data_3I5U # _model_server_result.job_id B0MRZbmo51q45xITRM6mAg _model_server_result.datetime_utc '2024-11-27 00:47:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":404}' # _entry.id 3I5U # _exptl.entry_id 3I5U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I5U _cell.length_a 109.083 _cell.length_b 109.083 _cell.length_c 206.884 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 155 n n C1 C2 GOL sing 156 n n C1 H11 GOL sing 157 n n C1 H12 GOL sing 158 n n O1 HO1 GOL sing 159 n n C2 O2 GOL sing 160 n n C2 C3 GOL sing 161 n n C2 H2 GOL sing 162 n n O2 HO2 GOL sing 163 n n C3 O3 GOL sing 164 n n C3 H31 GOL sing 165 n n C3 H32 GOL sing 166 n n O3 HO3 GOL sing 167 n n # _atom_sites.entry_id 3I5U _atom_sites.fract_transf_matrix[1][1] 0.009167 _atom_sites.fract_transf_matrix[1][2] 0.005293 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 401 1 SAM SAM . D 3 5NA A 1 402 3 5NA MNA . E 4 GOL A 1 403 6 GOL GOL . F 2 SAM B 1 401 2 SAM SAM . G 3 5NA B 1 402 4 5NA MNA . H 4 GOL B 1 404 5 GOL GOL . I 5 HOH A 1 501 1 HOH HOH . I 5 HOH A 2 502 2 HOH HOH . I 5 HOH A 3 503 3 HOH HOH . I 5 HOH A 4 504 4 HOH HOH . I 5 HOH A 5 505 5 HOH HOH . I 5 HOH A 6 506 6 HOH HOH . I 5 HOH A 7 509 9 HOH HOH . I 5 HOH A 8 510 10 HOH HOH . I 5 HOH A 9 511 11 HOH HOH . I 5 HOH A 10 512 12 HOH HOH . I 5 HOH A 11 516 16 HOH HOH . I 5 HOH A 12 522 22 HOH HOH . I 5 HOH A 13 523 23 HOH HOH . I 5 HOH A 14 525 25 HOH HOH . I 5 HOH A 15 530 30 HOH HOH . I 5 HOH A 16 535 35 HOH HOH . I 5 HOH A 17 538 38 HOH HOH . I 5 HOH A 18 540 40 HOH HOH . I 5 HOH A 19 543 43 HOH HOH . I 5 HOH A 20 545 45 HOH HOH . I 5 HOH A 21 548 48 HOH HOH . I 5 HOH A 22 549 49 HOH HOH . I 5 HOH A 23 550 50 HOH HOH . I 5 HOH A 24 551 51 HOH HOH . I 5 HOH A 25 552 52 HOH HOH . I 5 HOH A 26 557 57 HOH HOH . I 5 HOH A 27 559 59 HOH HOH . I 5 HOH A 28 560 60 HOH HOH . I 5 HOH A 29 564 64 HOH HOH . I 5 HOH A 30 565 65 HOH HOH . I 5 HOH A 31 566 66 HOH HOH . I 5 HOH A 32 567 67 HOH HOH . I 5 HOH A 33 570 70 HOH HOH . I 5 HOH A 34 571 71 HOH HOH . I 5 HOH A 35 576 76 HOH HOH . I 5 HOH A 36 580 80 HOH HOH . I 5 HOH A 37 581 81 HOH HOH . I 5 HOH A 38 582 82 HOH HOH . I 5 HOH A 39 583 83 HOH HOH . I 5 HOH A 40 586 86 HOH HOH . I 5 HOH A 41 588 88 HOH HOH . I 5 HOH A 42 589 89 HOH HOH . I 5 HOH A 43 591 91 HOH HOH . I 5 HOH A 44 592 92 HOH HOH . I 5 HOH A 45 593 93 HOH HOH . I 5 HOH A 46 594 94 HOH HOH . I 5 HOH A 47 596 96 HOH HOH . I 5 HOH A 48 597 97 HOH HOH . I 5 HOH A 49 598 98 HOH HOH . I 5 HOH A 50 599 99 HOH HOH . I 5 HOH A 51 600 100 HOH HOH . I 5 HOH A 52 601 101 HOH HOH . I 5 HOH A 53 602 102 HOH HOH . I 5 HOH A 54 606 106 HOH HOH . I 5 HOH A 55 610 110 HOH HOH . I 5 HOH A 56 617 117 HOH HOH . I 5 HOH A 57 618 118 HOH HOH . I 5 HOH A 58 620 120 HOH HOH . I 5 HOH A 59 621 121 HOH HOH . I 5 HOH A 60 622 122 HOH HOH . I 5 HOH A 61 623 123 HOH HOH . I 5 HOH A 62 624 124 HOH HOH . I 5 HOH A 63 626 126 HOH HOH . I 5 HOH A 64 627 127 HOH HOH . I 5 HOH A 65 628 128 HOH HOH . I 5 HOH A 66 630 130 HOH HOH . I 5 HOH A 67 631 131 HOH HOH . I 5 HOH A 68 633 133 HOH HOH . I 5 HOH A 69 635 135 HOH HOH . I 5 HOH A 70 637 137 HOH HOH . I 5 HOH A 71 639 139 HOH HOH . I 5 HOH A 72 641 141 HOH HOH . I 5 HOH A 73 645 145 HOH HOH . I 5 HOH A 74 646 146 HOH HOH . I 5 HOH A 75 647 147 HOH HOH . I 5 HOH A 76 648 148 HOH HOH . I 5 HOH A 77 649 149 HOH HOH . I 5 HOH A 78 651 151 HOH HOH . I 5 HOH A 79 653 153 HOH HOH . I 5 HOH A 80 656 156 HOH HOH . I 5 HOH A 81 659 159 HOH HOH . I 5 HOH A 82 660 160 HOH HOH . I 5 HOH A 83 662 162 HOH HOH . I 5 HOH A 84 664 164 HOH HOH . I 5 HOH A 85 666 166 HOH HOH . I 5 HOH A 86 668 168 HOH HOH . I 5 HOH A 87 672 172 HOH HOH . I 5 HOH A 88 674 174 HOH HOH . I 5 HOH A 89 675 175 HOH HOH . I 5 HOH A 90 676 176 HOH HOH . I 5 HOH A 91 677 177 HOH HOH . I 5 HOH A 92 680 180 HOH HOH . I 5 HOH A 93 681 181 HOH HOH . I 5 HOH A 94 682 182 HOH HOH . I 5 HOH A 95 683 183 HOH HOH . I 5 HOH A 96 686 186 HOH HOH . I 5 HOH A 97 687 187 HOH HOH . I 5 HOH A 98 688 188 HOH HOH . I 5 HOH A 99 689 189 HOH HOH . I 5 HOH A 100 694 194 HOH HOH . I 5 HOH A 101 695 195 HOH HOH . I 5 HOH A 102 697 197 HOH HOH . I 5 HOH A 103 698 198 HOH HOH . I 5 HOH A 104 699 199 HOH HOH . I 5 HOH A 105 704 204 HOH HOH . I 5 HOH A 106 708 208 HOH HOH . I 5 HOH A 107 709 209 HOH HOH . I 5 HOH A 108 710 210 HOH HOH . I 5 HOH A 109 712 212 HOH HOH . I 5 HOH A 110 713 213 HOH HOH . I 5 HOH A 111 714 214 HOH HOH . I 5 HOH A 112 716 216 HOH HOH . I 5 HOH A 113 719 219 HOH HOH . I 5 HOH A 114 720 220 HOH HOH . I 5 HOH A 115 723 223 HOH HOH . I 5 HOH A 116 724 224 HOH HOH . I 5 HOH A 117 725 225 HOH HOH . I 5 HOH A 118 726 226 HOH HOH . I 5 HOH A 119 727 227 HOH HOH . I 5 HOH A 120 729 229 HOH HOH . I 5 HOH A 121 731 231 HOH HOH . I 5 HOH A 122 733 233 HOH HOH . I 5 HOH A 123 736 236 HOH HOH . I 5 HOH A 124 737 237 HOH HOH . I 5 HOH A 125 738 238 HOH HOH . I 5 HOH A 126 739 239 HOH HOH . I 5 HOH A 127 740 240 HOH HOH . I 5 HOH A 128 743 243 HOH HOH . I 5 HOH A 129 745 245 HOH HOH . I 5 HOH A 130 749 249 HOH HOH . J 5 HOH B 1 507 7 HOH HOH . J 5 HOH B 2 508 8 HOH HOH . J 5 HOH B 3 513 13 HOH HOH . J 5 HOH B 4 514 14 HOH HOH . J 5 HOH B 5 515 15 HOH HOH . J 5 HOH B 6 517 17 HOH HOH . J 5 HOH B 7 518 18 HOH HOH . J 5 HOH B 8 519 19 HOH HOH . J 5 HOH B 9 520 20 HOH HOH . J 5 HOH B 10 521 21 HOH HOH . J 5 HOH B 11 524 24 HOH HOH . J 5 HOH B 12 526 26 HOH HOH . J 5 HOH B 13 527 27 HOH HOH . J 5 HOH B 14 528 28 HOH HOH . J 5 HOH B 15 529 29 HOH HOH . J 5 HOH B 16 531 31 HOH HOH . J 5 HOH B 17 532 32 HOH HOH . J 5 HOH B 18 533 33 HOH HOH . J 5 HOH B 19 534 34 HOH HOH . J 5 HOH B 20 536 36 HOH HOH . J 5 HOH B 21 537 37 HOH HOH . J 5 HOH B 22 539 39 HOH HOH . J 5 HOH B 23 541 41 HOH HOH . J 5 HOH B 24 542 42 HOH HOH . J 5 HOH B 25 544 44 HOH HOH . J 5 HOH B 26 546 46 HOH HOH . J 5 HOH B 27 547 47 HOH HOH . J 5 HOH B 28 553 53 HOH HOH . J 5 HOH B 29 554 54 HOH HOH . J 5 HOH B 30 555 55 HOH HOH . J 5 HOH B 31 556 56 HOH HOH . J 5 HOH B 32 558 58 HOH HOH . J 5 HOH B 33 561 61 HOH HOH . J 5 HOH B 34 562 62 HOH HOH . J 5 HOH B 35 563 63 HOH HOH . J 5 HOH B 36 568 68 HOH HOH . J 5 HOH B 37 569 69 HOH HOH . J 5 HOH B 38 572 72 HOH HOH . J 5 HOH B 39 573 73 HOH HOH . J 5 HOH B 40 574 74 HOH HOH . J 5 HOH B 41 575 75 HOH HOH . J 5 HOH B 42 577 77 HOH HOH . J 5 HOH B 43 578 78 HOH HOH . J 5 HOH B 44 579 79 HOH HOH . J 5 HOH B 45 584 84 HOH HOH . J 5 HOH B 46 585 85 HOH HOH . J 5 HOH B 47 587 87 HOH HOH . J 5 HOH B 48 590 90 HOH HOH . J 5 HOH B 49 595 95 HOH HOH . J 5 HOH B 50 603 103 HOH HOH . J 5 HOH B 51 604 104 HOH HOH . J 5 HOH B 52 605 105 HOH HOH . J 5 HOH B 53 607 107 HOH HOH . J 5 HOH B 54 608 108 HOH HOH . J 5 HOH B 55 609 109 HOH HOH . J 5 HOH B 56 611 111 HOH HOH . J 5 HOH B 57 612 112 HOH HOH . J 5 HOH B 58 613 113 HOH HOH . J 5 HOH B 59 614 114 HOH HOH . J 5 HOH B 60 615 115 HOH HOH . J 5 HOH B 61 616 116 HOH HOH . J 5 HOH B 62 619 119 HOH HOH . J 5 HOH B 63 625 125 HOH HOH . J 5 HOH B 64 629 129 HOH HOH . J 5 HOH B 65 632 132 HOH HOH . J 5 HOH B 66 634 134 HOH HOH . J 5 HOH B 67 636 136 HOH HOH . J 5 HOH B 68 638 138 HOH HOH . J 5 HOH B 69 640 140 HOH HOH . J 5 HOH B 70 642 142 HOH HOH . J 5 HOH B 71 643 143 HOH HOH . J 5 HOH B 72 644 144 HOH HOH . J 5 HOH B 73 650 150 HOH HOH . J 5 HOH B 74 652 152 HOH HOH . J 5 HOH B 75 654 154 HOH HOH . J 5 HOH B 76 655 155 HOH HOH . J 5 HOH B 77 657 157 HOH HOH . J 5 HOH B 78 658 158 HOH HOH . J 5 HOH B 79 661 161 HOH HOH . J 5 HOH B 80 663 163 HOH HOH . J 5 HOH B 81 665 165 HOH HOH . J 5 HOH B 82 667 167 HOH HOH . J 5 HOH B 83 669 169 HOH HOH . J 5 HOH B 84 670 170 HOH HOH . J 5 HOH B 85 671 171 HOH HOH . J 5 HOH B 86 673 173 HOH HOH . J 5 HOH B 87 678 178 HOH HOH . J 5 HOH B 88 679 179 HOH HOH . J 5 HOH B 89 684 184 HOH HOH . J 5 HOH B 90 685 185 HOH HOH . J 5 HOH B 91 690 190 HOH HOH . J 5 HOH B 92 691 191 HOH HOH . J 5 HOH B 93 692 192 HOH HOH . J 5 HOH B 94 693 193 HOH HOH . J 5 HOH B 95 696 196 HOH HOH . J 5 HOH B 96 700 200 HOH HOH . J 5 HOH B 97 701 201 HOH HOH . J 5 HOH B 98 702 202 HOH HOH . J 5 HOH B 99 703 203 HOH HOH . J 5 HOH B 100 705 205 HOH HOH . J 5 HOH B 101 706 206 HOH HOH . J 5 HOH B 102 707 207 HOH HOH . J 5 HOH B 103 711 211 HOH HOH . J 5 HOH B 104 715 215 HOH HOH . J 5 HOH B 105 717 217 HOH HOH . J 5 HOH B 106 718 218 HOH HOH . J 5 HOH B 107 721 221 HOH HOH . J 5 HOH B 108 722 222 HOH HOH . J 5 HOH B 109 728 228 HOH HOH . J 5 HOH B 110 730 230 HOH HOH . J 5 HOH B 111 732 232 HOH HOH . J 5 HOH B 112 734 234 HOH HOH . J 5 HOH B 113 735 235 HOH HOH . J 5 HOH B 114 741 241 HOH HOH . J 5 HOH B 115 742 242 HOH HOH . J 5 HOH B 116 744 244 HOH HOH . J 5 HOH B 117 746 246 HOH HOH . J 5 HOH B 118 747 247 HOH HOH . J 5 HOH B 119 748 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 42.304 -47.356 -22.496 1 94.69 ? C1 GOL 404 B 1 HETATM 2 O O1 GOL . . . H 4 42.554 -46.685 -21.257 1 93.88 ? O1 GOL 404 B 1 HETATM 3 C C2 GOL . . . H 4 40.791 -47.514 -22.704 1 95.63 ? C2 GOL 404 B 1 HETATM 4 O O2 GOL . . . H 4 40.157 -46.22 -22.716 1 95.09 ? O2 GOL 404 B 1 HETATM 5 C C3 GOL . . . H 4 40.532 -48.239 -24.03 1 95.65 ? C3 GOL 404 B 1 HETATM 6 O O3 GOL . . . H 4 39.124 -48.391 -24.233 1 95.66 ? O3 GOL 404 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #