data_3I5V # _model_server_result.job_id 1yqiA-6ZafvI48Xqt4YTvQ _model_server_result.datetime_utc '2024-11-16 13:33:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 3I5V # _exptl.entry_id 3I5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 625.018 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIACYL GLYCEROL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.06 _cell.angle_beta 94.6 _cell.angle_gamma 92.13 _cell.entry_id 3I5V _cell.length_a 55.184 _cell.length_b 69.053 _cell.length_c 75.654 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F 1 1 B,G 2 1 C,H 3 1 D,E,I 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 142 A CYS 122 1_555 A SG CYS 178 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 142 B CYS 122 1_555 B SG CYS 178 B CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 C SG CYS 142 C CYS 122 1_555 C SG CYS 178 C CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 D SG CYS 142 D CYS 122 1_555 D SG CYS 178 D CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C39 H76 O5' _chem_comp.formula_weight 625.018 _chem_comp.id DGA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIACYL GLYCEROL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CA2 DGA sing 83 n n CA1 OA1 DGA doub 84 n n CA1 OG1 DGA sing 85 n n CA2 CA3 DGA sing 86 n n CA2 HA21 DGA sing 87 n n CA2 HA22 DGA sing 88 n n CA3 CA4 DGA sing 89 n n CA3 HA31 DGA sing 90 n n CA3 HA32 DGA sing 91 n n CA4 CA5 DGA sing 92 n n CA4 HA41 DGA sing 93 n n CA4 HA42 DGA sing 94 n n CA5 CA6 DGA sing 95 n n CA5 HA51 DGA sing 96 n n CA5 HA52 DGA sing 97 n n CA6 CA7 DGA sing 98 n n CA6 HA61 DGA sing 99 n n CA6 HA62 DGA sing 100 n n CA7 CA8 DGA sing 101 n n CA7 HA71 DGA sing 102 n n CA7 HA72 DGA sing 103 n n CA8 CA9 DGA sing 104 n n CA8 HA81 DGA sing 105 n n CA8 HA82 DGA sing 106 n n CA9 CAA DGA sing 107 n n CA9 HA91 DGA sing 108 n n CA9 HA92 DGA sing 109 n n CAA CBA DGA sing 110 n n CAA HAT1 DGA sing 111 n n CAA HAT2 DGA sing 112 n n CBA CCA DGA sing 113 n n CBA HAE1 DGA sing 114 n n CBA HAE2 DGA sing 115 n n CCA CDA DGA sing 116 n n CCA HAW1 DGA sing 117 n n CCA HAW2 DGA sing 118 n n CDA CEA DGA sing 119 n n CDA HAH1 DGA sing 120 n n CDA HAH2 DGA sing 121 n n CEA CFA DGA sing 122 n n CEA HAF1 DGA sing 123 n n CEA HAF2 DGA sing 124 n n CFA CGA DGA sing 125 n n CFA HAN1 DGA sing 126 n n CFA HAN2 DGA sing 127 n n CGA CHA DGA sing 128 n n CGA HAS1 DGA sing 129 n n CGA HAS2 DGA sing 130 n n CHA CIA DGA sing 131 n n CHA HAV1 DGA sing 132 n n CHA HAV2 DGA sing 133 n n CIA HAG1 DGA sing 134 n n CIA HAG2 DGA sing 135 n n CIA HAG3 DGA sing 136 n n CB1 CB2 DGA sing 137 n n CB1 OB1 DGA doub 138 n n CB1 OG2 DGA sing 139 n n CB2 CB3 DGA sing 140 n n CB2 HB21 DGA sing 141 n n CB2 HB22 DGA sing 142 n n CB3 CB4 DGA sing 143 n n CB3 HB31 DGA sing 144 n n CB3 HB32 DGA sing 145 n n CB4 CB5 DGA sing 146 n n CB4 HB41 DGA sing 147 n n CB4 HB42 DGA sing 148 n n CB5 CB6 DGA sing 149 n n CB5 HB51 DGA sing 150 n n CB5 HB52 DGA sing 151 n n CB6 CB7 DGA sing 152 n n CB6 HB61 DGA sing 153 n n CB6 HB62 DGA sing 154 n n CB7 CB8 DGA sing 155 n n CB7 HB71 DGA sing 156 n n CB7 HB72 DGA sing 157 n n CB8 CB9 DGA sing 158 n n CB8 HB81 DGA sing 159 n n CB8 HB82 DGA sing 160 n n CB9 CAB DGA sing 161 n n CB9 HB91 DGA sing 162 n n CB9 HB92 DGA sing 163 n n CAB CBB DGA sing 164 n n CAB HBT1 DGA sing 165 n n CAB HBT2 DGA sing 166 n n CBB CCB DGA sing 167 n n CBB HBE1 DGA sing 168 n n CBB HBE2 DGA sing 169 n n CCB CDB DGA sing 170 n n CCB HBW1 DGA sing 171 n n CCB HBW2 DGA sing 172 n n CDB CEB DGA sing 173 n n CDB HBH1 DGA sing 174 n n CDB HBH2 DGA sing 175 n n CEB CFB DGA sing 176 n n CEB HBF1 DGA sing 177 n n CEB HBF2 DGA sing 178 n n CFB CGB DGA sing 179 n n CFB HBN1 DGA sing 180 n n CFB HBN2 DGA sing 181 n n CGB CHB DGA sing 182 n n CGB HBS1 DGA sing 183 n n CGB HBS2 DGA sing 184 n n CHB CIB DGA sing 185 n n CHB HBV1 DGA sing 186 n n CHB HBV2 DGA sing 187 n n CIB HBG1 DGA sing 188 n n CIB HBG2 DGA sing 189 n n CIB HBG3 DGA sing 190 n n OG1 CG1 DGA sing 191 n n CG1 CG2 DGA sing 192 n n CG1 HG11 DGA sing 193 n n CG1 HG12 DGA sing 194 n n CG2 OG2 DGA sing 195 n n CG2 CG3 DGA sing 196 n n CG2 HG2 DGA sing 197 n n CG3 OXT DGA sing 198 n n CG3 HG31 DGA sing 199 n n CG3 HG32 DGA sing 200 n n OXT HXT DGA sing 201 n n # _atom_sites.entry_id 3I5V _atom_sites.fract_transf_matrix[1][1] 0.018121 _atom_sites.fract_transf_matrix[1][2] 0.000674 _atom_sites.fract_transf_matrix[1][3] 0.001499 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014492 _atom_sites.fract_transf_matrix[2][3] 0.000821 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DGA D 1 401 401 DGA DGA . F 3 HOH A 1 294 294 HOH HOH . F 3 HOH A 2 295 295 HOH HOH . F 3 HOH A 3 296 296 HOH HOH . F 3 HOH A 4 297 297 HOH HOH . F 3 HOH A 5 298 298 HOH HOH . F 3 HOH A 6 299 299 HOH HOH . F 3 HOH A 7 300 300 HOH HOH . F 3 HOH A 8 301 301 HOH HOH . F 3 HOH A 9 302 302 HOH HOH . F 3 HOH A 10 303 303 HOH HOH . F 3 HOH A 11 304 304 HOH HOH . F 3 HOH A 12 305 305 HOH HOH . F 3 HOH A 13 306 306 HOH HOH . F 3 HOH A 14 307 307 HOH HOH . F 3 HOH A 15 308 308 HOH HOH . F 3 HOH A 16 309 309 HOH HOH . F 3 HOH A 17 310 310 HOH HOH . F 3 HOH A 18 311 311 HOH HOH . F 3 HOH A 19 312 312 HOH HOH . F 3 HOH A 20 313 313 HOH HOH . F 3 HOH A 21 314 314 HOH HOH . F 3 HOH A 22 315 315 HOH HOH . F 3 HOH A 23 316 316 HOH HOH . F 3 HOH A 24 317 317 HOH HOH . F 3 HOH A 25 318 318 HOH HOH . F 3 HOH A 26 319 319 HOH HOH . F 3 HOH A 27 320 320 HOH HOH . F 3 HOH A 28 321 321 HOH HOH . F 3 HOH A 29 322 322 HOH HOH . F 3 HOH A 30 323 323 HOH HOH . F 3 HOH A 31 324 324 HOH HOH . F 3 HOH A 32 325 325 HOH HOH . F 3 HOH A 33 326 326 HOH HOH . G 3 HOH B 1 294 294 HOH HOH . G 3 HOH B 2 295 295 HOH HOH . G 3 HOH B 3 296 296 HOH HOH . G 3 HOH B 4 297 297 HOH HOH . G 3 HOH B 5 298 298 HOH HOH . G 3 HOH B 6 299 299 HOH HOH . G 3 HOH B 7 300 300 HOH HOH . G 3 HOH B 8 301 301 HOH HOH . G 3 HOH B 9 302 302 HOH HOH . G 3 HOH B 10 303 303 HOH HOH . G 3 HOH B 11 304 304 HOH HOH . G 3 HOH B 12 305 305 HOH HOH . G 3 HOH B 13 306 306 HOH HOH . G 3 HOH B 14 307 307 HOH HOH . G 3 HOH B 15 308 308 HOH HOH . G 3 HOH B 16 309 309 HOH HOH . G 3 HOH B 17 310 310 HOH HOH . G 3 HOH B 18 311 311 HOH HOH . G 3 HOH B 19 312 312 HOH HOH . G 3 HOH B 20 313 313 HOH HOH . G 3 HOH B 21 314 314 HOH HOH . G 3 HOH B 22 315 315 HOH HOH . G 3 HOH B 23 316 316 HOH HOH . G 3 HOH B 24 317 317 HOH HOH . G 3 HOH B 25 318 318 HOH HOH . G 3 HOH B 26 319 319 HOH HOH . H 3 HOH C 1 294 294 HOH HOH . H 3 HOH C 2 295 295 HOH HOH . H 3 HOH C 3 296 296 HOH HOH . H 3 HOH C 4 297 297 HOH HOH . H 3 HOH C 5 298 298 HOH HOH . H 3 HOH C 6 299 299 HOH HOH . H 3 HOH C 7 300 300 HOH HOH . H 3 HOH C 8 301 301 HOH HOH . H 3 HOH C 9 302 302 HOH HOH . H 3 HOH C 10 303 303 HOH HOH . H 3 HOH C 11 304 304 HOH HOH . H 3 HOH C 12 305 305 HOH HOH . H 3 HOH C 13 306 306 HOH HOH . H 3 HOH C 14 307 307 HOH HOH . H 3 HOH C 15 308 308 HOH HOH . H 3 HOH C 16 309 309 HOH HOH . H 3 HOH C 17 311 311 HOH HOH . H 3 HOH C 18 312 312 HOH HOH . H 3 HOH C 19 313 313 HOH HOH . H 3 HOH C 20 314 314 HOH HOH . H 3 HOH C 21 315 315 HOH HOH . H 3 HOH C 22 316 316 HOH HOH . H 3 HOH C 23 317 317 HOH HOH . H 3 HOH C 24 318 318 HOH HOH . H 3 HOH C 25 319 319 HOH HOH . H 3 HOH C 26 320 320 HOH HOH . H 3 HOH C 27 321 321 HOH HOH . H 3 HOH C 28 322 322 HOH HOH . H 3 HOH C 29 323 323 HOH HOH . H 3 HOH C 30 324 324 HOH HOH . H 3 HOH C 31 325 325 HOH HOH . I 3 HOH D 1 294 294 HOH HOH . I 3 HOH D 2 295 295 HOH HOH . I 3 HOH D 3 296 296 HOH HOH . I 3 HOH D 4 297 297 HOH HOH . I 3 HOH D 5 298 298 HOH HOH . I 3 HOH D 6 299 299 HOH HOH . I 3 HOH D 7 300 300 HOH HOH . I 3 HOH D 8 301 301 HOH HOH . I 3 HOH D 9 302 302 HOH HOH . I 3 HOH D 10 303 303 HOH HOH . I 3 HOH D 11 304 304 HOH HOH . I 3 HOH D 12 305 305 HOH HOH . I 3 HOH D 13 306 306 HOH HOH . I 3 HOH D 14 307 307 HOH HOH . I 3 HOH D 15 308 308 HOH HOH . I 3 HOH D 16 309 309 HOH HOH . I 3 HOH D 17 310 310 HOH HOH . I 3 HOH D 18 311 311 HOH HOH . I 3 HOH D 19 312 312 HOH HOH . I 3 HOH D 20 313 313 HOH HOH . I 3 HOH D 21 314 314 HOH HOH . I 3 HOH D 22 315 315 HOH HOH . I 3 HOH D 23 316 316 HOH HOH . I 3 HOH D 24 317 317 HOH HOH . I 3 HOH D 25 318 318 HOH HOH . I 3 HOH D 26 319 319 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 DGA . . . E 2 1.878 -0.126 -15.956 1 20 ? CA1 DGA 401 D 1 HETATM 2 C CA2 DGA . . . E 2 1.136 1.013 -16.554 1 20 ? CA2 DGA 401 D 1 HETATM 3 C CA3 DGA . . . E 2 1.577 1.023 -17.998 1 20 ? CA3 DGA 401 D 1 HETATM 4 C CA4 DGA . . . E 2 1.52 2.415 -18.595 1 20 ? CA4 DGA 401 D 1 HETATM 5 C CA5 DGA . . . E 2 0.463 2.435 -19.677 1 20 ? CA5 DGA 401 D 1 HETATM 6 C CB1 DGA . . . E 2 5.192 1.2 -15.541 1 20 ? CB1 DGA 401 D 1 HETATM 7 C CB2 DGA . . . E 2 4.77 2.26 -14.581 1 20 ? CB2 DGA 401 D 1 HETATM 8 C CB3 DGA . . . E 2 4.502 3.502 -15.386 1 20 ? CB3 DGA 401 D 1 HETATM 9 C CB4 DGA . . . E 2 4.007 4.561 -14.423 1 20 ? CB4 DGA 401 D 1 HETATM 10 C CB5 DGA . . . E 2 4.382 4.198 -12.995 1 20 ? CB5 DGA 401 D 1 HETATM 11 O OB1 DGA . . . E 2 5.287 1.575 -16.683 1 20 ? OB1 DGA 401 D 1 HETATM 12 O OG1 DGA . . . E 2 2.65 -0.843 -16.924 1 20 ? OG1 DGA 401 D 1 HETATM 13 C CG1 DGA . . . E 2 4.039 -1.077 -16.77 1 20 ? CG1 DGA 401 D 1 HETATM 14 C CG2 DGA . . . E 2 4.48 -1.159 -15.327 1 20 ? CG2 DGA 401 D 1 HETATM 15 O OG2 DGA . . . E 2 5.503 -0.174 -15.145 1 20 ? OG2 DGA 401 D 1 HETATM 16 C CG3 DGA . . . E 2 4.995 -2.583 -15.045 1 20 ? CG3 DGA 401 D 1 HETATM 17 O OXT DGA . . . E 2 4.116 -3.483 -14.329 1 20 ? OXT DGA 401 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 17 #