOH A 130 739 739 HOH HOH . E 5 HOH A 131 740 740 HOH HOH . E 5 HOH A 132 741 741 HOH HOH . E 5 HOH A 133 742 742 HOH HOH . E 5 HOH A 134 743 743 HOH HOH . E 5 HOH A 135 744 744 HOH HOH . E 5 HOH A 136 745 745 HOH HOH . E 5 HOH A 137 746 746 HOH HOH . E 5 HOH A 138 747 747 HOH HOH . E 5 HOH A 139 748 748 HOH HOH . E 5 HOH A 140 749 749 HOH HOH . E 5 HOH A 141 750 750 HOH HOH . E 5 HOH A 142 751 751 HOH HOH . E 5 HOH A 143 752 752 HOH HOH . E 5 HOH A 144 753 753 HOH HOH . E 5 HOH A 145 754 754 HOH HOH . E 5 HOH A 146 755 755 HOH HOH . E 5 HOH A 147 756 756 HOH HOH . E 5 HOH A 148 757 757 HOH HOH . E 5 HOH A 149 758 758 HOH HOH . E 5 HOH A 150 759 759 HOH HOH . E 5 HOH A 151 760 760 HOH HOH . E 5 HOH A 152 761 761 HOH HOH . E 5 HOH A 153 762 762 HOH HOH . E 5 HOH A 154 763 763 HOH HOH . E 5 HOH A 155 764 764 HOH HOH . E 5 HOH A 156 765 765 HOH HOH . E 5 HOH A 157 766 766 HOH HOH . E 5 HOH A 158 767 767 HOH HOH . E 5 HOH A 159 768 768 HOH HOH . E 5 HOH A 160 769 769 HOH HOH . E 5 HOH A 161 771 771 HOH HOH . E 5 HOH A 162 772 772 HOH HOH . E 5 HOH A 163 773 773 HOH HOH . E 5 HOH A 164 774 774 HOH HOH . E 5 HOH A 165 775 775 HOH HOH . E 5 HOH A 166 776 776 HOH HOH . E 5 HOH A 167 777 777 HOH HOH . E 5 HOH A 168 778 778 HOH HOH . E 5 HOH A 169 779 779 HOH HOH . E 5 HOH A 170 780 780 HOH HOH . E 5 HOH A 171 782 782 HOH HOH . E 5 HOH A 172 783 783 HOH HOH . E 5 HOH A 173 784 784 HOH HOH . E 5 HOH A 174 785 785 HOH HOH . E 5 HOH A 175 786 786 HOH HOH . E 5 HOH A 176 787 787 HOH HOH . E 5 HOH A 177 788 788 HOH HOH . E 5 HOH A 178 789 789 HOH HOH . E 5 HOH A 179 790 790 HOH HOH . E 5 HOH A 180 791 791 HOH HOH . E 5 HOH A 181 792 792 HOH HOH . E 5 HOH A 182 793 793 HOH HOH . E 5 HOH A 183 794 794 HOH HOH . E 5 HOH A 184 795 795 HOH HOH . E 5 HOH A 185 796 796 HOH HOH . E 5 HOH A 186 797 797 HOH HOH . E 5 HOH A 187 799 799 HOH HOH . E 5 HOH A 188 800 800 HOH HOH . E 5 HOH A 189 801 801 HOH HOH . E 5 HOH A 190 802 802 HOH HOH . E 5 HOH A 191 803 803 HOH HOH . E 5 HOH A 192 804 804 HOH HOH . E 5 HOH A 193 805 805 HOH HOH . E 5 HOH A 194 806 806 HOH HOH . E 5 HOH A 195 807 807 HOH HOH . E 5 HOH A 196 808 808 HOH HOH . E 5 HOH A 197 809 809 HOH HOH . E 5 HOH A 198 810 810 HOH HOH . E 5 HOH A 199 811 811 HOH HOH . E 5 HOH A 200 812 812 HOH HOH . E 5 HOH A 201 813 813 HOH HOH . E 5 HOH A 202 814 814 HOH HOH . E 5 HOH A 203 815 815 HOH HOH . E 5 HOH A 204 816 816 HOH HOH . E 5 HOH A 205 817 817 HOH HOH . E 5 HOH A 206 818 818 HOH HOH . E 5 HOH A 207 819 819 HOH HOH . E 5 HOH A 208 820 820 HOH HOH . E 5 HOH A 209 821 821 HOH HOH . E 5 HOH A 210 822 822 HOH HOH . E 5 HOH A 211 823 823 HOH HOH . E 5 HOH A 212 824 824 HOH HOH . E 5 HOH A 213 825 825 HOH HOH . E 5 HOH A 214 826 826 HOH HOH . E 5 HOH A 215 827 827 HOH HOH . E 5 HOH A 216 828 828 HOH HOH . E 5 HOH A 217 829 829 HOH HOH . E 5 HOH A 218 830 830 HOH HOH . E 5 HOH A 219 831 831 HOH HOH . E 5 HOH A 220 832 832 HOH HOH . E 5 HOH A 221 834 834 HOH HOH . E 5 HOH A 222 835 835 HOH HOH . E 5 HOH A 223 836 836 HOH HOH . E 5 HOH A 224 837 837 HOH HOH . E 5 HOH A 225 838 838 HOH HOH . E 5 HOH A 226 839 839 HOH HOH . E 5 HOH A 227 840 840 HOH HOH . E 5 HOH A 228 841 841 HOH HOH . E 5 HOH A 229 842 842 HOH HOH . E 5 HOH A 230 843 843 HOH HOH . E 5 HOH A 231 844 844 HOH HOH . E 5 HOH A 232 845 845 HOH HOH . E 5 HOH A 233 846 846 HOH HOH . E 5 HOH A 234 847 847 HOH HOH . E 5 HOH A 235 849 849 HOH HOH . E 5 HOH A 236 850 850 HOH HOH . E 5 HOH A 237 851 851 HOH HOH . E 5 HOH A 238 852 852 HOH HOH . E 5 HOH A 239 853 853 HOH HOH . E 5 HOH A 240 854 854 HOH HOH . E 5 HOH A 241 855 855 HOH HOH . E 5 HOH A 242 856 856 HOH HOH . E 5 HOH A 243 857 857 HOH HOH . E 5 HOH A 244 858 858 HOH HOH . E 5 HOH A 245 859 859 HOH HOH . E 5 HOH A 246 860 860 HOH HOH . E 5 HOH A 247 861 861 HOH HOH . E 5 HOH A 248 862 862 HOH HOH . E 5 HOH A 249 863 863 HOH HOH . E 5 HOH A 250 864 864 HOH HOH . E 5 HOH A 251 865 865 HOH HOH . E 5 HOH A 252 866 866 HOH HOH . E 5 HOH A 253 867 867 HOH HOH . E 5 HOH A 254 868 868 HOH HOH . E 5 HOH A 255 869 869 HOH HOH . E 5 HOH A 256 870 870 HOH HOH . E 5 HOH A 257 871 871 HOH HOH . E 5 HOH A 258 872 872 HOH HOH . E 5 HOH A 259 873 873 HOH HOH . E 5 HOH A 260 874 874 HOH HOH . E 5 HOH A 261 875 875 HOH HOH . E 5 HOH A 262 876 876 HOH HOH . E 5 HOH A 263 877 877 HOH HOH . E 5 HOH A 264 878 878 HOH HOH . E 5 HOH A 265 879 879 HOH HOH . E 5 HOH A 266 880 880 HOH HOH . E 5 HOH A 267 881 881 HOH HOH . F 5 HOH B 1 606 606 HOH HOH . F 5 HOH B 2 609 609 HOH HOH . F 5 HOH B 3 622 622 HOH HOH . F 5 HOH B 4 641 641 HOH HOH . F 5 HOH B 5 694 694 HOH HOH . F 5 HOH B 6 702 702 HOH HOH . F 5 HOH B 7 704 704 HOH HOH . F 5 HOH B 8 713 713 HOH HOH . F 5 HOH B 9 736 736 HOH HOH . F 5 HOH B 10 770 770 HOH HOH . F 5 HOH B 11 781 781 HOH HOH . F 5 HOH B 12 798 798 HOH HOH . F 5 HOH B 13 833 833 HOH HOH . F 5 HOH B 14 848 848 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . C 3 16.336 5.557 -3.115 1 11.07 ? C1 AKG 400 A 1 HETATM 2 O O1 AKG . . . C 3 15.577 6.376 -2.626 1 15.47 ? O1 AKG 400 A 1 HETATM 3 O O2 AKG . . . C 3 17.559 5.935 -3.514 1 12.74 ? O2 AKG 400 A 1 HETATM 4 C C2 AKG . . . C 3 15.942 4.116 -3.188 1 10.47 ? C2 AKG 400 A 1 HETATM 5 O O5 AKG . . . C 3 16.697 3.32 -3.707 1 9.81 ? O5 AKG 400 A 1 HETATM 6 C C3 AKG . . . C 3 14.577 3.682 -2.683 1 9.85 ? C3 AKG 400 A 1 HETATM 7 C C4 AKG . . . C 3 14.453 2.151 -2.656 1 11.33 ? C4 AKG 400 A 1 HETATM 8 C C5 AKG . . . C 3 13.157 1.733 -1.996 1 11.37 ? C5 AKG 400 A 1 HETATM 9 O O3 AKG . . . C 3 12.125 2.337 -2.208 1 9.66 ? O3 AKG 400 A 1 HETATM 10 O O4 AKG . . . C 3 13.134 0.637 -1.236 1 11.11 ? O4 AKG 400 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #