data_3I4Q # _model_server_result.job_id H6kJp_hVRPzt_fTrw9m9sg _model_server_result.datetime_utc '2025-03-03 02:44:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i4q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":176}' # _entry.id 3I4Q # _exptl.entry_id 3I4Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I4Q _cell.length_a 110.666 _cell.length_b 110.666 _cell.length_c 74.324 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I4Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 38 A MSE 37 1_555 A N ASP 39 A ASP 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A C PHE 46 A PHE 45 1_555 A N MSE 47 A MSE 46 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A C PHE 46 A PHE 45 1_555 A N MSE 47 A MSE 46 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 47 A MSE 46 1_555 A N ALA 48 A ALA 47 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C MSE 47 A MSE 46 1_555 A N ALA 48 A ALA 47 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C PRO 50 A PRO 49 1_555 A N MSE 51 A MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 A C MSE 51 A MSE 50 1_555 A N PHE 52 A PHE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C LYS 96 A LYS 95 1_555 A N MSE 97 A MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale9 A C MSE 97 A MSE 96 1_555 A N SER 98 A SER 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? metalc ? metalc1 A OD2 ASP 67 A ASP 66 1_555 B NA NA . A NA 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A OD2 ASP 72 A ASP 71 1_555 B NA NA . A NA 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 A OD1 ASP 104 A ASP 103 1_555 B NA NA . A NA 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A O LYS 144 A LYS 143 1_555 C NA NA . A NA 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc5 A O GLU 147 A GLU 146 1_555 C NA NA . A NA 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 A O LYS 150 A LYS 149 1_555 C NA NA . A NA 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc7 B NA NA . A NA 176 1_555 D O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc8 B NA NA . A NA 176 1_555 D O HOH . A HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc9 B NA NA . A NA 176 1_555 D O HOH . A HOH 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc10 B NA NA . A NA 176 1_555 D O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc11 C NA NA . A NA 177 1_555 D O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3I4Q _atom_sites.fract_transf_matrix[1][1] 0.009036 _atom_sites.fract_transf_matrix[1][2] 0.005217 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 176 1 NA NA . C 2 NA A 1 177 2 NA NA . D 3 HOH A 1 178 1 HOH HOH . D 3 HOH A 2 179 2 HOH HOH . D 3 HOH A 3 180 3 HOH HOH . D 3 HOH A 4 181 4 HOH HOH . D 3 HOH A 5 182 5 HOH HOH . D 3 HOH A 6 183 6 HOH HOH . D 3 HOH A 7 184 7 HOH HOH . D 3 HOH A 8 185 8 HOH HOH . D 3 HOH A 9 186 9 HOH HOH . D 3 HOH A 10 187 10 HOH HOH . D 3 HOH A 11 188 11 HOH HOH . D 3 HOH A 12 189 12 HOH HOH . D 3 HOH A 13 190 13 HOH HOH . D 3 HOH A 14 191 14 HOH HOH . D 3 HOH A 15 192 15 HOH HOH . D 3 HOH A 16 193 16 HOH HOH . D 3 HOH A 17 194 17 HOH HOH . D 3 HOH A 18 195 18 HOH HOH . D 3 HOH A 19 196 19 HOH HOH . D 3 HOH A 20 197 20 HOH HOH . D 3 HOH A 21 198 21 HOH HOH . D 3 HOH A 22 199 22 HOH HOH . D 3 HOH A 23 200 24 HOH HOH . D 3 HOH A 24 201 25 HOH HOH . D 3 HOH A 25 202 26 HOH HOH . D 3 HOH A 26 203 27 HOH HOH . D 3 HOH A 27 204 29 HOH HOH . D 3 HOH A 28 205 31 HOH HOH . D 3 HOH A 29 206 32 HOH HOH . D 3 HOH A 30 207 33 HOH HOH . D 3 HOH A 31 208 34 HOH HOH . D 3 HOH A 32 209 37 HOH HOH . D 3 HOH A 33 210 38 HOH HOH . D 3 HOH A 34 211 39 HOH HOH . D 3 HOH A 35 212 41 HOH HOH . D 3 HOH A 36 213 42 HOH HOH . D 3 HOH A 37 214 43 HOH HOH . D 3 HOH A 38 215 45 HOH HOH . D 3 HOH A 39 216 46 HOH HOH . D 3 HOH A 40 217 47 HOH HOH . D 3 HOH A 41 218 49 HOH HOH . D 3 HOH A 42 219 50 HOH HOH . D 3 HOH A 43 220 51 HOH HOH . D 3 HOH A 44 221 52 HOH HOH . D 3 HOH A 45 222 54 HOH HOH . D 3 HOH A 46 223 55 HOH HOH . D 3 HOH A 47 224 57 HOH HOH . D 3 HOH A 48 225 58 HOH HOH . D 3 HOH A 49 226 59 HOH HOH . D 3 HOH A 50 227 60 HOH HOH . D 3 HOH A 51 228 62 HOH HOH . D 3 HOH A 52 229 63 HOH HOH . D 3 HOH A 53 230 64 HOH HOH . D 3 HOH A 54 231 65 HOH HOH . D 3 HOH A 55 232 66 HOH HOH . D 3 HOH A 56 233 67 HOH HOH . D 3 HOH A 57 234 68 HOH HOH . D 3 HOH A 58 235 69 HOH HOH . D 3 HOH A 59 236 71 HOH HOH . D 3 HOH A 60 237 72 HOH HOH . D 3 HOH A 61 238 73 HOH HOH . D 3 HOH A 62 239 74 HOH HOH . D 3 HOH A 63 240 76 HOH HOH . D 3 HOH A 64 241 78 HOH HOH . D 3 HOH A 65 242 79 HOH HOH . D 3 HOH A 66 243 80 HOH HOH . D 3 HOH A 67 244 81 HOH HOH . D 3 HOH A 68 245 82 HOH HOH . D 3 HOH A 69 246 83 HOH HOH . D 3 HOH A 70 247 84 HOH HOH . D 3 HOH A 71 248 85 HOH HOH . D 3 HOH A 72 249 87 HOH HOH . D 3 HOH A 73 250 88 HOH HOH . D 3 HOH A 74 251 90 HOH HOH . D 3 HOH A 75 252 91 HOH HOH . D 3 HOH A 76 253 93 HOH HOH . D 3 HOH A 77 254 96 HOH HOH . D 3 HOH A 78 255 97 HOH HOH . D 3 HOH A 79 256 98 HOH HOH . D 3 HOH A 80 257 99 HOH HOH . D 3 HOH A 81 258 100 HOH HOH . D 3 HOH A 82 259 101 HOH HOH . D 3 HOH A 83 260 102 HOH HOH . D 3 HOH A 84 261 103 HOH HOH . D 3 HOH A 85 262 105 HOH HOH . D 3 HOH A 86 263 106 HOH HOH . D 3 HOH A 87 264 107 HOH HOH . D 3 HOH A 88 265 108 HOH HOH . D 3 HOH A 89 266 109 HOH HOH . D 3 HOH A 90 267 110 HOH HOH . D 3 HOH A 91 268 111 HOH HOH . D 3 HOH A 92 269 112 HOH HOH . D 3 HOH A 93 270 116 HOH HOH . D 3 HOH A 94 271 117 HOH HOH . D 3 HOH A 