data_3I64 # _model_server_result.job_id vbyF6xF4M8ngMSkNtsNCig _model_server_result.datetime_utc '2024-11-26 22:14:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3I64 # _exptl.entry_id 3I64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I64 _cell.length_a 108.031 _cell.length_b 108.031 _cell.length_c 211.854 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 314 n n N HN1 SAH sing 315 n n N HN2 SAH sing 316 n n CA CB SAH sing 317 n n CA C SAH sing 318 n n CA HA SAH sing 319 n n CB CG SAH sing 320 n n CB HB1 SAH sing 321 n n CB HB2 SAH sing 322 n n CG SD SAH sing 323 n n CG HG1 SAH sing 324 n n CG HG2 SAH sing 325 n n SD C5' SAH sing 326 n n C O SAH doub 327 n n C OXT SAH sing 328 n n OXT HXT SAH sing 329 n n C5' C4' SAH sing 330 n n C5' "H5'1" SAH sing 331 n n C5' "H5'2" SAH sing 332 n n C4' O4' SAH sing 333 n n C4' C3' SAH sing 334 n n C4' H4' SAH sing 335 n n O4' C1' SAH sing 336 n n C3' O3' SAH sing 337 n n C3' C2' SAH sing 338 n n C3' H3' SAH sing 339 n n O3' HO3' SAH sing 340 n n C2' O2' SAH sing 341 n n C2' C1' SAH sing 342 n n C2' H2' SAH sing 343 n n O2' HO2' SAH sing 344 n n C1' N9 SAH sing 345 n n C1' H1' SAH sing 346 n n N9 C8 SAH sing 347 n y N9 C4 SAH sing 348 n y C8 N7 SAH doub 349 n y C8 H8 SAH sing 350 n n N7 C5 SAH sing 351 n y C5 C6 SAH sing 352 n y C5 C4 SAH doub 353 n y C6 N6 SAH sing 354 n n C6 N1 SAH doub 355 n y N6 HN61 SAH sing 356 n n N6 HN62 SAH sing 357 n n N1 C2 SAH sing 358 n y C2 N3 SAH doub 359 n y C2 H2 SAH sing 360 n n N3 C4 SAH sing 361 n y # _atom_sites.entry_id 3I64 _atom_sites.fract_transf_matrix[1][1] 0.009257 _atom_sites.fract_transf_matrix[1][2] 0.005344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 1 SAH SAH . D 3 DNA A 1 402 3 DNA DHN . E 4 GOL A 1 403 5 GOL GOL . F 2 SAH B 1 401 2 SAH SAH . G 3 DNA B 1 402 4 DNA DHN . H 4 GOL B 1 404 6 GOL GOL . I 5 HOH A 1 501 1 HOH HOH . I 5 HOH A 2 503 3 HOH HOH . I 5 HOH A 3 505 5 HOH HOH . I 5 HOH A 4 507 7 HOH HOH . I 5 HOH A 5 508 8 HOH HOH . I 5 HOH A 6 510 10 HOH HOH . I 5 HOH A 7 511 11 HOH HOH . I 5 HOH A 8 512 12 HOH HOH . I 5 HOH A 9 516 16 HOH HOH . I 5 HOH A 10 520 20 HOH HOH . I 5 HOH A 11 524 24 HOH HOH . I 5 HOH A 12 528 28 HOH HOH . I 5 HOH A 13 529 29 HOH HOH . I 5 HOH A 14 531 31 HOH HOH . I 5 HOH A 15 538 38 HOH HOH . I 5 HOH A 16 541 41 HOH HOH . I 5 HOH A 17 542 42 HOH HOH . I 5 HOH A 18 543 43 HOH HOH . I 5 HOH A 19 544 44 HOH HOH . I 5 HOH A 20 546 46 HOH HOH . I 5 HOH A 21 548 48 HOH HOH . I 5 HOH A 22 549 49 HOH HOH . I 5 HOH A 23 550 50 HOH HOH . I 5 HOH A 24 551 51 HOH HOH . I 5 HOH A 25 552 52 HOH HOH . I 5 HOH A 26 557 57 HOH HOH . I 5 HOH A 27 558 58 HOH HOH . I 5 HOH A 28 559 59 HOH HOH . I 5 HOH A 29 561 61 HOH HOH . I 5 HOH A 30 562 62 HOH HOH . I 5 HOH A 31 563 63 HOH HOH . I 5 HOH A 32 568 68 HOH HOH . I 5 HOH A 33 569 69 HOH HOH . I 5 HOH A 34 572 72 HOH HOH . I 5 HOH A 35 574 74 HOH HOH . I 5 HOH A 36 576 76 HOH HOH . I 5 HOH A 37 580 80 HOH HOH . I 5 HOH A 38 583 83 HOH HOH . I 5 HOH A 39 585 85 HOH HOH . I 5 HOH A 40 586 86 HOH HOH . I 5 HOH A 41 587 87 HOH HOH . I 5 HOH A 42 588 88 HOH HOH . I 5 HOH A 43 590 90 HOH HOH . I 5 HOH A 44 592 92 HOH HOH . I 5 HOH A 45 594 94 HOH HOH . I 5 HOH A 46 595 95 HOH HOH . J 5 HOH B 1 502 2 HOH HOH . J 5 HOH B 2 504 4 HOH HOH . J 5 HOH B 3 506 6 HOH HOH . J 5 HOH B 4 509 9 HOH HOH . J 5 HOH B 5 513 13 HOH HOH . J 5 HOH B 6 514 14 HOH HOH . J 5 HOH B 7 515 15 HOH HOH . J 5 HOH B 8 517 17 HOH HOH . J 5 HOH B 9 518 18 HOH HOH . J 5 HOH B 10 519 19 HOH HOH . J 5 HOH B 11 521 21 HOH HOH . J 5 HOH B 12 522 22 HOH HOH . J 5 HOH B 13 523 23 HOH HOH . J 5 HOH B 14 525 25 HOH HOH . J 5 HOH B 15 526 26 HOH HOH . J 5 HOH B 16 527 27 HOH HOH . J 5 HOH B 17 530 30 HOH HOH . J 5 HOH B 18 532 32 HOH HOH . J 5 HOH B 19 533 33 HOH HOH . J 5 HOH B 20 534 34 HOH HOH . J 5 HOH B 21 535 35 HOH HOH . J 5 HOH B 22 536 36 HOH HOH . J 5 HOH B 23 537 37 HOH HOH . J 5 HOH B 24 539 39 HOH HOH . J 5 HOH B 25 540 40 HOH HOH . J 5 HOH B 26 545 45 HOH HOH . J 5 HOH B 27 547 47 HOH HOH . J 5 HOH B 28 553 53 HOH HOH . J 5 HOH B 29 554 54 HOH HOH . J 5 HOH B 30 555 55 HOH HOH . J 5 HOH B 31 556 56 HOH HOH . J 5 HOH B 32 560 60 HOH HOH . J 5 HOH B 33 564 64 HOH HOH . J 5 HOH B 34 565 65 HOH HOH . J 5 HOH B 35 566 66 HOH HOH . J 5 HOH B 36 567 67 HOH HOH . J 5 HOH B 37 570 70 HOH HOH . J 5 HOH B 38 571 71 HOH HOH . J 5 HOH B 39 573 73 HOH HOH . J 5 HOH B 40 575 75 HOH HOH . J 5 HOH B 41 577 77 HOH HOH . J 5 HOH B 42 578 78 HOH HOH . J 5 HOH B 43 579 79 HOH HOH . J 5 HOH B 44 581 81 HOH HOH . J 5 HOH B 45 582 82 HOH HOH . J 5 HOH B 46 584 84 HOH HOH . J 5 HOH B 47 589 89 HOH HOH . J 5 HOH B 48 591 91 HOH HOH . J 5 HOH B 49 593 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 -36.94 36.058 1.102 1 76.67 ? N SAH 401 A 1 HETATM 2 C CA SAH . . . C 2 -36.613 36.054 -0.332 1 73.81 ? CA SAH 401 A 1 HETATM 3 C CB SAH . . . C 2 -36.678 34.619 -0.861 1 71.31 ? CB SAH 401 A 1 HETATM 4 C CG SAH . . . C 2 -36.138 34.573 -2.29 1 66.68 ? CG SAH 401 A 1 HETATM 5 S SD SAH . . . C 2 -36.302 32.951 -3.123 1 63.17 ? SD SAH 401 A 1 HETATM 6 C C SAH . . . C 2 -37.608 36.923 -1.105 1 74.42 ? C SAH 401 A 1 HETATM 7 O O SAH . . . C 2 -37.024 36.4 0.767 1 78.53 ? O SAH 401 A 1 HETATM 8 O OXT SAH . . . C 2 -38.78 36.972 -0.675 1 73.53 ? OXT SAH 401 A 1 HETATM 9 C C5' SAH . . . C 2 -35.561 31.785 -1.924 1 62.06 ? C5' SAH 401 A 1 HETATM 10 C C4' SAH . . . C 2 -34.192 32.209 -1.39 1 59.66 ? C4' SAH 401 A 1 HETATM 11 O O4' SAH . . . C 2 -33.647 31.094 -0.663 1 59.97 ? O4' SAH 401 A 1 HETATM 12 C C3' SAH . . . C 2 -33.19 32.536 -2.502 1 59.6 ? C3' SAH 401 A 1 HETATM 13 O O3' SAH . . . C 2 -32.489 33.739 -2.176 1 59.94 ? O3' SAH 401 A 1 HETATM 14 C C2' SAH . . . C 2 -32.238 31.34 -2.46 1 59.43 ? C2' SAH 401 A 1 HETATM 15 O O2' SAH . . . C 2 -30.927 31.751 -2.861 1 57.28 ? O2' SAH 401 A 1 HETATM 16 C C1' SAH . . . C 2 -32.242 31.094 -0.953 1 58.92 ? C1' SAH 401 A 1 HETATM 17 N N9 SAH . . . C 2 -31.664 29.779 -0.602 1 59.71 ? N9 SAH 401 A 1 HETATM 18 C C8 SAH . . . C 2 -31.835 28.644 -1.277 1 59.68 ? C8 SAH 401 A 1 HETATM 19 N N7 SAH . . . C 2 -31.259 27.645 -0.612 1 60.54 ? N7 SAH 401 A 1 HETATM 20 C C5 SAH . . . C 2 -30.714 28.146 0.491 1 60.28 ? C5 SAH 401 A 1 HETATM 21 C C6 SAH . . . C 2 -30.022 27.602 1.566 1 58.95 ? C6 SAH 401 A 1 HETATM 22 N N6 SAH . . . C 2 -29.806 26.292 1.638 1 58.11 ? N6 SAH 401 A 1 HETATM 23 N N1 SAH . . . C 2 -29.613 28.41 2.551 1 60.19 ? N1 SAH 401 A 1 HETATM 24 C C2 SAH . . . C 2 -29.862 29.708 2.515 1 61.32 ? C2 SAH 401 A 1 HETATM 25 N N3 SAH . . . C 2 -30.522 30.26 1.513 1 60.4 ? N3 SAH 401 A 1 HETATM 26 C C4 SAH . . . C 2 -30.962 29.511 0.494 1 59.88 ? C4 SAH 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #