data_3I68 # _model_server_result.job_id v_NaBmTLNr1Bk4m28EFv8Q _model_server_result.datetime_utc '2024-10-18 04:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i68 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 3I68 # _exptl.entry_id 3I68 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I68 _cell.length_a 85.917 _cell.length_b 85.917 _cell.length_c 138.697 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I68 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3I68 _atom_sites.fract_transf_matrix[1][1] 0.011639 _atom_sites.fract_transf_matrix[1][2] 0.00672 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J4Z A 1 1001 1001 J4Z J4Z . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 HOH A 1 1 1 HOH HOH . E 5 HOH A 2 2 2 HOH HOH . E 5 HOH A 3 3 3 HOH HOH . E 5 HOH A 4 4 4 HOH HOH . E 5 HOH A 5 5 5 HOH HOH . E 5 HOH A 6 6 6 HOH HOH . E 5 HOH A 7 7 7 HOH HOH . E 5 HOH A 8 8 8 HOH HOH . E 5 HOH A 9 9 9 HOH HOH . E 5 HOH A 10 10 10 HOH HOH . E 5 HOH A 11 11 11 HOH HOH . E 5 HOH A 12 12 12 HOH HOH . E 5 HOH A 13 13 13 HOH HOH . E 5 HOH A 14 14 14 HOH HOH . E 5 HOH A 15 15 15 HOH HOH . E 5 HOH A 16 16 16 HOH HOH . E 5 HOH A 17 17 17 HOH HOH . E 5 HOH A 18 18 18 HOH HOH . E 5 HOH A 19 19 19 HOH HOH . E 5 HOH A 20 20 20 HOH HOH . E 5 HOH A 21 21 21 HOH HOH . E 5 HOH A 22 22 22 HOH HOH . E 5 HOH A 23 23 23 HOH HOH . E 5 HOH A 24 24 24 HOH HOH . E 5 HOH A 25 25 25 HOH HOH . E 5 HOH A 26 26 26 HOH HOH . E 5 HOH A 27 27 27 HOH HOH . E 5 HOH A 28 28 28 HOH HOH . E 5 HOH A 29 29 29 HOH HOH . E 5 HOH A 30 30 30 HOH HOH . E 5 HOH A 31 31 31 HOH HOH . E 5 HOH A 32 32 32 HOH HOH . E 5 HOH A 33 33 33 HOH HOH . E 5 HOH A 34 34 34 HOH HOH . E 5 HOH A 35 35 35 HOH HOH . E 5 HOH A 36 36 36 HOH HOH . E 5 HOH A 37 37 37 HOH HOH . E 5 HOH A 38 38 38 HOH HOH . E 5 HOH A 39 39 39 HOH HOH . E 5 HOH A 40 40 40 HOH HOH . E 5 HOH A 41 41 41 HOH HOH . E 5 HOH A 42 42 42 HOH HOH . E 5 HOH A 43 43 43 HOH HOH . E 5 HOH A 44 44 44 HOH HOH . E 5 HOH A 45 45 45 HOH HOH . E 5 HOH A 46 46 46 HOH HOH . E 5 HOH A 47 47 47 HOH HOH . E 5 HOH A 48 48 48 HOH HOH . E 5 HOH A 49 49 49 HOH HOH . E 5 HOH A 50 50 50 HOH HOH . E 5 HOH A 51 51 51 HOH HOH . E 5 HOH A 52 52 52 HOH HOH . E 5 HOH A 53 53 53 HOH HOH . E 5 HOH A 54 54 54 HOH HOH . E 5 HOH A 55 55 55 HOH HOH . E 5 HOH A 56 56 56 HOH HOH . E 5 HOH A 57 57 57 HOH HOH . E 5 HOH A 58 58 58 HOH HOH . E 5 HOH A 59 59 59 HOH HOH . E 5 HOH A 60 60 60 HOH HOH . E 5 HOH A 61 61 61 HOH HOH . E 5 HOH A 62 62 62 