95 272 118 HOH HOH . D 3 HOH A 96 273 119 HOH HOH . D 3 HOH A 97 274 1 HOH HOH . D 3 HOH A 98 275 2 HOH HOH . D 3 HOH A 99 276 3 HOH HOH . D 3 HOH A 100 277 4 HOH HOH . D 3 HOH A 101 278 12 HOH HOH . D 3 HOH A 102 279 13 HOH HOH . D 3 HOH A 103 280 14 HOH HOH . D 3 HOH A 104 281 16 HOH HOH . D 3 HOH A 105 282 19 HOH HOH . D 3 HOH A 106 283 20 HOH HOH . D 3 HOH A 107 284 22 HOH HOH . D 3 HOH A 108 285 23 HOH HOH . D 3 HOH A 109 286 24 HOH HOH . D 3 HOH A 110 287 25 HOH HOH . D 3 HOH A 111 288 27 HOH HOH . D 3 HOH A 112 289 28 HOH HOH . D 3 HOH A 113 290 29 HOH HOH . D 3 HOH A 114 291 30 HOH HOH . D 3 HOH A 115 292 31 HOH HOH . D 3 HOH A 116 293 32 HOH HOH . D 3 HOH A 117 294 33 HOH HOH . D 3 HOH A 118 295 36 HOH HOH . D 3 HOH A 119 296 38 HOH HOH . D 3 HOH A 120 297 42 HOH HOH . D 3 HOH A 121 298 43 HOH HOH . D 3 HOH A 122 299 44 HOH HOH . D 3 HOH A 123 300 45 HOH HOH . D 3 HOH A 124 301 49 HOH HOH . D 3 HOH A 125 302 50 HOH HOH . D 3 HOH A 126 303 53 HOH HOH . D 3 HOH A 127 304 54 HOH HOH . D 3 HOH A 128 305 55 HOH HOH . D 3 HOH A 129 306 56 HOH HOH . D 3 HOH A 130 307 68 HOH HOH . D 3 HOH A 131 308 73 HOH HOH . D 3 HOH A 132 309 74 HOH HOH . D 3 HOH A 133 310 77 HOH HOH . D 3 HOH A 134 311 79 HOH HOH . D 3 HOH A 135 312 82 HOH HOH . D 3 HOH A 136 313 83 HOH HOH . D 3 HOH A 137 314 84 HOH HOH . D 3 HOH A 138 315 89 HOH HOH . D 3 HOH A 139 316 95 HOH HOH . D 3 HOH A 140 317 96 HOH HOH . D 3 HOH A 141 318 98 HOH HOH . D 3 HOH A 142 319 102 HOH HOH . D 3 HOH A 143 320 107 HOH HOH . D 3 HOH A 144 321 108 HOH HOH . D 3 HOH A 145 322 109 HOH HOH . D 3 HOH A 146 323 111 HOH HOH . D 3 HOH A 147 324 112 HOH HOH . D 3 HOH A 148 325 118 HOH HOH . D 3 HOH A 149 326 121 HOH HOH . D 3 HOH A 150 327 125 HOH HOH . D 3 HOH A 151 328 126 HOH HOH . D 3 HOH A 152 329 127 HOH HOH . D 3 HOH A 153 330 128 HOH HOH . D 3 HOH A 154 331 131 HOH HOH . D 3 HOH A 155 332 132 HOH HOH . D 3 HOH A 156 333 133 HOH HOH . D 3 HOH A 157 334 134 HOH HOH . D 3 HOH A 158 335 135 HOH HOH . D 3 HOH A 159 336 141 HOH HOH . D 3 HOH A 160 337 142 HOH HOH . D 3 HOH A 161 338 143 HOH HOH . D 3 HOH A 162 339 144 HOH HOH . D 3 HOH A 163 340 151 HOH HOH . D 3 HOH A 164 341 152 HOH HOH . D 3 HOH A 165 342 153 HOH HOH . D 3 HOH A 166 343 154 HOH HOH . D 3 HOH A 167 344 155 HOH HOH . D 3 HOH A 168 345 156 HOH HOH . D 3 HOH A 169 346 157 HOH HOH . D 3 HOH A 170 347 158 HOH HOH . D 3 HOH A 171 348 159 HOH HOH . D 3 HOH A 172 349 161 HOH HOH . D 3 HOH A 173 350 162 HOH HOH . D 3 HOH A 174 351 164 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 22.562 _atom_site.Cartn_y -4.955 _atom_site.Cartn_z 19.611 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 176 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #