data_3I5G
#
_model_server_result.job_id            px_kHZkcMK8bNzeXUzQgvg 
_model_server_result.datetime_utc      '2024-12-26 21:30:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i5g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    3I5G 
#
_exptl.entry_id    3I5G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.74 
_cell.angle_gamma         90 
_cell.entry_id            3I5G 
_cell.length_a            194.138 
_cell.length_b            101.751 
_cell.length_c            80.651 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3I5G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O ASP 19 C ASP 19 1_555 E CA CA . C CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc2 C OD1 ASP 22 C ASP 22 1_555 E CA CA . C CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc3 C O GLY 23 C GLY 23 1_555 E CA CA . C CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc4 C OD1 ASP 25 C ASP 25 1_555 E CA CA . C CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc5 C O ASP 27 C ASP 27 1_555 E CA CA . C CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 237 n n 
C1 C3 MLI sing 238 n n 
C1 H11 MLI sing 239 n n 
C1 H12 MLI sing 240 n n 
C2 O6 MLI doub 241 n n 
C2 O7 MLI sing 242 n n 
C3 O8 MLI doub 243 n n 
C3 O9 MLI sing 244 n n 
#
_atom_sites.entry_id                     3I5G 
_atom_sites.fract_transf_matrix[1][1]    0.005151 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001452 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009828 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MLI A 1 1001 1001 MLI MLI . 
E 5 CA C 1 1001 1001 CA CA . 
F 6 HOH A 1 1002 1002 HOH HOH . 
F 6 HOH A 2 1010 1010 HOH HOH . 
F 6 HOH A 3 1031 1031 HOH HOH . 
F 6 HOH A 4 1032 1032 HOH HOH . 
F 6 HOH A 5 1033 1033 HOH HOH . 
F 6 HOH A 6 1034 1034 HOH HOH . 
F 6 HOH A 7 1035 1035 HOH HOH . 
F 6 HOH A 8 1036 1036 HOH HOH . 
F 6 HOH A 9 1037 1037 HOH HOH . 
F 6 HOH A 10 1038 1038 HOH HOH . 
F 6 HOH A 11 1039 1039 HOH HOH . 
F 6 HOH A 12 1040 1040 HOH HOH . 
F 6 HOH A 13 1041 1041 HOH HOH . 
F 6 HOH A 14 1042 1042 HOH HOH . 
F 6 HOH A 15 1043 1043 HOH HOH . 
F 6 HOH A 16 1044 1044 HOH HOH . 
F 6 HOH A 17 1045 1045 HOH HOH . 
F 6 HOH A 18 1046 1046 HOH HOH . 
F 6 HOH A 19 1047 1047 HOH HOH . 
F 6 HOH A 20 1048 1048 HOH HOH . 
F 6 HOH A 21 1049 1049 HOH HOH . 
F 6 HOH A 22 1050 1050 HOH HOH . 
F 6 HOH A 23 1051 1051 HOH HOH . 
F 6 HOH A 24 1052 1052 HOH HOH . 
F 6 HOH A 25 1053 1053 HOH HOH . 
F 6 HOH A 26 1054 1054 HOH HOH . 
F 6 HOH A 27 1055 1055 HOH HOH . 
F 6 HOH A 28 1056 1056 HOH HOH . 
F 6 HOH A 29 1057 1057 HOH HOH . 
F 6 HOH A 30 1058 1058 HOH HOH . 
F 6 HOH A 31 1059 1059 HOH HOH . 
F 6 HOH A 32 1060 1060 HOH HOH . 
F 6 HOH A 33 1062 1062 HOH HOH . 
F 6 HOH A 34 1063 1063 HOH HOH . 
F 6 HOH A 35 1064 1064 HOH HOH . 
F 6 HOH A 36 1065 1065 HOH HOH . 
F 6 HOH A 37 1066 1066 HOH HOH . 
F 6 HOH A 38 1067 1067 HOH HOH . 
F 6 HOH A 39 1068 1068 HOH HOH . 
F 6 HOH A 40 1069 1069 HOH HOH . 
F 6 HOH A 41 1070 1070 HOH HOH . 
F 6 HOH A 42 1071 1071 HOH HOH . 
F 6 HOH A 43 1072 1072 HOH HOH . 
F 6 HOH A 44 1073 1073 HOH HOH . 
F 6 HOH A 45 1074 1074 HOH HOH . 
F 6 HOH A 46 1075 1075 HOH HOH . 
F 6 HOH A 47 1076 1076 HOH HOH . 
F 6 HOH A 48 1077 1077 HOH HOH . 
F 6 HOH A 49 1078 1078 HOH HOH . 
F 6 HOH A 50 1079 1079 HOH HOH . 
F 6 HOH A 51 1080 1080 HOH HOH . 
G 6 HOH C 1 1003 1003 HOH HOH . 
G 6 HOH C 2 1004 1004 HOH HOH . 
G 6 HOH C 3 1005 1005 HOH HOH . 
G 6 HOH C 4 1006 1006 HOH HOH . 
G 6 HOH C 5 1007 1007 HOH HOH . 
G 6 HOH C 6 1008 1008 HOH HOH . 
G 6 HOH C 7 1009 1009 HOH HOH . 
G 6 HOH C 8 1011 1011 HOH HOH . 
G 6 HOH C 9 1012 1012 HOH HOH . 
G 6 HOH C 10 1013 1013 HOH HOH . 
G 6 HOH C 11 1014 1014 HOH HOH . 
G 6 HOH C 12 1015 1015 HOH HOH . 
G 6 HOH C 13 1016 1016 HOH HOH . 
G 6 HOH C 14 1017 1017 HOH HOH . 
G 6 HOH C 15 1018 1018 HOH HOH . 
G 6 HOH C 16 1019 1019 HOH HOH . 
G 6 HOH C 17 1020 1020 HOH HOH . 
G 6 HOH C 18 1021 1021 HOH HOH . 
G 6 HOH C 19 1022 1022 HOH HOH . 
G 6 HOH C 20 1023 1023 HOH HOH . 
G 6 HOH C 21 1024 1024 HOH HOH . 
G 6 HOH C 22 1025 1025 HOH HOH . 
G 6 HOH C 23 1026 1026 HOH HOH . 
G 6 HOH C 24 1027 1027 HOH HOH . 
G 6 HOH C 25 1028 1028 HOH HOH . 
G 6 HOH C 26 1029 1029 HOH HOH . 
G 6 HOH C 27 1030 1030 HOH HOH . 
G 6 HOH C 28 1061 1061 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . D 4 -35.107 -8.183 19.606 1 48.7 ? C1 MLI 1001 A 1 
HETATM 2 C C2 MLI . . . D 4 -34.404 -7.934 20.966 1 47.76 ? C2 MLI 1001 A 1 
HETATM 3 C C3 MLI . . . D 4 -35.406 -7.002 18.73 1 51.13 ? C3 MLI 1001 A 1 
HETATM 4 O O6 MLI . . . D 4 -33.181 -7.738 21.141 1 48.11 ? O6 MLI 1001 A 1 
HETATM 5 O O7 MLI . . . D 4 -35.151 -7.962 21.978 1 44.44 ? O7 MLI 1001 A 1 
HETATM 6 O O8 MLI . . . D 4 -34.422 -6.274 18.392 1 48.51 ? O8 MLI 1001 A 1 
HETATM 7 O O9 MLI . . . D 4 -36.601 -6.959 18.453 1 53.02 ? O9 MLI 1001 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#