data_3I65 # _model_server_result.job_id 13ldExB-TAz09o6yrRCbPA _model_server_result.datetime_utc '2024-11-25 16:46:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 3I65 # _exptl.entry_id 3I65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I65 _cell.length_a 85.858 _cell.length_b 85.858 _cell.length_c 138.352 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 376 n y N1 C6 ORO sing 377 n y N1 HN1 ORO sing 378 n n C2 O2 ORO doub 379 n n C2 N3 ORO sing 380 n y N3 C4 ORO sing 381 n y N3 HN3 ORO sing 382 n n C4 O4 ORO doub 383 n n C4 C5 ORO sing 384 n y C5 C6 ORO doub 385 n y C5 H5 ORO sing 386 n n C6 C7 ORO sing 387 n n C7 O71 ORO doub 388 n n C7 O72 ORO sing 389 n n O72 HO7 ORO sing 390 n n # _atom_sites.entry_id 3I65 _atom_sites.fract_transf_matrix[1][1] 0.011647 _atom_sites.fract_transf_matrix[1][2] 0.006724 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JZ8 A 1 1001 1001 JZ8 JZ8 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 LDA A 1 1004 1004 LDA LDA . F 6 HOH A 1 1 1 HOH HOH . F 6 HOH A 2 2 2 HOH HOH . F 6 HOH A 3 3 3 HOH HOH . F 6 HOH A 4 4 4 HOH HOH . F 6 HOH A 5 5 5 HOH HOH . F 6 HOH A 6 6 6 HOH HOH . F 6 HOH A 7 7 7 HOH HOH . F 6 HOH A 8 8 8 HOH HOH . F 6 HOH A 9 9 9 HOH HOH . F 6 HOH A 10 10 10 HOH HOH . F 6 HOH A 11 11 11 HOH HOH . F 6 HOH A 12 12 12 HOH HOH . F 6 HOH A 13 13 13 HOH HOH . F 6 HOH A 14 14 14 HOH HOH . F 6 HOH A 15 15 15 HOH HOH . F 6 HOH A 16 16 16 HOH HOH . F 6 HOH A 17 17 17 HOH HOH . F 6 HOH A 18 18 18 HOH HOH . F 6 HOH A 19 19 19 HOH HOH . F 6 HOH A 20 20 20 HOH HOH . F 6 HOH A 21 21 21 HOH HOH . F 6 HOH A 22 22 22 HOH HOH . F 6 HOH A 23 23 23 HOH HOH . F 6 HOH A 24 24 24 HOH HOH . F 6 HOH A 25 25 25 HOH HOH . F 6 HOH A 26 26 26 HOH HOH . F 6 HOH A 27 27 27 HOH HOH . F 6 HOH A 28 28 28 HOH HOH . F 6 HOH A 29 29 29 HOH HOH . F 6 HOH A 30 30 30 HOH HOH . F 6 HOH A 31 31 31 HOH HOH . F 6 HOH A 32 32 32 HOH HOH . F 6 HOH A 33 33 33 HOH HOH . F 6 HOH A 34 34 34 HOH HOH . F 6 HOH A 35 35 35 HOH HOH . F 6 HOH A 36 36 36 HOH HOH . F 6 HOH A 37 37 37 HOH HOH . F 6 HOH A 38 38 38 HOH HOH . F 6 HOH A 39 39 39 HOH HOH . F 6 HOH A 40 40 40 HOH HOH . F 6 HOH A 41 41 41 HOH HOH . F 6 HOH A 42 42 42 HOH HOH . F 6 HOH A 43 43 43 HOH HOH . F 6 HOH A 44 44 44 HOH HOH . F 6 HOH A 45 45 45 HOH HOH . F 6 HOH A 46 46 46 HOH HOH . F 6 HOH A 47 47 47 HOH HOH . F 6 HOH A 48 48 48 HOH HOH . F 6 HOH A 49 49 49 HOH HOH . F 6 HOH A 50 50 50 HOH HOH . F 6 HOH A 51 51 51 HOH HOH . F 6 HOH A 52 52 52 HOH HOH . F 6 HOH A 53 53 53 HOH HOH . F 6 HOH A 54 54 54 HOH HOH . F 6 HOH A 55 55 55 HOH HOH . F 6 HOH A 56 56 56 HOH HOH . F 6 HOH A 57 57 57 HOH HOH . F 6 HOH A 58 58 58 HOH HOH . F 6 HOH A 59 59 59 HOH HOH . F 6 HOH A 60 60 60 HOH HOH . F 6 HOH A 61 61 61 HOH HOH . F 6 HOH A 62 62 62 HOH HOH . F 6 HOH A 63 63 63 HOH HOH . F 6 HOH A 64 64 64 HOH HOH . F 6 HOH A 65 65 65 HOH HOH . F 6 HOH A 66 66 66 HOH HOH . F 6 HOH A 67 67 67 HOH HOH . F 6 HOH A 68 68 68 HOH HOH . F 6 HOH A 69 69 69 HOH HOH . F 6 HOH A 70 70 70 HOH HOH . F 6 HOH A 71 71 71 HOH HOH . F 6 HOH A 72 72 72 HOH HOH . F 6 HOH A 73 73 73 HOH HOH . F 6 HOH A 74 74 74 HOH HOH . F 6 HOH A 75 75 75 HOH HOH . F 6 HOH A 76 76 76 HOH HOH . F 6 HOH A 77 77 77 HOH HOH . F 6 HOH A 78 78 78 HOH HOH . F 6 HOH A 79 79 79 HOH HOH . F 6 HOH A 80 80 80 HOH HOH . F 6 HOH A 81 81 81 HOH HOH . F 6 HOH A 82 82 82 HOH HOH . F 6 HOH A 83 83 83 HOH HOH . F 6 HOH A 84 84 84 HOH HOH . F 6 HOH A 85 85 85 HOH HOH . F 6 HOH A 86 86 86 HOH HOH . F 6 HOH A 87 87 87 HOH HOH . F 6 HOH A 88 88 88 HOH HOH . F 6 HOH A 89 89 89 HOH HOH . F 6 HOH A 90 90 90 HOH HOH . F 6 HOH A 91 91 91 HOH HOH . F 6 HOH A 92 92 92 HOH HOH . F 6 HOH A 93 93 93 HOH HOH . F 6 HOH A 94 94 94 HOH HOH . F 6 HOH A 95 95 95 HOH HOH . F 6 HOH A 96 96 96 HOH HOH . F 6 HOH A 97 97 97 HOH HOH . F 6 HOH A 98 98 98 HOH HOH . F 6 HOH A 99 99 99 HOH HOH . F 6 HOH A 100 100 100 HOH HOH . F 6 HOH A 101 101 101 HOH HOH . F 6 HOH A 102 102 102 HOH HOH . F 6 HOH A 103 103 103 HOH HOH . F 6 HOH A 104 104 104 HOH HOH . F 6 HOH A 105 105 105 HOH HOH . F 6 HOH A 106 106 106 HOH HOH . F 6 HOH A 107 107 107 HOH HOH . F 6 HOH A 108 108 108 HOH HOH . F 6 HOH A 109 109 109 HOH HOH . F 6 HOH A 110 110 110 HOH HOH . F 6 HOH A 111 111 111 HOH HOH . F 6 HOH A 112 112 112 HOH HOH . F 6 HOH A 113 113 113 HOH HOH . F 6 HOH A 114 114 114 HOH HOH . F 6 HOH A 115 115 115 HOH HOH . F 6 HOH A 116 116 116 HOH HOH . F 6 HOH A 117 117 117 HOH HOH . F 6 HOH A 118 118 118 HOH HOH . F 6 HOH A 119 119 119 HOH HOH . F 6 HOH A 120 120 120 HOH HOH . F 6 HOH A 121 121 121 HOH HOH . F 6 HOH A 122 122 122 HOH HOH . F 6 HOH A 123 123 123 HOH HOH . F 6 HOH A 124 124 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . D 4 5.493 19.085 7.578 1 37.96 ? N1 ORO 1003 A 1 HETATM 2 C C2 ORO . . . D 4 6.011 19.993 6.741 1 39.03 ? C2 ORO 1003 A 1 HETATM 3 O O2 ORO . . . D 4 6.68 20.94 7.204 1 38.83 ? O2 ORO 1003 A 1 HETATM 4 N N3 ORO . . . D 4 5.809 19.91 5.399 1 39.19 ? N3 ORO 1003 A 1 HETATM 5 C C4 ORO . . . D 4 5.091 18.888 4.9 1 38.66 ? C4 ORO 1003 A 1 HETATM 6 O O4 ORO . . . D 4 4.918 18.8 3.669 1 38.73 ? O4 ORO 1003 A 1 HETATM 7 C C5 ORO . . . D 4 4.533 17.938 5.747 1 38.49 ? C5 ORO 1003 A 1 HETATM 8 C C6 ORO . . . D 4 4.739 18.061 7.115 1 39.5 ? C6 ORO 1003 A 1 HETATM 9 C C7 ORO . . . D 4 4.22 17.027 8.067 1 39.01 ? C7 ORO 1003 A 1 HETATM 10 O O71 ORO . . . D 4 3.094 16.476 7.985 1 38.12 ? O71 ORO 1003 A 1 HETATM 11 O O72 ORO . . . D 4 5.04 16.692 8.951 1 40.43 ? O72 ORO 1003 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #