data_3I6D
#
_model_server_result.job_id            AIjAqTrs8ob7qpEr9KvtPA 
_model_server_result.datetime_utc      '2024-12-26 14:43:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":600}' 
#
_entry.id    3I6D 
#
_exptl.entry_id    3I6D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3I6D 
_cell.length_a            96.175 
_cell.length_b            96.175 
_cell.length_c            299.823 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3I6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,I 1 1 
B,F,G,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 115 n n 
PA O2A FAD sing 116 n n 
PA O5B FAD sing 117 n n 
PA O3P FAD sing 118 n n 
O2A HOA2 FAD sing 119 n n 
O5B C5B FAD sing 120 n n 
C5B C4B FAD sing 121 n n 
C5B H51A FAD sing 122 n n 
C5B H52A FAD sing 123 n n 
C4B O4B FAD sing 124 n n 
C4B C3B FAD sing 125 n n 
C4B H4B FAD sing 126 n n 
O4B C1B FAD sing 127 n n 
C3B O3B FAD sing 128 n n 
C3B C2B FAD sing 129 n n 
C3B H3B FAD sing 130 n n 
O3B HO3A FAD sing 131 n n 
C2B O2B FAD sing 132 n n 
C2B C1B FAD sing 133 n n 
C2B H2B FAD sing 134 n n 
O2B HO2A FAD sing 135 n n 
C1B N9A FAD sing 136 n n 
C1B H1B FAD sing 137 n n 
N9A C8A FAD sing 138 n y 
N9A C4A FAD sing 139 n y 
C8A N7A FAD doub 140 n y 
C8A H8A FAD sing 141 n n 
N7A C5A FAD sing 142 n y 
C5A C6A FAD sing 143 n y 
C5A C4A FAD doub 144 n y 
C6A N6A FAD sing 145 n n 
C6A N1A FAD doub 146 n y 
N6A H61A FAD sing 147 n n 
N6A H62A FAD sing 148 n n 
N1A C2A FAD sing 149 n y 
C2A N3A FAD doub 150 n y 
C2A H2A FAD sing 151 n n 
N3A C4A FAD sing 152 n y 
N1 C2 FAD sing 153 n n 
N1 C10 FAD doub 154 n n 
C2 O2 FAD doub 155 n n 
C2 N3 FAD sing 156 n n 
N3 C4 FAD sing 157 n n 
N3 HN3 FAD sing 158 n n 
C4 O4 FAD doub 159 n n 
C4 C4X FAD sing 160 n n 
C4X N5 FAD doub 161 n n 
C4X C10 FAD sing 162 n n 
N5 C5X FAD sing 163 n n 
C5X C6 FAD doub 164 n y 
C5X C9A FAD sing 165 n y 
C6 C7 FAD sing 166 n y 
C6 H6 FAD sing 167 n n 
C7 C7M FAD sing 168 n n 
C7 C8 FAD doub 169 n y 
C7M HM71 FAD sing 170 n n 
C7M HM72 FAD sing 171 n n 
C7M HM73 FAD sing 172 n n 
C8 C8M FAD sing 173 n n 
C8 C9 FAD sing 174 n y 
C8M HM81 FAD sing 175 n n 
C8M HM82 FAD sing 176 n n 
C8M HM83 FAD sing 177 n n 
C9 C9A FAD doub 178 n y 
C9 H9 FAD sing 179 n n 
C9A N10 FAD sing 180 n n 
N10 C10 FAD sing 181 n n 
N10 C1' FAD sing 182 n n 
C1' C2' FAD sing 183 n n 
C1' "H1'1" FAD sing 184 n n 
C1' "H1'2" FAD sing 185 n n 
C2' O2' FAD sing 186 n n 
C2' C3' FAD sing 187 n n 
C2' H2' FAD sing 188 n n 
O2' HO2' FAD sing 189 n n 
C3' O3' FAD sing 190 n n 
C3' C4' FAD sing 191 n n 
C3' H3' FAD sing 192 n n 
O3' HO3' FAD sing 193 n n 
C4' O4' FAD sing 194 n n 
C4' C5' FAD sing 195 n n 
C4' H4' FAD sing 196 n n 
O4' HO4' FAD sing 197 n n 
C5' O5' FAD sing 198 n n 
C5' "H5'1" FAD sing 199 n n 
C5' "H5'2" FAD sing 200 n n 
O5' P FAD sing 201 n n 
P O1P FAD doub 202 n n 
P O2P FAD sing 203 n n 
P O3P FAD sing 204 n n 
O2P HOP2 FAD sing 205 n n 
#
_atom_sites.entry_id                     3I6D 
_atom_sites.fract_transf_matrix[1][1]    0.010398 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010398 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 600 600 FAD FAD . 
D 3 ACJ A 1 471 100 ACJ ACJ . 
E 4 PO4 A 1 472 1 PO4 PO4 . 
F 2 FAD B 1 700 700 FAD FAD . 
G 3 ACJ B 1 471 200 ACJ ACJ . 
H 4 PO4 B 1 472 8 PO4 PO4 . 
I 5 HOH A 1 473 1 HOH HOH . 
I 5 HOH A 2 474 3 HOH HOH . 
I 5 HOH A 3 475 4 HOH HOH . 
I 5 HOH A 4 476 5 HOH HOH . 
I 5 HOH A 5 477 6 HOH HOH . 
J 5 HOH B 1 473 7 HOH HOH . 
J 5 HOH B 2 474 9 HOH HOH . 
J 5 HOH B 3 475 10 HOH HOH . 
J 5 HOH B 4 476 11 HOH HOH . 
J 5 HOH B 5 477 12 HOH HOH . 
J 5 HOH B 6 478 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 9.64 -34.663 21.487 1 62.44 ? PA FAD 600 A 1 
HETATM 2 O O1A FAD . . . C 2 9.875 -35.481 20.288 1 59.23 ? O1A FAD 600 A 1 
HETATM 3 O O2A FAD . . . C 2 9.522 -33.203 21.365 1 60.68 ? O2A FAD 600 A 1 
HETATM 4 O O5B FAD . . . C 2 10.774 -34.931 22.574 1 62.53 ? O5B FAD 600 A 1 
HETATM 5 C C5B FAD . . . C 2 11.195 -36.258 22.951 1 60.6 ? C5B FAD 600 A 1 
HETATM 6 C C4B FAD . . . C 2 12.626 -36.098 23.496 1 61.1 ? C4B FAD 600 A 1 
HETATM 7 O O4B FAD . . . C 2 13.178 -37.378 23.714 1 61.76 ? O4B FAD 600 A 1 
HETATM 8 C C3B FAD . . . C 2 13.602 -35.396 22.557 1 60.49 ? C3B FAD 600 A 1 
HETATM 9 O O3B FAD . . . C 2 14.022 -34.161 23.074 1 61.32 ? O3B FAD 600 A 1 
HETATM 10 C C2B FAD . . . C 2 14.706 -36.4 22.382 1 60.07 ? C2B FAD 600 A 1 
HETATM 11 O O2B FAD . . . C 2 15.99 -35.875 22.147 1 59.94 ? O2B FAD 600 A 1 
HETATM 12 C C1B FAD . . . C 2 14.574 -37.235 23.653 1 60.06 ? C1B FAD 600 A 1 
HETATM 13 N N9A FAD . . . C 2 15.168 -38.591 23.608 1 59.06 ? N9A FAD 600 A 1 
HETATM 14 C C8A FAD . . . C 2 15.044 -39.528 22.609 1 55.89 ? C8A FAD 600 A 1 
HETATM 15 N N7A FAD . . . C 2 15.697 -40.651 22.873 1 55.73 ? N7A FAD 600 A 1 
HETATM 16 C C5A FAD . . . C 2 16.274 -40.438 24.095 1 57.16 ? C5A FAD 600 A 1 
HETATM 17 C C6A FAD . . . C 2 17.087 -41.253 24.913 1 56.87 ? C6A FAD 600 A 1 
HETATM 18 N N6A FAD . . . C 2 17.463 -42.475 24.605 1 56.02 ? N6A FAD 600 A 1 
HETATM 19 N N1A FAD . . . C 2 17.509 -40.723 26.103 1 57.33 ? N1A FAD 600 A 1 
HETATM 20 C C2A FAD . . . C 2 17.138 -39.445 26.458 1 58.36 ? C2A FAD 600 A 1 
HETATM 21 N N3A FAD . . . C 2 16.361 -38.62 25.729 1 57.99 ? N3A FAD 600 A 1 
HETATM 22 C C4A FAD . . . C 2 15.953 -39.155 24.56 1 58.34 ? C4A FAD 600 A 1 
HETATM 23 N N1 FAD . . . C 2 2.254 -29.23 17.046 1 79.09 ? N1 FAD 600 A 1 
HETATM 24 C C2 FAD . . . C 2 1.315 -28.223 17.178 1 78.47 ? C2 FAD 600 A 1 
HETATM 25 O O2 FAD . . . C 2 0.449 -28.27 18.052 1 75.32 ? O2 FAD 600 A 1 
HETATM 26 N N3 FAD . . . C 2 1.381 -27.132 16.288 1 79.78 ? N3 FAD 600 A 1 
HETATM 27 C C4 FAD . . . C 2 2.323 -27.005 15.289 1 81.28 ? C4 FAD 600 A 1 
HETATM 28 O O4 FAD . . . C 2 2.323 -26.004 14.547 1 82.92 ? O4 FAD 600 A 1 
HETATM 29 C C4X FAD . . . C 2 3.287 -28.041 15.155 1 81.23 ? C4X FAD 600 A 1 
HETATM 30 N N5 FAD . . . C 2 4.292 -27.979 14.17 1 81.82 ? N5 FAD 600 A 1 
HETATM 31 C C5X FAD . . . C 2 5.262 -28.982 14.077 1 81.65 ? C5X FAD 600 A 1 
HETATM 32 C C6 FAD . . . C 2 6.275 -28.9 13.117 1 82.9 ? C6 FAD 600 A 1 
HETATM 33 C C7 FAD . . . C 2 7.288 -29.87 13.014 1 83.64 ? C7 FAD 600 A 1 
HETATM 34 C C7M FAD . . . C 2 8.357 -29.727 11.971 1 83.87 ? C7M FAD 600 A 1 
HETATM 35 C C8 FAD . . . C 2 7.269 -30.978 13.925 1 83.24 ? C8 FAD 600 A 1 
HETATM 36 C C8M FAD . . . C 2 8.336 -32.055 13.866 1 83.21 ? C8M FAD 600 A 1 
HETATM 37 C C9 FAD . . . C 2 6.245 -31.092 14.9 1 81.97 ? C9 FAD 600 A 1 
HETATM 38 C C9A FAD . . . C 2 5.227 -30.106 14.999 1 80.63 ? C9A FAD 600 A 1 
HETATM 39 N N10 FAD . . . C 2 4.174 -30.166 15.982 1 78.36 ? N10 FAD 600 A 1 
HETATM 40 C C10 FAD . . . C 2 3.219 -29.141 16.064 1 79.71 ? C10 FAD 600 A 1 
HETATM 41 C C1' FAD . . . C 2 4.059 -31.303 16.956 1 75.47 ? C1' FAD 600 A 1 
HETATM 42 C C2' FAD . . . C 2 4.674 -31.04 18.308 1 73.72 ? C2' FAD 600 A 1 
HETATM 43 O O2' FAD . . . C 2 5.88 -30.347 18.12 1 73.16 ? O2' FAD 600 A 1 
HETATM 44 C C3' FAD . . . C 2 4.899 -32.396 19.003 1 72.44 ? C3' FAD 600 A 1 
HETATM 45 O O3' FAD . . . C 2 3.668 -33.103 19.186 1 72.39 ? O3' FAD 600 A 1 
HETATM 46 C C4' FAD . . . C 2 5.52 -32.327 20.409 1 71.86 ? C4' FAD 600 A 1 
HETATM 47 O O4' FAD . . . C 2 6.653 -31.475 20.454 1 71.54 ? O4' FAD 600 A 1 
HETATM 48 C C5' FAD . . . C 2 5.923 -33.718 20.869 1 70.22 ? C5' FAD 600 A 1 
HETATM 49 O O5' FAD . . . C 2 6.518 -33.524 22.136 1 68.27 ? O5' FAD 600 A 1 
HETATM 50 P P FAD . . . C 2 7.171 -34.671 22.962 1 65.28 ? P FAD 600 A 1 
HETATM 51 O O1P FAD . . . C 2 7.675 -34.006 24.178 1 67.52 ? O1P FAD 600 A 1 
HETATM 52 O O2P FAD . . . C 2 6.195 -35.795 23.186 1 68.67 ? O2P FAD 600 A 1 
HETATM 53 O O3P FAD . . . C 2 8.315 -35.266 22.096 1 63.99 ? O3P FAD 600 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#