data_3I5Y
#
_model_server_result.job_id            ilbWxX_OQ94m_pZTr7vK0g 
_model_server_result.datetime_utc      '2024-10-19 21:32:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i5y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    3I5Y 
#
_exptl.entry_id    3I5Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3I5Y 
_cell.length_a            89.19 
_cell.length_b            126.352 
_cell.length_c            55.99 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3I5Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' U 3 B U 3 1_555 B P 5BU 4 B 5BU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? 
covale ? covale2 B O3' 5BU 4 B 5BU 4 1_555 B P U 5 B U 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? 
metalc ? metalc1 D MG MG . A MG 900 1_555 C O3G ANP . A ANP 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? 
metalc ? metalc2 D MG MG . A MG 900 1_555 C O1B ANP . A ANP 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? 
metalc ? metalc3 D MG MG . A MG 900 1_555 E O HOH . A HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc4 D MG MG . A MG 900 1_555 E O HOH . A HOH 1045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc5 D MG MG . A MG 900 1_555 E O HOH . A HOH 1048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc6 D MG MG . A MG 900 1_555 E O HOH . A HOH 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 48 n n 
PG O2G ANP sing 49 n n 
PG O3G ANP sing 50 n n 
PG N3B ANP sing 51 n n 
O2G HOG2 ANP sing 52 n n 
O3G HOG3 ANP sing 53 n n 
PB O1B ANP doub 54 n n 
PB O2B ANP sing 55 n n 
PB N3B ANP sing 56 n n 
PB O3A ANP sing 57 n n 
O2B HOB2 ANP sing 58 n n 
N3B HNB1 ANP sing 59 n n 
PA O1A ANP doub 60 n n 
PA O2A ANP sing 61 n n 
PA O3A ANP sing 62 n n 
PA O5' ANP sing 63 n n 
O2A HOA2 ANP sing 64 n n 
O5' C5' ANP sing 65 n n 
C5' C4' ANP sing 66 n n 
C5' "H5'1" ANP sing 67 n n 
C5' "H5'2" ANP sing 68 n n 
C4' O4' ANP sing 69 n n 
C4' C3' ANP sing 70 n n 
C4' H4' ANP sing 71 n n 
O4' C1' ANP sing 72 n n 
C3' O3' ANP sing 73 n n 
C3' C2' ANP sing 74 n n 
C3' H3' ANP sing 75 n n 
O3' HO3' ANP sing 76 n n 
C2' O2' ANP sing 77 n n 
C2' C1' ANP sing 78 n n 
C2' H2' ANP sing 79 n n 
O2' HO2' ANP sing 80 n n 
C1' N9 ANP sing 81 n n 
C1' H1' ANP sing 82 n n 
N9 C8 ANP sing 83 n y 
N9 C4 ANP sing 84 n y 
C8 N7 ANP doub 85 n y 
C8 H8 ANP sing 86 n n 
N7 C5 ANP sing 87 n y 
C5 C6 ANP sing 88 n y 
C5 C4 ANP doub 89 n y 
C6 N6 ANP sing 90 n n 
C6 N1 ANP doub 91 n y 
N6 HN61 ANP sing 92 n n 
N6 HN62 ANP sing 93 n n 
N1 C2 ANP sing 94 n y 
C2 N3 ANP doub 95 n y 
C2 H2 ANP sing 96 n n 
N3 C4 ANP sing 97 n y 
#
_atom_sites.entry_id                     3I5Y 
_atom_sites.fract_transf_matrix[1][1]    0.011212 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007914 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01786 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ANP A 1 1000 1000 ANP ANP . 
D 4 MG A 1 900 900 MG MG . 
E 5 HOH A 1 1001 1001 HOH HOH . 
E 5 HOH A 2 1002 1002 HOH HOH . 
E 5 HOH A 3 1003 1003 HOH HOH . 
E 5 HOH A 4 1004 1004 HOH HOH . 
E 5 HOH A 5 1005 1005 HOH HOH . 
E 5 HOH A 6 1006 1006 HOH HOH . 
E 5 HOH A 7 1007 1007 HOH HOH . 
E 5 HOH A 8 1008 1008 HOH HOH . 
E 5 HOH A 9 1009 1009 HOH HOH . 
E 5 HOH A 10 1010 1010 HOH HOH . 
E 5 HOH A 11 1011 1011 HOH HOH . 
E 5 HOH A 12 1012 1012 HOH HOH . 
E 5 HOH A 13 1013 1013 HOH HOH . 
E 5 HOH A 14 1014 1014 HOH HOH . 
E 5 HOH A 15 1015 1015 HOH HOH . 
E 5 HOH A 16 1016 1016 HOH HOH . 
E 5 HOH A 17 1017 1017 HOH HOH . 
E 5 HOH A 18 1018 1018 HOH HOH . 
E 5 HOH A 19 1019 1019 HOH HOH . 
E 5 HOH A 20 1020 1020 HOH HOH . 
E 5 HOH A 21 1021 1021 HOH HOH . 
E 5 HOH A 22 1022 1022 HOH HOH . 
E 5 HOH A 23 1023 1023 HOH HOH . 
E 5 HOH A 24 1024 1024 HOH HOH . 
E 5 HOH A 25 1025 1025 HOH HOH . 
E 5 HOH A 26 1026 1026 HOH HOH . 
E 5 HOH A 27 1027 1027 HOH HOH . 
E 5 HOH A 28 1028 1028 HOH HOH . 
E 5 HOH A 29 1029 1029 HOH HOH . 
E 5 HOH A 30 1030 1030 HOH HOH . 
E 5 HOH A 31 1031 1031 HOH HOH . 
E 5 HOH A 32 1032 1032 HOH HOH . 
E 5 HOH A 33 1033 1033 HOH HOH . 
E 5 HOH A 34 1034 1034 HOH HOH . 
E 5 HOH A 35 1035 1035 HOH HOH . 
E 5 HOH A 36 1036 1036 HOH HOH . 
E 5 HOH A 37 1037 1037 HOH HOH . 
E 5 HOH A 38 1038 1038 HOH HOH . 
E 5 HOH A 39 1039 1039 HOH HOH . 
E 5 HOH A 40 1040 1040 HOH HOH . 
E 5 HOH A 41 1041 1041 HOH HOH . 
E 5 HOH A 42 1042 1042 HOH HOH . 
E 5 HOH A 43 1043 1043 HOH HOH . 
E 5 HOH A 44 1044 1044 HOH HOH . 
E 5 HOH A 45 1045 1045 HOH HOH . 
E 5 HOH A 46 1046 1046 HOH HOH . 
E 5 HOH A 47 1047 1047 HOH HOH . 
E 5 HOH A 48 1048 1048 HOH HOH . 
E 5 HOH A 49 1049 1049 HOH HOH . 
E 5 HOH A 50 1050 1050 HOH HOH . 
E 5 HOH A 51 1051 1051 HOH HOH . 
E 5 HOH A 52 1052 1052 HOH HOH . 
E 5 HOH A 53 1053 1053 HOH HOH . 
E 5 HOH A 54 1054 1054 HOH HOH . 
E 5 HOH A 55 1055 1055 HOH HOH . 
E 5 HOH A 56 1056 1056 HOH HOH . 
E 5 HOH A 57 1057 1057 HOH HOH . 
E 5 HOH A 58 1058 1058 HOH HOH . 
E 5 HOH A 59 1059 1059 HOH HOH . 
E 5 HOH A 60 1060 1060 HOH HOH . 
E 5 HOH A 61 1061 1061 HOH HOH . 
E 5 HOH A 62 1062 1062 HOH HOH . 
E 5 HOH A 63 1063 1063 HOH HOH . 
E 5 HOH A 64 1064 1064 HOH HOH . 
E 5 HOH A 65 1065 1065 HOH HOH . 
E 5 HOH A 66 1066 1066 HOH HOH . 
E 5 HOH A 67 1067 1067 HOH HOH . 
E 5 HOH A 68 1068 1068 HOH HOH . 
E 5 HOH A 69 1069 1069 HOH HOH . 
E 5 HOH A 70 1070 1070 HOH HOH . 
E 5 HOH A 71 1071 1071 HOH HOH . 
E 5 HOH A 72 1072 1072 HOH HOH . 
E 5 HOH A 73 1073 1073 HOH HOH . 
E 5 HOH A 74 1074 1074 HOH HOH . 
E 5 HOH A 75 1075 1075 HOH HOH . 
E 5 HOH A 76 1076 1076 HOH HOH . 
E 5 HOH A 77 1077 1077 HOH HOH . 
E 5 HOH A 78 1078 1078 HOH HOH . 
E 5 HOH A 79 1079 1079 HOH HOH . 
E 5 HOH A 80 1080 1080 HOH HOH . 
E 5 HOH A 81 1081 1081 HOH HOH . 
E 5 HOH A 82 1082 1082 HOH HOH . 
F 5 HOH B 1 1083 1083 HOH HOH . 
F 5 HOH B 2 1084 1084 HOH HOH . 
F 5 HOH B 3 1085 1085 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . C 3 71.374 27.944 16.572 1 17.91 ? PG ANP 1000 A 1 
HETATM 2 O O1G ANP . . . C 3 72.035 27.505 17.864 1 16.64 ? O1G ANP 1000 A 1 
HETATM 3 O O2G ANP . . . C 3 70.486 26.906 15.951 1 15.98 ? O2G ANP 1000 A 1 
HETATM 4 O O3G ANP . . . C 3 72.328 28.575 15.588 1 17.64 ? O3G ANP 1000 A 1 
HETATM 5 P PB ANP . . . C 3 70.697 30.885 17.122 1 16.43 ? PB ANP 1000 A 1 
HETATM 6 O O1B ANP . . . C 3 71.587 31.258 15.96 1 16.8 ? O1B ANP 1000 A 1 
HETATM 7 O O2B ANP . . . C 3 71.213 31.156 18.506 1 16.5 ? O2B ANP 1000 A 1 
HETATM 8 N N3B ANP . . . C 3 70.267 29.201 17.034 1 16.75 ? N3B ANP 1000 A 1 
HETATM 9 P PA ANP . . . C 3 68.972 32.408 15.506 1 19.74 ? PA ANP 1000 A 1 
HETATM 10 O O1A ANP . . . C 3 69.926 33.578 15.391 1 20.02 ? O1A ANP 1000 A 1 
HETATM 11 O O2A ANP . . . C 3 68.877 31.439 14.366 1 16.52 ? O2A ANP 1000 A 1 
HETATM 12 O O3A ANP . . . C 3 69.301 31.652 16.891 1 17.38 ? O3A ANP 1000 A 1 
HETATM 13 O O5' ANP . . . C 3 67.506 33.006 15.795 1 19.65 ? O5' ANP 1000 A 1 
HETATM 14 C C5' ANP . . . C 3 66.39 32.136 15.891 1 20.36 ? C5' ANP 1000 A 1 
HETATM 15 C C4' ANP . . . C 3 65.113 32.899 15.616 1 20.66 ? C4' ANP 1000 A 1 
HETATM 16 O O4' ANP . . . C 3 64.937 33.895 16.619 1 22.3 ? O4' ANP 1000 A 1 
HETATM 17 C C3' ANP . . . C 3 65.129 33.605 14.275 1 21.16 ? C3' ANP 1000 A 1 
HETATM 18 O O3' ANP . . . C 3 64.018 33.185 13.485 1 20.3 ? O3' ANP 1000 A 1 
HETATM 19 C C2' ANP . . . C 3 65.041 35.084 14.584 1 21.95 ? C2' ANP 1000 A 1 
HETATM 20 O O2' ANP . . . C 3 64.161 35.749 13.67 1 22.65 ? O2' ANP 1000 A 1 
HETATM 21 C C1' ANP . . . C 3 64.529 35.127 16.018 1 22.35 ? C1' ANP 1000 A 1 
HETATM 22 N N9 ANP . . . C 3 65.072 36.218 16.859 1 22.91 ? N9 ANP 1000 A 1 
HETATM 23 C C8 ANP . . . C 3 66.277 36.812 16.757 1 23.18 ? C8 ANP 1000 A 1 
HETATM 24 N N7 ANP . . . C 3 66.44 37.753 17.717 1 22.89 ? N7 ANP 1000 A 1 
HETATM 25 C C5 ANP . . . C 3 65.326 37.769 18.46 1 23.11 ? C5 ANP 1000 A 1 
HETATM 26 C C6 ANP . . . C 3 64.842 38.525 19.632 1 23.18 ? C6 ANP 1000 A 1 
HETATM 27 N N6 ANP . . . C 3 65.607 39.477 20.207 1 22.28 ? N6 ANP 1000 A 1 
HETATM 28 N N1 ANP . . . C 3 63.614 38.224 20.111 1 23.6 ? N1 ANP 1000 A 1 
HETATM 29 C C2 ANP . . . C 3 62.842 37.273 19.548 1 23.33 ? C2 ANP 1000 A 1 
HETATM 30 N N3 ANP . . . C 3 63.222 36.549 18.48 1 23.4 ? N3 ANP 1000 A 1 
HETATM 31 C C4 ANP . . . C 3 64.43 36.747 17.9 1 23.39 ? C4 ANP 1000 A 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#