HOH HOH . E 5 HOH A 63 63 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 -19.97 -8.11 4.291 1 48.46 ? N1 FMN 1002 A 1 HETATM 2 C C2 FMN . . . C 3 -18.863 -8.059 3.49 1 48.12 ? C2 FMN 1002 A 1 HETATM 3 O O2 FMN . . . C 3 -19.007 -7.853 2.275 1 48.28 ? O2 FMN 1002 A 1 HETATM 4 N N3 FMN . . . C 3 -17.619 -8.243 4.059 1 47.26 ? N3 FMN 1002 A 1 HETATM 5 C C4 FMN . . . C 3 -17.448 -8.467 5.421 1 47.74 ? C4 FMN 1002 A 1 HETATM 6 O O4 FMN . . . C 3 -16.321 -8.784 5.859 1 42.99 ? O4 FMN 1002 A 1 HETATM 7 C C4A FMN . . . C 3 -18.587 -8.517 6.237 1 47.57 ? C4A FMN 1002 A 1 HETATM 8 N N5 FMN . . . C 3 -18.492 -8.75 7.598 1 47.74 ? N5 FMN 1002 A 1 HETATM 9 C C5A FMN . . . C 3 -19.632 -8.81 8.393 1 48.11 ? C5A FMN 1002 A 1 HETATM 10 C C6 FMN . . . C 3 -19.53 -9.04 9.769 1 48.02 ? C6 FMN 1002 A 1 HETATM 11 C C7 FMN . . . C 3 -20.686 -9.106 10.564 1 48.27 ? C7 FMN 1002 A 1 HETATM 12 C C7M FMN . . . C 3 -20.566 -9.338 12.051 1 48.54 ? C7M FMN 1002 A 1 HETATM 13 C C8 FMN . . . C 3 -21.945 -8.933 9.976 1 48.09 ? C8 FMN 1002 A 1 HETATM 14 C C8M FMN . . . C 3 -23.207 -9.267 10.717 1 47.25 ? C8M FMN 1002 A 1 HETATM 15 C C9 FMN . . . C 3 -22.032 -8.694 8.605 1 48.06 ? C9 FMN 1002 A 1 HETATM 16 C C9A FMN . . . C 3 -20.89 -8.632 7.803 1 48.48 ? C9A FMN 1002 A 1 HETATM 17 N N10 FMN . . . C 3 -20.992 -8.387 6.43 1 47.71 ? N10 FMN 1002 A 1 HETATM 18 C C10 FMN . . . C 3 -19.848 -8.344 5.658 1 48.43 ? C10 FMN 1002 A 1 HETATM 19 C C1' FMN . . . C 3 -22.322 -8.111 5.774 1 47.42 ? C1' FMN 1002 A 1 HETATM 20 C C2' FMN . . . C 3 -22.946 -9.462 5.41 1 49.77 ? C2' FMN 1002 A 1 HETATM 21 O O2' FMN . . . C 3 -22.086 -10.119 4.51 1 50.04 ? O2' FMN 1002 A 1 HETATM 22 C C3' FMN . . . C 3 -24.348 -9.385 4.822 1 49.1 ? C3' FMN 1002 A 1 HETATM 23 O O3' FMN . . . C 3 -24.25 -8.733 3.574 1 50.55 ? O3' FMN 1002 A 1 HETATM 24 C C4' FMN . . . C 3 -25.337 -8.652 5.747 1 49.35 ? C4' FMN 1002 A 1 HETATM 25 O O4' FMN . . . C 3 -25.276 -9.195 7.048 1 50.08 ? O4' FMN 1002 A 1 HETATM 26 C C5' FMN . . . C 3 -26.773 -8.736 5.265 1 49.01 ? C5' FMN 1002 A 1 HETATM 27 O O5' FMN . . . C 3 -27.209 -10.073 5.35 1 51.84 ? O5' FMN 1002 A 1 HETATM 28 P P FMN . . . C 3 -28.156 -10.603 6.537 1 52.36 ? P FMN 1002 A 1 HETATM 29 O O1P FMN . . . C 3 -27.311 -10.675 7.782 1 51.51 ? O1P FMN 1002 A 1 HETATM 30 O O2P FMN . . . C 3 -28.665 -11.993 6.223 1 51.51 ? O2P FMN 1002 A 1 HETATM 31 O O3P FMN . . . C 3 -29.303 -9.638 6.713 1 50.7 ? O3P FMN 1002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #