data_3I58 # _model_server_result.job_id 4ud8qrn8zwO93ASXrRxqAA _model_server_result.datetime_utc '2024-11-30 07:55:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 3I58 # _exptl.entry_id 3I58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I58 _cell.length_a 108.392 _cell.length_b 108.392 _cell.length_c 210.321 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 159 n n C1 C2 GOL sing 160 n n C1 H11 GOL sing 161 n n C1 H12 GOL sing 162 n n O1 HO1 GOL sing 163 n n C2 O2 GOL sing 164 n n C2 C3 GOL sing 165 n n C2 H2 GOL sing 166 n n O2 HO2 GOL sing 167 n n C3 O3 GOL sing 168 n n C3 H31 GOL sing 169 n n C3 H32 GOL sing 170 n n O3 HO3 GOL sing 171 n n # _atom_sites.entry_id 3I58 _atom_sites.fract_transf_matrix[1][1] 0.009226 _atom_sites.fract_transf_matrix[1][2] 0.005327 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 1 SAH SAH . D 3 7NA A 1 402 3 7NA NA . E 4 GOL A 1 403 5 GOL GOL . F 2 SAH B 1 401 2 SAH SAH . G 3 7NA B 1 402 4 7NA NA . H 4 GOL B 1 404 6 GOL GOL . I 5 HOH A 1 502 2 HOH HOH . I 5 HOH A 2 503 3 HOH HOH . I 5 HOH A 3 506 6 HOH HOH . I 5 HOH A 4 510 10 HOH HOH . I 5 HOH A 5 511 11 HOH HOH . I 5 HOH A 6 513 13 HOH HOH . I 5 HOH A 7 520 20 HOH HOH . I 5 HOH A 8 524 24 HOH HOH . I 5 HOH A 9 526 26 HOH HOH . I 5 HOH A 10 527 27 HOH HOH . I 5 HOH A 11 528 28 HOH HOH . I 5 HOH A 12 530 30 HOH HOH . I 5 HOH A 13 531 31 HOH HOH . I 5 HOH A 14 532 32 HOH HOH . I 5 HOH A 15 533 33 HOH HOH . I 5 HOH A 16 545 45 HOH HOH . I 5 HOH A 17 546 46 HOH HOH . I 5 HOH A 18 547 47 HOH HOH . I 5 HOH A 19 549 49 HOH HOH . I 5 HOH A 20 550 50 HOH HOH . I 5 HOH A 21 556 56 HOH HOH . I 5 HOH A 22 559 59 HOH HOH . I 5 HOH A 23 561 61 HOH HOH . I 5 HOH A 24 562 62 HOH HOH . I 5 HOH A 25 564 64 HOH HOH . I 5 HOH A 26 566 66 HOH HOH . I 5 HOH A 27 568 68 HOH HOH . I 5 HOH A 28 576 76 HOH HOH . I 5 HOH A 29 577 77 HOH HOH . I 5 HOH A 30 580 80 HOH HOH . I 5 HOH A 31 581 81 HOH HOH . I 5 HOH A 32 584 84 HOH HOH . I 5 HOH A 33 586 86 HOH HOH . I 5 HOH A 34 587 87 HOH HOH . I 5 HOH A 35 593 93 HOH HOH . I 5 HOH A 36 594 94 HOH HOH . I 5 HOH A 37 595 95 HOH HOH . I 5 HOH A 38 597 97 HOH HOH . I 5 HOH A 39 598 98 HOH HOH . I 5 HOH A 40 601 101 HOH HOH . I 5 HOH A 41 602 102 HOH HOH . I 5 HOH A 42 604 104 HOH HOH . I 5 HOH A 43 609 109 HOH HOH . I 5 HOH A 44 610 110 HOH HOH . I 5 HOH A 45 611 111 HOH HOH . I 5 HOH A 46 613 113 HOH HOH . I 5 HOH A 47 615 115 HOH HOH . I 5 HOH A 48 616 116 HOH HOH . I 5 HOH A 49 621 121 HOH HOH . I 5 HOH A 50 622 122 HOH HOH . I 5 HOH A 51 623 123 HOH HOH . I 5 HOH A 52 624 124 HOH HOH . I 5 HOH A 53 626 126 HOH HOH . I 5 HOH A 54 627 127 HOH HOH . I 5 HOH A 55 629 129 HOH HOH . I 5 HOH A 56 630 130 HOH HOH . I 5 HOH A 57 631 131 HOH HOH . I 5 HOH A 58 632 132 HOH HOH . I 5 HOH A 59 633 133 HOH HOH . I 5 HOH A 60 634 134 HOH HOH . I 5 HOH A 61 636 136 HOH HOH . I 5 HOH A 62 637 137 HOH HOH . I 5 HOH A 63 638 138 HOH HOH . I 5 HOH A 64 640 140 HOH HOH . I 5 HOH A 65 641 141 HOH HOH . I 5 HOH A 66 642 142 HOH HOH . I 5 HOH A 67 644 144 HOH HOH . I 5 HOH A 68 646 146 HOH HOH . I 5 HOH A 69 647 147 HOH HOH . I 5 HOH A 70 652 152 HOH HOH . I 5 HOH A 71 654 154 HOH HOH . I 5 HOH A 72 659 159 HOH HOH . I 5 HOH A 73 660 160 HOH HOH . I 5 HOH A 74 661 161 HOH HOH . I 5 HOH A 