data_3I5C # _model_server_result.job_id SgDv4uRfpLo8KnrEcdVNkQ _model_server_result.datetime_utc '2024-11-25 16:12:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i5c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 3I5C # _exptl.entry_id 3I5C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3I5C _cell.length_a 92.813 _cell.length_b 92.813 _cell.length_c 133.693 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 113 A GLU 254 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 C MG MG . A MG 400 1_555 H O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc3 C MG MG . A MG 400 1_555 H O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc4 C MG MG . A MG 400 1_555 H O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc5 C MG MG . A MG 400 1_555 H O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3I5C _atom_sites.fract_transf_matrix[1][1] 0.010774 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 400 400 MG MG . D 3 C2E A 1 1 1 C2E C2E . E 3 C2E A 1 3 3 C2E C2E . F 3 C2E B 1 2 2 C2E C2E . G 3 C2E B 1 4 4 C2E C2E . H 4 HOH A 1 2 2 HOH HOH . H 4 HOH A 2 4 4 HOH HOH . H 4 HOH A 3 5 5 HOH HOH . H 4 HOH A 4 6 6 HOH HOH . H 4 HOH A 5 7 7 HOH HOH . H 4 HOH A 6 8 8 HOH HOH . H 4 HOH A 7 10 10 HOH HOH . H 4 HOH A 8 11 11 HOH HOH . H 4 HOH A 9 13 13 HOH HOH . H 4 HOH A 10 14 14 HOH HOH . H 4 HOH A 11 15 15 HOH HOH . H 4 HOH A 12 17 17 HOH HOH . H 4 HOH A 13 18 18 HOH HOH . H 4 HOH A 14 20 20 HOH HOH . H 4 HOH A 15 21 21 HOH HOH . H 4 HOH A 16 22 22 HOH HOH . H 4 HOH A 17 27 27 HOH HOH . H 4 HOH A 18 30 30 HOH HOH . H 4 HOH A 19 33 33 HOH HOH . H 4 HOH A 20 34 34 HOH HOH . H 4 HOH A 21 38 38 HOH HOH . H 4 HOH A 22 39 39 HOH HOH . H 4 HOH A 23 40 40 HOH HOH . H 4 HOH A 24 41 41 HOH HOH . H 4 HOH A 25 42 42 HOH HOH . H 4 HOH A 26 43 43 HOH HOH . H 4 HOH A 27 44 44 HOH HOH . H 4 HOH A 28 45 45 HOH HOH . H 4 HOH A 29 50 50 HOH HOH . H 4 HOH A 30 53 53 HOH HOH . H 4 HOH A 31 54 54 HOH HOH . H 4 HOH A 32 55 55 HOH HOH . H 4 HOH A 33 58 58 HOH HOH . H 4 HOH A 34 61 61 HOH HOH . H 4 HOH A 35 63 63 HOH HOH . H 4 HOH A 36 64 64 HOH HOH . H 4 HOH A 37 66 66 HOH HOH . H 4 HOH A 38 67 67 HOH HOH . H 4 HOH A 39 68 68 HOH HOH . H 4 HOH A 40 69 69 HOH HOH . H 4 HOH A 41 70 70 HOH HOH . H 4 HOH A 42 71 71 HOH HOH . H 4 HOH A 43 72 72 HOH HOH . H 4 HOH A 44 73 73 HOH HOH . H 4 HOH A 45 75 75 HOH HOH . H 4 HOH A 46 77 77 HOH HOH . H 4 HOH A 47 78 78 HOH HOH . H 4 HOH A 48 79 79 HOH HOH . H 4 HOH A 49 81 81 HOH HOH . H 4 HOH A 50 82 82 HOH HOH . H 4 HOH A 51 83 83 HOH HOH . H 4 HOH A 52 84 84 HOH HOH . H 4 HOH A 53 86 86 HOH HOH . H 4 HOH A 54 87 87 HOH HOH . H 4 HOH A 55 89 89 HOH HOH . H 4 HOH A 56 92 92 HOH HOH . H 4 HOH A 57 94 94 HOH HOH . H 4 HOH A 58 95 95 HOH HOH . H 4 HOH A 59 96 96 HOH HOH . H 4 HOH A 60 97 97 HOH HOH . H 4 HOH A 61 98 98 HOH HOH . H 4 HOH A 62 102 102 HOH HOH . H 4 HOH A 63 103 103 HOH HOH . H 4 HOH A 64 106 106 HOH HOH . H 4 HOH A 65 107 107 HOH HOH . H 4 HOH A 66 109 109 HOH HOH . H 4 HOH A 67 111 111 HOH HOH . H 4 HOH A 68 112 112 HOH HOH . H 4 HOH A 69 113 113 HOH HOH . H 4 HOH A 70 114 114 HOH HOH . H 4 HOH A 71 115 115 HOH HOH . H 4 HOH A 72 116 116 HOH HOH . H 4 HOH A 73 117 117 HOH HOH . H 4 HOH A 74 118 118 HOH HOH . H 4 HOH A 75 119 119 HOH HOH . H 4 HOH A 76 120 120 HOH HOH . H 4 HOH A 77 121 121 HOH HOH . H 4 HOH A 78 123 123 HOH HOH . H 4 HOH A 79 125 125 HOH HOH . H 4 HOH A 80 126 126 HOH HOH . H 4 HOH A 81 128 128 HOH HOH . H 4 HOH A 82 130 130 HOH HOH . H 4 HOH A 83 132 132 HOH HOH . H 4 HOH A 84 133 133 HOH HOH . H 4 HOH A 85 134 134 HOH HOH . H 4 HOH A 86 136 136 HOH HOH . H 4 HOH A 87 137 137 HOH HOH . H 4 HOH A 88 138 138 HOH HOH . H 4 HOH A 89 140 140 HOH HOH . H 4 HOH A 90 141 141 HOH HOH . H 4 HOH A 91 348 1 HOH HOH . H 4 HOH A 92 349 143 HOH HOH . H 4 HOH A 93 350 144 HOH HOH . H 4 HOH A 94 351 145 HOH HOH . H 4 HOH A 95 352 146 HOH HOH . H 4 HOH A 96 353 147 HOH HOH . H 4 HOH A 97 354 149 HOH HOH . H 4 HOH A 98 355 152 HOH HOH . H 4 HOH A 99 356 156 HOH HOH . H 4 HOH A 100 357 157 HOH HOH . H 4 HOH A 101 358 158 HOH HOH . H 4 HOH A 102 359 160 HOH HOH . H 4 HOH A 103 360 161 HOH HOH . H 4 HOH A 104 361 163 HOH HOH . H 4 HOH A 105 362 164 HOH HOH . H 4 HOH A 106 363 165 HOH HOH . H 4 HOH A 107 364 168 HOH HOH . H 4 HOH A 108 365 170 HOH HOH . H 4 HOH A 109 366 171 HOH HOH . H 4 HOH A 110 367 172 HOH HOH . H 4 HOH A 111 368 174 HOH HOH . H 4 HOH A 112 369 175 HOH HOH . H 4 HOH A 113 370 176 HOH HOH . H 4 HOH A 114 371 177 HOH HOH . H 4 HOH A 115 372 178 HOH HOH . H 4 HOH A 116 373 180 HOH HOH . H 4 HOH A 117 374 181 HOH HOH . H 4 HOH A 118 375 184 HOH HOH . H 4 HOH A 119 376 186 HOH HOH . H 4 HOH A 120 377 188 HOH HOH . H 4 HOH A 121 378 189 HOH HOH . H 4 HOH A 122 379 190 HOH HOH . H 4 HOH A 123 380 191 HOH HOH . H 4 HOH A 124 381 192 HOH HOH . H 4 HOH A 125 382 193 HOH HOH . H 4 HOH A 126 383 194 HOH HOH . H 4 HOH A 127 384 195 HOH HOH . H 4 HOH A 128 385 196 HOH HOH . H 4 HOH A 129 386 197 HOH HOH . H 4 HOH A 130 387 198 HOH HOH . H 4 HOH A 131 388 200 HOH HOH . H 4 HOH A 132 389 201 HOH HOH . H 4 HOH A 133 390 203 HOH HOH . H 4 HOH A 134 391 205 HOH HOH . H 4 HOH A 135 392 207 HOH HOH . H 4 HOH A 136 393 208 HOH HOH . H 4 HOH A 137 394 209 HOH HOH . H 4 HOH A 138 395 211 HOH HOH . H 4 HOH A 139 396 214 HOH HOH . H 4 HOH A 140 397 215 HOH HOH . H 4 HOH A 141 398 216 HOH HOH . H 4 HOH A 142 399 217 HOH HOH . H 4 HOH A 143 401 219 HOH HOH . H 4 HOH A 144 402 220 HOH HOH . H 4 HOH A 145 403 221 HOH HOH . H 4 HOH A 146 404 222 HOH HOH . H 4 HOH A 147 405 223 HOH HOH . H 4 HOH A 148 406 226 HOH HOH . H 4 HOH A 149 407 227 HOH HOH . H 4 HOH A 150 408 228 HOH HOH . H 4 HOH A 151 409 229 HOH HOH . H 4 HOH A 152 410 230 HOH HOH . H 4 HOH A 153 411 233 HOH HOH . H 4 HOH A 154 412 234 HOH HOH . H 4 HOH A 155 413 236 HOH HOH . H 4 HOH A 156 414 237 HOH HOH . H 4 HOH A 157 415 238 HOH HOH . H 4 HOH A 158 416 240 HOH HOH . H 4 HOH A 159 417 241 HOH HOH . H 4 HOH A 160 418 247 HOH HOH . H 4 HOH A 161 419 248 HOH HOH . H 4 HOH A 162 420 249 HOH HOH . H 4 HOH A 163 421 251 HOH HOH . H 4 HOH A 164 422 252 HOH HOH . H 4 HOH A 165 423 254 HOH HOH . H 4 HOH A 166 424 256 HOH HOH . H 4 HOH A 167 425 257 HOH HOH . H 4 HOH A 168 426 259 HOH HOH . H 4 HOH A 169 427 260 HOH HOH . H 4 HOH A 170 428 261 HOH HOH . H 4 HOH A 171 429 262 HOH HOH . H 4 HOH A 172 430 263 HOH HOH . H 4 HOH A 173 431 264 HOH HOH . H 4 HOH A 174 432 267 HOH HOH . H 4 HOH A 175 433 270 HOH HOH . H 4 HOH A 176 434 271 HOH HOH . H 4 HOH A 177 435 273 HOH HOH . H 4 HOH A 178 436 274 HOH HOH . H 4 HOH A 179 437 275 HOH HOH . H 4 HOH A 180 438 276 HOH HOH . H 4 HOH A 181 439 277 HOH HOH . H 4 HOH A 182 440 278 HOH HOH . H 4 HOH A 183 441 279 HOH HOH . H 4 HOH A 184 442 280 HOH HOH . H 4 HOH A 185 443 281 HOH HOH . H 4 HOH A 186 444 282 HOH HOH . H 4 HOH A 187 445 283 HOH HOH . H 4 HOH A 188 446 284 HOH HOH . H 4 HOH A 189 447 285 HOH HOH . H 4 HOH A 190 448 286 HOH HOH . H 4 HOH A 191 449 245 HOH HOH . I 4 HOH B 1 3 3 HOH HOH . I 4 HOH B 2 9 9 HOH HOH . I 4 HOH B 3 12 12 HOH HOH . I 4 HOH B 4 16 16 HOH HOH . I 4 HOH B 5 19 19 HOH HOH . I 4 HOH B 6 23 23 HOH HOH . I 4 HOH B 7 24 24 HOH HOH . I 4 HOH B 8 25 25 HOH HOH . I 4 HOH B 9 26 26 HOH HOH . I 4 HOH B 10 28 28 HOH HOH . I 4 HOH B 11 29 29 HOH HOH . I 4 HOH B 12 31 31 HOH HOH . I 4 HOH B 13 32 32 HOH HOH . I 4 HOH B 14 35 35 HOH HOH . I 4 HOH B 15 36 36 HOH HOH . I 4 HOH B 16 37 37 HOH HOH . I 4 HOH B 17 46 46 HOH HOH . I 4 HOH B 18 47 47 HOH HOH . I 4 HOH B 19 48 48 HOH HOH . I 4 HOH B 20 49 49 HOH HOH . I 4 HOH B 21 51 51 HOH HOH . I 4 HOH B 22 52 52 HOH HOH . I 4 HOH B 23 56 56 HOH HOH . I 4 HOH B 24 57 57 HOH HOH . I 4 HOH B 25 59 59 HOH HOH . I 4 HOH B 26 60 60 HOH HOH . I 4 HOH B 27 62 62 HOH HOH . I 4 HOH B 28 65 65 HOH HOH . I 4 HOH B 29 74 74 HOH HOH . I 4 HOH B 30 76 76 HOH HOH . I 4 HOH B 31 80 80 HOH HOH . I 4 HOH B 32 85 85 HOH HOH . I 4 HOH B 33 88 88 HOH HOH . I 4 HOH B 34 90 90 HOH HOH . I 4 HOH B 35 91 91 HOH HOH . I 4 HOH B 36 93 93 HOH HOH . I 4 HOH B 37 99 99 HOH HOH . I 4 HOH B 38 100 100 HOH HOH . I 4 HOH B 39 101 101 HOH HOH . I 4 HOH B 40 104 104 HOH HOH . I 4 HOH B 41 105 105 HOH HOH . I 4 HOH B 42 108 108 HOH HOH . I 4 HOH B 43 110 110 HOH HOH . I 4 HOH B 44 122 122 HOH HOH . I 4 HOH B 45 124 124 HOH HOH . I 4 HOH B 46 127 127 HOH HOH . I 4 HOH B 47 129 129 HOH HOH . I 4 HOH B 48 131 131 HOH HOH . I 4 HOH B 49 135 135 HOH HOH . I 4 HOH B 50 139 139 HOH HOH . I 4 HOH B 51 348 142 HOH HOH . I 4 HOH B 52 349 148 HOH HOH . I 4 HOH B 53 350 150 HOH HOH . I 4 HOH B 54 351 151 HOH HOH . I 4 HOH B 55 352 153 HOH HOH . I 4 HOH B 56 353 154 HOH HOH . I 4 HOH B 57 354 155 HOH HOH . I 4 HOH B 58 355 159 HOH HOH . I 4 HOH B 59 356 162 HOH HOH . I 4 HOH B 60 357 166 HOH HOH . I 4 HOH B 61 358 167 HOH HOH . I 4 HOH B 62 359 169 HOH HOH . I 4 HOH B 63 360 173 HOH HOH . I 4 HOH B 64 361 179 HOH HOH . I 4 HOH B 65 362 182 HOH HOH . I 4 HOH B 66 363 183 HOH HOH . I 4 HOH B 67 364 185 HOH HOH . I 4 HOH B 68 365 187 HOH HOH . I 4 HOH B 69 366 199 HOH HOH . I 4 HOH B 70 367 202 HOH HOH . I 4 HOH B 71 368 204 HOH HOH . I 4 HOH B 72 369 206 HOH HOH . I 4 HOH B 73 370 210 HOH HOH . I 4 HOH B 74 371 212 HOH HOH . I 4 HOH B 75 372 213 HOH HOH . I 4 HOH B 76 373 218 HOH HOH . I 4 HOH B 77 374 224 HOH HOH . I 4 HOH B 78 375 225 HOH HOH . I 4 HOH B 79 376 231 HOH HOH . I 4 HOH B 80 377 232 HOH HOH . I 4 HOH B 81 378 235 HOH HOH . I 4 HOH B 82 379 239 HOH HOH . I 4 HOH B 83 380 242 HOH HOH . I 4 HOH B 84 381 243 HOH HOH . I 4 HOH B 85 382 244 HOH HOH . I 4 HOH B 86 384 246 HOH HOH . I 4 HOH B 87 385 250 HOH HOH . I 4 HOH B 88 386 253 HOH HOH . I 4 HOH B 89 387 255 HOH HOH . I 4 HOH B 90 388 258 HOH HOH . I 4 HOH B 91 389 265 HOH HOH . I 4 HOH B 92 390 266 HOH HOH . I 4 HOH B 93 391 268 HOH HOH . I 4 HOH B 94 392 269 HOH HOH . I 4 HOH B 95 393 272 HOH HOH . I 4 HOH B 96 394 287 HOH HOH . I 4 HOH B 97 395 288 HOH HOH . I 4 HOH B 98 396 289 HOH HOH . I 4 HOH B 99 397 290 HOH HOH . I 4 HOH B 100 398 291 HOH HOH . I 4 HOH B 101 399 292 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 37.37 _atom_site.Cartn_y -0.097 _atom_site.Cartn_z -7.608 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #