data_3I6C
#
_model_server_result.job_id            '_cwxhitlp1TDwgmg3bc1hw' 
_model_server_result.datetime_utc      '2024-12-21 15:05:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i6c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":302}' 
#
_entry.id    3I6C 
#
_exptl.entry_id    3I6C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              337.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-fluoro-N-(naphthalen-2-ylcarbonyl)-D-phenylalanine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.99 
_cell.angle_gamma         90 
_cell.entry_id            3I6C 
_cell.length_a            117.967 
_cell.length_b            36.648 
_cell.length_c            51.293 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3I6C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C20 H16 F N O3' 
_chem_comp.formula_weight    337.344 
_chem_comp.id                GIA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-fluoro-N-(naphthalen-2-ylcarbonyl)-D-phenylalanine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 F1 GIA sing 83 n n 
C2 C1 GIA doub 84 n y 
C1 C6 GIA sing 85 n y 
C3 C2 GIA sing 86 n y 
C2 H2 GIA sing 87 n n 
C3 C4 GIA doub 88 n y 
C3 H3 GIA sing 89 n n 
C4 C5 GIA sing 90 n y 
C4 H4 GIA sing 91 n n 
C5 C6 GIA doub 92 n y 
C5 C7 GIA sing 93 n n 
C6 H6 GIA sing 94 n n 
C8 C7 GIA sing 95 n n 
C7 H7 GIA sing 96 n n 
C7 H7A GIA sing 97 n n 
N12 C8 GIA sing 98 n n 
C8 C9 GIA sing 99 n n 
C8 H8 GIA sing 100 n n 
O11 C9 GIA doub 101 n n 
C9 O10 GIA sing 102 n n 
O10 HO10 GIA sing 103 n n 
C13 N12 GIA sing 104 n n 
N12 HN12 GIA sing 105 n n 
C15 C13 GIA sing 106 n n 
C13 O14 GIA doub 107 n n 
C20 C15 GIA doub 108 n y 
C16 C15 GIA sing 109 n y 
C17 C16 GIA doub 110 n y 
C16 H16 GIA sing 111 n n 
C21 C17 GIA sing 112 n y 
C18 C17 GIA sing 113 n y 
C24 C18 GIA sing 114 n y 
C18 C19 GIA doub 115 n y 
C19 C20 GIA sing 116 n y 
C19 H19 GIA sing 117 n n 
C20 H20 GIA sing 118 n n 
C22 C21 GIA doub 119 n y 
C21 H21 GIA sing 120 n n 
C23 C22 GIA sing 121 n y 
C22 H22 GIA sing 122 n n 
C23 C24 GIA doub 123 n y 
C23 H23 GIA sing 124 n n 
C24 H24 GIA sing 125 n n 
#
_atom_sites.entry_id                     3I6C 
_atom_sites.fract_transf_matrix[1][1]    0.008477 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001646 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027287 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01986 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GIA A 1 301 301 GIA GIA . 
D 2 GIA A 1 303 303 GIA GIA . 
E 2 GIA B 1 302 302 GIA GIA . 
F 3 HOH A 1 1 1 HOH HOH . 
F 3 HOH A 2 2 2 HOH HOH . 
F 3 HOH A 3 3 3 HOH HOH . 
F 3 HOH A 4 7 7 HOH HOH . 
F 3 HOH A 5 8 8 HOH HOH . 
F 3 HOH A 6 10 10 HOH HOH . 
F 3 HOH A 7 11 11 HOH HOH . 
F 3 HOH A 8 14 14 HOH HOH . 
F 3 HOH A 9 15 15 HOH HOH . 
F 3 HOH A 10 17 17 HOH HOH . 
F 3 HOH A 11 18 18 HOH HOH . 
F 3 HOH A 12 20 20 HOH HOH . 
F 3 HOH A 13 22 22 HOH HOH . 
F 3 HOH A 14 23 23 HOH HOH . 
F 3 HOH A 15 25 25 HOH HOH . 
F 3 HOH A 16 27 27 HOH HOH . 
F 3 HOH A 17 32 32 HOH HOH . 
F 3 HOH A 18 33 33 HOH HOH . 
F 3 HOH A 19 35 35 HOH HOH . 
F 3 HOH A 20 38 38 HOH HOH . 
F 3 HOH A 21 39 39 HOH HOH . 
F 3 HOH A 22 40 40 HOH HOH . 
F 3 HOH A 23 164 43 HOH HOH . 
F 3 HOH A 24 165 45 HOH HOH . 
F 3 HOH A 25 166 166 HOH HOH . 
F 3 HOH A 26 167 51 HOH HOH . 
F 3 HOH A 27 168 53 HOH HOH . 
F 3 HOH A 28 169 54 HOH HOH . 
F 3 HOH A 29 170 56 HOH HOH . 
F 3 HOH A 30 171 57 HOH HOH . 
F 3 HOH A 31 172 58 HOH HOH . 
F 3 HOH A 32 173 59 HOH HOH . 
F 3 HOH A 33 174 60 HOH HOH . 
F 3 HOH A 34 175 61 HOH HOH . 
F 3 HOH A 35 176 64 HOH HOH . 
F 3 HOH A 36 177 65 HOH HOH . 
F 3 HOH A 37 178 66 HOH HOH . 
F 3 HOH A 38 179 67 HOH HOH . 
F 3 HOH A 39 180 69 HOH HOH . 
F 3 HOH A 40 181 70 HOH HOH . 
F 3 HOH A 41 182 71 HOH HOH . 
F 3 HOH A 42 183 72 HOH HOH . 
F 3 HOH A 43 184 73 HOH HOH . 
F 3 HOH A 44 185 74 HOH HOH . 
F 3 HOH A 45 186 75 HOH HOH . 
F 3 HOH A 46 187 76 HOH HOH . 
F 3 HOH A 47 188 77 HOH HOH . 
F 3 HOH A 48 189 78 HOH HOH . 
F 3 HOH A 49 190 79 HOH HOH . 
F 3 HOH A 50 191 81 HOH HOH . 
F 3 HOH A 51 192 83 HOH HOH . 
F 3 HOH A 52 193 85 HOH HOH . 
F 3 HOH A 53 194 86 HOH HOH . 
F 3 HOH A 54 195 88 HOH HOH . 
F 3 HOH A 55 196 89 HOH HOH . 
F 3 HOH A 56 197 90 HOH HOH . 
F 3 HOH A 57 198 94 HOH HOH . 
F 3 HOH A 58 199 95 HOH HOH . 
F 3 HOH A 59 200 96 HOH HOH . 
F 3 HOH A 60 201 97 HOH HOH . 
F 3 HOH A 61 202 98 HOH HOH . 
F 3 HOH A 62 203 100 HOH HOH . 
F 3 HOH A 63 204 101 HOH HOH . 
F 3 HOH A 64 205 102 HOH HOH . 
F 3 HOH A 65 206 103 HOH HOH . 
F 3 HOH A 66 207 106 HOH HOH . 
F 3 HOH A 67 208 107 HOH HOH . 
F 3 HOH A 68 209 108 HOH HOH . 
F 3 HOH A 69 210 109 HOH HOH . 
F 3 HOH A 70 211 111 HOH HOH . 
F 3 HOH A 71 212 112 HOH HOH . 
F 3 HOH A 72 213 113 HOH HOH . 
F 3 HOH A 73 214 114 HOH HOH . 
F 3 HOH A 74 215 115 HOH HOH . 
F 3 HOH A 75 216 116 HOH HOH . 
F 3 HOH A 76 217 117 HOH HOH . 
F 3 HOH A 77 218 118 HOH HOH . 
F 3 HOH A 78 219 122 HOH HOH . 
F 3 HOH A 79 220 123 HOH HOH . 
F 3 HOH A 80 221 124 HOH HOH . 
F 3 HOH A 81 222 125 HOH HOH . 
F 3 HOH A 82 223 128 HOH HOH . 
F 3 HOH A 83 224 129 HOH HOH . 
F 3 HOH A 84 225 131 HOH HOH . 
F 3 HOH A 85 226 132 HOH HOH . 
F 3 HOH A 86 227 134 HOH HOH . 
F 3 HOH A 87 228 135 HOH HOH . 
F 3 HOH A 88 229 137 HOH HOH . 
F 3 HOH A 89 230 138 HOH HOH . 
F 3 HOH A 90 231 139 HOH HOH . 
F 3 HOH A 91 232 144 HOH HOH . 
F 3 HOH A 92 233 146 HOH HOH . 
F 3 HOH A 93 234 147 HOH HOH . 
F 3 HOH A 94 235 151 HOH HOH . 
F 3 HOH A 95 236 152 HOH HOH . 
F 3 HOH A 96 237 153 HOH HOH . 
F 3 HOH A 97 238 156 HOH HOH . 
F 3 HOH A 98 239 158 HOH HOH . 
F 3 HOH A 99 240 159 HOH HOH . 
F 3 HOH A 100 241 160 HOH HOH . 
F 3 HOH A 101 242 162 HOH HOH . 
F 3 HOH A 102 243 163 HOH HOH . 
G 3 HOH B 1 4 4 HOH HOH . 
G 3 HOH B 2 5 5 HOH HOH . 
G 3 HOH B 3 6 6 HOH HOH . 
G 3 HOH B 4 9 9 HOH HOH . 
G 3 HOH B 5 12 12 HOH HOH . 
G 3 HOH B 6 13 13 HOH HOH . 
G 3 HOH B 7 16 16 HOH HOH . 
G 3 HOH B 8 19 19 HOH HOH . 
G 3 HOH B 9 21 21 HOH HOH . 
G 3 HOH B 10 24 24 HOH HOH . 
G 3 HOH B 11 26 26 HOH HOH . 
G 3 HOH B 12 28 28 HOH HOH . 
G 3 HOH B 13 29 29 HOH HOH . 
G 3 HOH B 14 30 30 HOH HOH . 
G 3 HOH B 15 31 31 HOH HOH . 
G 3 HOH B 16 34 34 HOH HOH . 
G 3 HOH B 17 36 36 HOH HOH . 
G 3 HOH B 18 37 37 HOH HOH . 
G 3 HOH B 19 164 164 HOH HOH . 
G 3 HOH B 20 165 165 HOH HOH . 
G 3 HOH B 21 166 41 HOH HOH . 
G 3 HOH B 22 167 42 HOH HOH . 
G 3 HOH B 23 168 44 HOH HOH . 
G 3 HOH B 24 169 46 HOH HOH . 
G 3 HOH B 25 170 47 HOH HOH . 
G 3 HOH B 26 171 48 HOH HOH . 
G 3 HOH B 27 172 49 HOH HOH . 
G 3 HOH B 28 173 50 HOH HOH . 
G 3 HOH B 29 174 52 HOH HOH . 
G 3 HOH B 30 175 55 HOH HOH . 
G 3 HOH B 31 176 62 HOH HOH . 
G 3 HOH B 32 177 63 HOH HOH . 
G 3 HOH B 33 178 68 HOH HOH . 
G 3 HOH B 34 179 80 HOH HOH . 
G 3 HOH B 35 180 82 HOH HOH . 
G 3 HOH B 36 181 84 HOH HOH . 
G 3 HOH B 37 182 87 HOH HOH . 
G 3 HOH B 38 183 91 HOH HOH . 
G 3 HOH B 39 184 92 HOH HOH . 
G 3 HOH B 40 185 93 HOH HOH . 
G 3 HOH B 41 186 99 HOH HOH . 
G 3 HOH B 42 187 104 HOH HOH . 
G 3 HOH B 43 188 105 HOH HOH . 
G 3 HOH B 44 189 110 HOH HOH . 
G 3 HOH B 45 190 119 HOH HOH . 
G 3 HOH B 46 191 120 HOH HOH . 
G 3 HOH B 47 192 121 HOH HOH . 
G 3 HOH B 48 193 126 HOH HOH . 
G 3 HOH B 49 194 127 HOH HOH . 
G 3 HOH B 50 195 130 HOH HOH . 
G 3 HOH B 51 196 133 HOH HOH . 
G 3 HOH B 52 197 136 HOH HOH . 
G 3 HOH B 53 198 140 HOH HOH . 
G 3 HOH B 54 199 141 HOH HOH . 
G 3 HOH B 55 200 142 HOH HOH . 
G 3 HOH B 56 201 143 HOH HOH . 
G 3 HOH B 57 202 145 HOH HOH . 
G 3 HOH B 58 203 148 HOH HOH . 
G 3 HOH B 59 204 149 HOH HOH . 
G 3 HOH B 60 205 150 HOH HOH . 
G 3 HOH B 61 206 154 HOH HOH . 
G 3 HOH B 62 207 155 HOH HOH . 
G 3 HOH B 63 208 157 HOH HOH . 
G 3 HOH B 64 209 161 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F1 GIA . . . E 2 -4.464 24.863 50.4 1 36.78 ? F1 GIA 302 B 1 
HETATM 2 C C1 GIA . . . E 2 -4.514 23.621 49.863 1 26.78 ? C1 GIA 302 B 1 
HETATM 3 C C2 GIA . . . E 2 -4.339 23.642 48.489 1 27.78 ? C2 GIA 302 B 1 
HETATM 4 C C3 GIA . . . E 2 -4.236 22.413 47.865 1 26.93 ? C3 GIA 302 B 1 
HETATM 5 C C4 GIA . . . E 2 -4.358 21.249 48.579 1 26.44 ? C4 GIA 302 B 1 
HETATM 6 C C5 GIA . . . E 2 -4.546 21.176 49.943 1 25.39 ? C5 GIA 302 B 1 
HETATM 7 C C6 GIA . . . E 2 -4.65 22.427 50.559 1 27.23 ? C6 GIA 302 B 1 
HETATM 8 C C7 GIA . . . E 2 -4.695 19.86 50.678 1 23.24 ? C7 GIA 302 B 1 
HETATM 9 C C8 GIA . . . E 2 -6.05 19.152 50.503 1 25.11 ? C8 GIA 302 B 1 
HETATM 10 C C9 GIA . . . E 2 -6.009 17.786 51.153 1 29 ? C9 GIA 302 B 1 
HETATM 11 O O10 GIA . . . E 2 -5.98 17.736 52.343 1 30.72 ? O10 GIA 302 B 1 
HETATM 12 O O11 GIA . . . E 2 -6.004 16.681 50.386 1 32.38 ? O11 GIA 302 B 1 
HETATM 13 N N12 GIA . . . E 2 -6.221 18.907 49.079 1 27.28 ? N12 GIA 302 B 1 
HETATM 14 C C13 GIA . . . E 2 -7.207 19.645 48.477 1 29.72 ? C13 GIA 302 B 1 
HETATM 15 O O14 GIA . . . E 2 -7.871 20.397 49.177 1 33.35 ? O14 GIA 302 B 1 
HETATM 16 C C15 GIA . . . E 2 -7.316 19.518 47.008 1 28.33 ? C15 GIA 302 B 1 
HETATM 17 C C16 GIA . . . E 2 -7.072 18.361 46.306 1 28.16 ? C16 GIA 302 B 1 
HETATM 18 C C17 GIA . . . E 2 -7.077 18.361 44.905 1 30.93 ? C17 GIA 302 B 1 
HETATM 19 C C18 GIA . . . E 2 -7.429 19.542 44.189 1 32 ? C18 GIA 302 B 1 
HETATM 20 C C19 GIA . . . E 2 -7.668 20.719 44.923 1 31.06 ? C19 GIA 302 B 1 
HETATM 21 C C20 GIA . . . E 2 -7.546 20.72 46.283 1 30.37 ? C20 GIA 302 B 1 
HETATM 22 C C21 GIA . . . E 2 -6.854 17.188 44.153 1 33.36 ? C21 GIA 302 B 1 
HETATM 23 C C22 GIA . . . E 2 -6.877 17.2 42.782 1 34.09 ? C22 GIA 302 B 1 
HETATM 24 C C23 GIA . . . E 2 -7.113 18.39 42.105 1 33.78 ? C23 GIA 302 B 1 
HETATM 25 C C24 GIA . . . E 2 -7.373 19.541 42.779 1 32.74 ? C24 GIA 302 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           623 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           25 
#