75 663 163 HOH HOH . J 5 HOH B 1 501 1 HOH HOH . J 5 HOH B 2 504 4 HOH HOH . J 5 HOH B 3 505 5 HOH HOH . J 5 HOH B 4 507 7 HOH HOH . J 5 HOH B 5 508 8 HOH HOH . J 5 HOH B 6 509 9 HOH HOH . J 5 HOH B 7 512 12 HOH HOH . J 5 HOH B 8 514 14 HOH HOH . J 5 HOH B 9 515 15 HOH HOH . J 5 HOH B 10 516 16 HOH HOH . J 5 HOH B 11 517 17 HOH HOH . J 5 HOH B 12 518 18 HOH HOH . J 5 HOH B 13 519 19 HOH HOH . J 5 HOH B 14 521 21 HOH HOH . J 5 HOH B 15 522 22 HOH HOH . J 5 HOH B 16 523 23 HOH HOH . J 5 HOH B 17 525 25 HOH HOH . J 5 HOH B 18 529 29 HOH HOH . J 5 HOH B 19 534 34 HOH HOH . J 5 HOH B 20 535 35 HOH HOH . J 5 HOH B 21 536 36 HOH HOH . J 5 HOH B 22 537 37 HOH HOH . J 5 HOH B 23 538 38 HOH HOH . J 5 HOH B 24 539 39 HOH HOH . J 5 HOH B 25 540 40 HOH HOH . J 5 HOH B 26 541 41 HOH HOH . J 5 HOH B 27 542 42 HOH HOH . J 5 HOH B 28 543 43 HOH HOH . J 5 HOH B 29 544 44 HOH HOH . J 5 HOH B 30 548 48 HOH HOH . J 5 HOH B 31 551 51 HOH HOH . J 5 HOH B 32 552 52 HOH HOH . J 5 HOH B 33 553 53 HOH HOH . J 5 HOH B 34 554 54 HOH HOH . J 5 HOH B 35 555 55 HOH HOH . J 5 HOH B 36 557 57 HOH HOH . J 5 HOH B 37 558 58 HOH HOH . J 5 HOH B 38 560 60 HOH HOH . J 5 HOH B 39 563 63 HOH HOH . J 5 HOH B 40 565 65 HOH HOH . J 5 HOH B 41 567 67 HOH HOH . J 5 HOH B 42 569 69 HOH HOH . J 5 HOH B 43 570 70 HOH HOH . J 5 HOH B 44 571 71 HOH HOH . J 5 HOH B 45 572 72 HOH HOH . J 5 HOH B 46 573 73 HOH HOH . J 5 HOH B 47 574 74 HOH HOH . J 5 HOH B 48 575 75 HOH HOH . J 5 HOH B 49 578 78 HOH HOH . J 5 HOH B 50 579 79 HOH HOH . J 5 HOH B 51 582 82 HOH HOH . J 5 HOH B 52 583 83 HOH HOH . J 5 HOH B 53 585 85 HOH HOH . J 5 HOH B 54 588 88 HOH HOH . J 5 HOH B 55 589 89 HOH HOH . J 5 HOH B 56 590 90 HOH HOH . J 5 HOH B 57 591 91 HOH HOH . J 5 HOH B 58 592 92 HOH HOH . J 5 HOH B 59 596 96 HOH HOH . J 5 HOH B 60 599 99 HOH HOH . J 5 HOH B 61 600 100 HOH HOH . J 5 HOH B 62 603 103 HOH HOH . J 5 HOH B 63 605 105 HOH HOH . J 5 HOH B 64 606 106 HOH HOH . J 5 HOH B 65 607 107 HOH HOH . J 5 HOH B 66 608 108 HOH HOH . J 5 HOH B 67 612 112 HOH HOH . J 5 HOH B 68 614 114 HOH HOH . J 5 HOH B 69 617 117 HOH HOH . J 5 HOH B 70 618 118 HOH HOH . J 5 HOH B 71 619 119 HOH HOH . J 5 HOH B 72 620 120 HOH HOH . J 5 HOH B 73 625 125 HOH HOH . J 5 HOH B 74 628 128 HOH HOH . J 5 HOH B 75 635 135 HOH HOH . J 5 HOH B 76 639 139 HOH HOH . J 5 HOH B 77 643 143 HOH HOH . J 5 HOH B 78 645 145 HOH HOH . J 5 HOH B 79 648 148 HOH HOH . J 5 HOH B 80 649 149 HOH HOH . J 5 HOH B 81 650 150 HOH HOH . J 5 HOH B 82 651 151 HOH HOH . J 5 HOH B 83 653 153 HOH HOH . J 5 HOH B 84 655 155 HOH HOH . J 5 HOH B 85 656 156 HOH HOH . J 5 HOH B 86 657 157 HOH HOH . J 5 HOH B 87 658 158 HOH HOH . J 5 HOH B 88 662 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -57.833 -2.009 -49.964 1 99.12 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . E 4 -58.27 -1.976 -51.333 1 97.86 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . E 4 -58.901 -2.669 -49.076 1 99.54 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . E 4 -59.161 -4.007 -49.551 1 100.21 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . E 4 -58.406 -2.7 -47.611 1 98.63 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . E 4 -59.384 -3.313 -46.753 1 96.39 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #