data_3I65 # _model_server_result.job_id U35_-mUUPR1lHvl7cxu8WA _model_server_result.datetime_utc '2024-11-04 22:36:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 3I65 # _exptl.entry_id 3I65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I65 _cell.length_a 85.858 _cell.length_b 85.858 _cell.length_c 138.352 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3I65 _atom_sites.fract_transf_matrix[1][1] 0.011647 _atom_sites.fract_transf_matrix[1][2] 0.006724 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JZ8 A 1 1001 1001 JZ8 JZ8 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 LDA A 1 1004 1004 LDA LDA . F 6 HOH A 1 1 1 HOH HOH . F 6 HOH A 2 2 2 HOH HOH . F 6 HOH A 3 3 3 HOH HOH . F 6 HOH A 4 4 4 HOH HOH . F 6 HOH A 5 5 5 HOH HOH . F 6 HOH A 6 6 6 HOH HOH . F 6 HOH A 7 7 7 HOH HOH . F 6 HOH A 8 8 8 HOH HOH . F 6 HOH A 9 9 9 HOH HOH . F 6 HOH A 10 10 10 HOH HOH . F 6 HOH A 11 11 11 HOH HOH . F 6 HOH A 12 12 12 HOH HOH . F 6 HOH A 13 13 13 HOH HOH . F 6 HOH A 14 14 14 HOH HOH . F 6 HOH A 15 15 15 HOH HOH . F 6 HOH A 16 16 16 HOH HOH . F 6 HOH A 17 17 17 HOH HOH . F 6 HOH A 18 18 18 HOH HOH . F 6 HOH A 19 19 19 HOH HOH . F 6 HOH A 20 20 20 HOH HOH . F 6 HOH A 21 21 21 HOH HOH . F 6 HOH A 22 22 22 HOH HOH . F 6 HOH A 23 23 23 HOH HOH . F 6 HOH A 24 24 24 HOH HOH . F 6 HOH A 25 25 25 HOH HOH . F 6 HOH A 26 26 26 HOH HOH . F 6 HOH A 27 27 27 HOH HOH . F 6 HOH A 28 28 28 HOH HOH . F 6 HOH A 29 29 29 HOH HOH . F 6 HOH A 30 30 30 HOH HOH . F 6 HOH A 31 31 31 HOH HOH . F 6 HOH A 32 32 32 HOH HOH . F 6 HOH A 33 33 33 HOH HOH . F 6 HOH A 34 34 34 HOH HOH . F 6 HOH A 35 35 35 HOH HOH . F 6 HOH A 36 36 36 HOH HOH . F 6 HOH A 37 37 37 HOH HOH . F 6 HOH A 38 38 38 HOH HOH . F 6 HOH A 39 39 39 HOH HOH . F 6 HOH A 40 40 40 HOH HOH . F 6 HOH A 41 41 41 HOH HOH . F 6 HOH A 42 42 42 HOH HOH . F 6 HOH A 43 43 43 HOH HOH . F 6 HOH A 44 44 44 HOH HOH . F 6 HOH A 45 45 45 HOH HOH . F 6 HOH A 46 46 46 HOH HOH . F 6 HOH A 47 47 47 HOH HOH . F 6 HOH A 48 48 48 HOH HOH . F 6 HOH A 49 49 49 HOH HOH . F 6 HOH A 50 50 50 HOH HOH . F 6 HOH A 51 51 51 HOH HOH . F 6 HOH A 52 52 52 HOH HOH . F 6 HOH A 53 53 53 HOH HOH . F 6 HOH A 54 54 54 HOH HOH . F 6 HOH A 55 55 55 HOH HOH . F 6 HOH A 56 56 56 HOH HOH . F 6 HOH A 57 57 57 HOH HOH . F 6 HOH A 58 58 58 HOH HOH . F 6 HOH A 59 59 59 HOH HOH . F 6 HOH A 60 60 60 HOH HOH . F 6 HOH A 61 61 61 HOH HOH . F 6 HOH A 62 62 62 HOH HOH . F 6 HOH A 63 63 63 HOH HOH . F 6 HOH A 64 64 64 HOH HOH . F 6 HOH A 65 65 65 HOH HOH . F 6 HOH A 66 66 66 HOH HOH . F 6 HOH A 67 67 67 HOH HOH . F 6 HOH A 68 68 68 HOH HOH . F 6 HOH A 69 69 69 HOH HOH . F 6 HOH A 70 70 70 HOH HOH . F 6 HOH A 71 71 71 HOH HOH . F 6 HOH A 72 72 72 HOH HOH . F 6 HOH A 73 73 73 HOH HOH . F 6 HOH A 74 74 74 HOH HOH . F 6 HOH A 75 75 75 HOH HOH . F 6 HOH A 76 76 76 HOH HOH . F 6 HOH A 77 77 77 HOH HOH . F 6 HOH A 78 78 78 HOH HOH . F 6 HOH A 79 79 79 HOH HOH . F 6 HOH A 80 80 80 HOH HOH . F 6 HOH A 81 81 81 HOH HOH . F 6 HOH A 82 82 82 HOH HOH . F 6 HOH A 83 83 83 HOH HOH . F 6 HOH A 84 84 84 HOH HOH . F 6 HOH A 85 85 85 HOH HOH . F 6 HOH A 86 86 86 HOH HOH . F 6 HOH A 87 87 87 HOH HOH . F 6 HOH A 88 88 88 HOH HOH . F 6 HOH A 89 89 89 HOH HOH . F 6 HOH A 90 90 90 HOH HOH . F 6 HOH A 91 91 91 HOH HOH . F 6 HOH A 92 92 92 HOH HOH . F 6 HOH A 93 93 93 HOH HOH . F 6 HOH A 94 94 94 HOH HOH . F 6 HOH A 95 95 95 HOH HOH . F 6 HOH A 96 96 96 HOH HOH . F 6 HOH A 97 97 97 HOH HOH . F 6 HOH A 98 98 98 HOH HOH . F 6 HOH A 99 99 99 HOH HOH . F 6 HOH A 100 100 100 HOH HOH . F 6 HOH A 101 101 101 HOH HOH . F 6 HOH A 102 102 102 HOH HOH . F 6 HOH A 103 103 103 HOH HOH . F 6 HOH A 104 104 104 HOH HOH . F 6 HOH A 105 105 105 HOH HOH . F 6 HOH A 106 106 106 HOH HOH . F 6 HOH A 107 107 107 HOH HOH . F 6 HOH A 108 108 108 HOH HOH . F 6 HOH A 109 109 109 HOH HOH . F 6 HOH A 110 110 110 HOH HOH . F 6 HOH A 111 111 111 HOH HOH . F 6 HOH A 112 112 112 HOH HOH . F 6 HOH A 113 113 113 HOH HOH . F 6 HOH A 114 114 114 HOH HOH . F 6 HOH A 115 115 115 HOH HOH . F 6 HOH A 116 116 116 HOH HOH . F 6 HOH A 117 117 117 HOH HOH . F 6 HOH A 118 118 118 HOH HOH . F 6 HOH A 119 119 119 HOH HOH . F 6 HOH A 120 120 120 HOH HOH . F 6 HOH A 121 121 121 HOH HOH . F 6 HOH A 122 122 122 HOH HOH . F 6 HOH A 123 123 123 HOH HOH . F 6 HOH A 124 124 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 3.047 21.419 3.51 1 33.14 ? N1 FMN 1002 A 1 HETATM 2 C C2 FMN . . . C 3 2.54 20.386 2.724 1 33.71 ? C2 FMN 1002 A 1 HETATM 3 O O2 FMN . . . C 3 2.729 20.399 1.503 1 33.44 ? O2 FMN 1002 A 1 HETATM 4 N N3 FMN . . . C 3 1.808 19.367 3.3 1 33.34 ? N3 FMN 1002 A 1 HETATM 5 C C4 FMN . . . C 3 1.58 19.331 4.664 1 32.97 ? C4 FMN 1002 A 1 HETATM 6 O O4 FMN . . . C 3 0.659 18.609 5.114 1 29.78 ? O4 FMN 1002 A 1 HETATM 7 C C4A FMN . . . C 3 2.119 20.363 5.451 1 33.08 ? C4A FMN 1002 A 1 HETATM 8 N N5 FMN . . . C 3 1.929 20.368 6.828 1 34.74 ? N5 FMN 1002 A 1 HETATM 9 C C5A FMN . . . C 3 2.404 21.397 7.619 1 33.02 ? C5A FMN 1002 A 1 HETATM 10 C C6 FMN . . . C 3 2.191 21.373 8.986 1 33.32 ? C6 FMN 1002 A 1 HETATM 11 C C7 FMN . . . C 3 2.679 22.409 9.804 1 33.48 ? C7 FMN 1002 A 1 HETATM 12 C C7M FMN . . . C 3 2.378 22.38 11.263 1 31.37 ? C7M FMN 1002 A 1 HETATM 13 C C8 FMN . . . C 3 3.393 23.467 9.239 1 33.47 ? C8 FMN 1002 A 1 HETATM 14 C C8M FMN . . . C 3 3.66 24.743 9.997 1 32.07 ? C8M FMN 1002 A 1 HETATM 15 C C9 FMN . . . C 3 3.61 23.453 7.869 1 32.95 ? C9 FMN 1002 A 1 HETATM 16 C C9A FMN . . . C 3 3.12 22.437 7.043 1 33.82 ? C9A FMN 1002 A 1 HETATM 17 N N10 FMN . . . C 3 3.347 22.437 5.666 1 32.89 ? N10 FMN 1002 A 1 HETATM 18 C C10 FMN . . . C 3 2.836 21.41 4.871 1 33.02 ? C10 FMN 1002 A 1 HETATM 19 C C1' FMN . . . C 3 4.227 23.46 5.022 1 31.9 ? C1' FMN 1002 A 1 HETATM 20 C C2' FMN . . . C 3 3.349 24.669 4.672 1 33.35 ? C2' FMN 1002 A 1 HETATM 21 O O2' FMN . . . C 3 2.375 24.301 3.695 1 34.31 ? O2' FMN 1002 A 1 HETATM 22 C C3' FMN . . . C 3 4.159 25.853 4.159 1 32.31 ? C3' FMN 1002 A 1 HETATM 23 O O3' FMN . . . C 3 4.712 25.51 2.909 1 33.07 ? O3' FMN 1002 A 1 HETATM 24 C C4' FMN . . . C 3 5.28 26.314 5.104 1 32.93 ? C4' FMN 1002 A 1 HETATM 25 O O4' FMN . . . C 3 4.748 26.482 6.41 1 33.1 ? O4' FMN 1002 A 1 HETATM 26 C C5' FMN . . . C 3 5.861 27.635 4.616 1 33.5 ? C5' FMN 1002 A 1 HETATM 27 O O5' FMN . . . C 3 4.885 28.661 4.721 1 35.66 ? O5' FMN 1002 A 1 HETATM 28 P P FMN . . . C 3 4.853 29.746 5.936 1 36.6 ? P FMN 1002 A 1 HETATM 29 O O1P FMN . . . C 3 4.47 28.981 7.173 1 37.67 ? O1P FMN 1002 A 1 HETATM 30 O O2P FMN . . . C 3 3.837 30.826 5.654 1 36.78 ? O2P FMN 1002 A 1 HETATM 31 O O3P FMN . . . C 3 6.224 30.313 6.101 1 36.41 ? O3P FMN 1002 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #