data_3I64 # _model_server_result.job_id bJ_C_o3D3H-tflcs8NsKmw _model_server_result.datetime_utc '2024-11-14 16:43:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":404}' # _entry.id 3I64 # _exptl.entry_id 3I64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I64 _cell.length_a 108.031 _cell.length_b 108.031 _cell.length_c 211.854 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 3I64 _atom_sites.fract_transf_matrix[1][1] 0.009257 _atom_sites.fract_transf_matrix[1][2] 0.005344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 1 SAH SAH . D 3 DNA A 1 402 3 DNA DHN . E 4 GOL A 1 403 5 GOL GOL . F 2 SAH B 1 401 2 SAH SAH . G 3 DNA B 1 402 4 DNA DHN . H 4 GOL B 1 404 6 GOL GOL . I 5 HOH A 1 501 1 HOH HOH . I 5 HOH A 2 503 3 HOH HOH . I 5 HOH A 3 505 5 HOH HOH . I 5 HOH A 4 507 7 HOH HOH . I 5 HOH A 5 508 8 HOH HOH . I 5 HOH A 6 510 10 HOH HOH . I 5 HOH A 7 511 11 HOH HOH . I 5 HOH A 8 512 12 HOH HOH . I 5 HOH A 9 516 16 HOH HOH . I 5 HOH A 10 520 20 HOH HOH . I 5 HOH A 11 524 24 HOH HOH . I 5 HOH A 12 528 28 HOH HOH . I 5 HOH A 13 529 29 HOH HOH . I 5 HOH A 14 531 31 HOH HOH . I 5 HOH A 15 538 38 HOH HOH . I 5 HOH A 16 541 41 HOH HOH . I 5 HOH A 17 542 42 HOH HOH . I 5 HOH A 18 543 43 HOH HOH . I 5 HOH A 19 544 44 HOH HOH . I 5 HOH A 20 546 46 HOH HOH . I 5 HOH A 21 548 48 HOH HOH . I 5 HOH A 22 549 49 HOH HOH . I 5 HOH A 23 550 50 HOH HOH . I 5 HOH A 24 551 51 HOH HOH . I 5 HOH A 25 552 52 HOH HOH . I 5 HOH A 26 557 57 HOH HOH . I 5 HOH A 27 558 58 HOH HOH . I 5 HOH A 28 559 59 HOH HOH . I 5 HOH A 29 561 61 HOH HOH . I 5 HOH A 30 562 62 HOH HOH . I 5 HOH A 31 563 63 HOH HOH . I 5 HOH A 32 568 68 HOH HOH . I 5 HOH A 33 569 69 HOH HOH . I 5 HOH A 34 572 72 HOH HOH . I 5 HOH A 35 574 74 HOH HOH . I 5 HOH A 36 576 76 HOH HOH . I 5 HOH A 37 580 80 HOH HOH . I 5 HOH A 38 583 83 HOH HOH . I 5 HOH A 39 585 85 HOH HOH . I 5 HOH A 40 586 86 HOH HOH . I 5 HOH A 41 587 87 HOH HOH . I 5 HOH A 42 588 88 HOH HOH . I 5 HOH A 43 590 90 HOH HOH . I 5 HOH A 44 592 92 HOH HOH . I 5 HOH A 45 594 94 HOH HOH . I 5 HOH A 46 595 95 HOH HOH . J 5 HOH B 1 502 2 HOH HOH . J 5 HOH B 2 504 4 HOH HOH . J 5 HOH B 3 506 6 HOH HOH . J 5 HOH B 4 509 9 HOH HOH . J 5 HOH B 5 513 13 HOH HOH . J 5 HOH B 6 514 14 HOH HOH . J 5 HOH B 7 515 15 HOH HOH . J 5 HOH B 8 517 17 HOH HOH . J 5 HOH B 9 518 18 HOH HOH . J 5 HOH B 10 519 19 HOH HOH . J 5 HOH B 11 521 21 HOH HOH . J 5 HOH B 12 522 22 HOH HOH . J 5 HOH B 13 523 23 HOH HOH . J 5 HOH B 14 525 25 HOH HOH . J 5 HOH B 15 526 26 HOH HOH . J 5 HOH B 16 527 27 HOH HOH . J 5 HOH B 17 530 30 HOH HOH . J 5 HOH B 18 532 32 HOH HOH . J 5 HOH B 19 533 33 HOH HOH . J 5 HOH B 20 534 34 HOH HOH . J 5 HOH B 21 535 35 HOH HOH . J 5 HOH B 22 536 36 HOH HOH . J 5 HOH B 23 537 37 HOH HOH . J 5 HOH B 24 539 39 HOH HOH . J 5 HOH B 25 540 40 HOH HOH . J 5 HOH B 26 545 45 HOH HOH . J 5 HOH B 27 547 47 HOH HOH . J 5 HOH B 28 553 53 HOH HOH . J 5 HOH B 29 554 54 HOH HOH . J 5 HOH B 30 555 55 HOH HOH . J 5 HOH B 31 556 56 HOH HOH . J 5 HOH B 32 560 60 HOH HOH . J 5 HOH B 33 564 64 HOH HOH . J 5 HOH B 34 565 65 HOH HOH . J 5 HOH B 35 566 66 HOH HOH . J 5 HOH B 36 567 67 HOH HOH . J 5 HOH B 37 570 70 HOH HOH . J 5 HOH B 38 571 71 HOH HOH . J 5 HOH B 39 573 73 HOH HOH . J 5 HOH B 40 575 75 HOH HOH . J 5 HOH B 41 577 77 HOH HOH . J 5 HOH B 42 578 78 HOH HOH . J 5 HOH B 43 579 79 HOH HOH . J 5 HOH B 44 581 81 HOH HOH . J 5 HOH B 45 582 82 HOH HOH . J 5 HOH B 46 584 84 HOH HOH . J 5 HOH B 47 589 89 HOH HOH . J 5 HOH B 48 591 91 HOH HOH . J 5 HOH B 49 593 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -43.469 34.896 -60.414 1 86.15 ? C1 GOL 404 B 1 HETATM 2 O O1 GOL . . . H 4 -43.5 33.841 -61.375 1 85.78 ? O1 GOL 404 B 1 HETATM 3 C C2 GOL . . . H 4 -44.903 35.338 -60.1 1 86.99 ? C2 GOL 404 B 1 HETATM 4 O O2 GOL . . . H 4 -45.641 34.201 -59.587 1 84.87 ? O2 GOL 404 B 1 HETATM 5 C C3 GOL . . . H 4 -44.875 36.493 -59.063 1 87.25 ? C3 GOL 404 B 1 HETATM 6 O O3 GOL . . . H 4 -46.207 36.956 -58.752 1 84.34 ? O3 GOL 404 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #