data_3I6R
#
_model_server_result.job_id            49bmkTPwOq7K7T3F2IZ4mQ 
_model_server_result.datetime_utc      '2024-11-25 19:21:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i6r 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1003}' 
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_entry.id    3I6R 
#
_exptl.entry_id    3I6R 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              156.096 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OROTIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3I6R 
_cell.length_a            85.442 
_cell.length_b            85.442 
_cell.length_c            138.554 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3I6R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H4 N2 O4' 
_chem_comp.formula_weight    156.096 
_chem_comp.id                ORO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OROTIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 ORO sing 324 n y 
N1 C6 ORO sing 325 n y 
N1 HN1 ORO sing 326 n n 
C2 O2 ORO doub 327 n n 
C2 N3 ORO sing 328 n y 
N3 C4 ORO sing 329 n y 
N3 HN3 ORO sing 330 n n 
C4 O4 ORO doub 331 n n 
C4 C5 ORO sing 332 n y 
C5 C6 ORO doub 333 n y 
C5 H5 ORO sing 334 n n 
C6 C7 ORO sing 335 n n 
C7 O71 ORO doub 336 n n 
C7 O72 ORO sing 337 n n 
O72 HO7 ORO sing 338 n n 
#
_atom_sites.entry_id                     3I6R 
_atom_sites.fract_transf_matrix[1][1]    0.011704 
_atom_sites.fract_transf_matrix[1][2]    0.006757 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013514 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007217 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 J5Z A 1 1001 1001 J5Z J5Z . 
C 3 FMN A 1 1002 1002 FMN FMN . 
D 4 ORO A 1 1003 1003 ORO ORO . 
E 5 HOH A 1 1 1 HOH HOH . 
E 5 HOH A 2 2 2 HOH HOH . 
E 5 HOH A 3 3 3 HOH HOH . 
E 5 HOH A 4 4 4 HOH HOH . 
E 5 HOH A 5 5 5 HOH HOH . 
E 5 HOH A 6 6 6 HOH HOH . 
E 5 HOH A 7 7 7 HOH HOH . 
E 5 HOH A 8 8 8 HOH HOH . 
E 5 HOH A 9 9 9 HOH HOH . 
E 5 HOH A 10 10 10 HOH HOH . 
E 5 HOH A 11 11 11 HOH HOH . 
E 5 HOH A 12 12 12 HOH HOH . 
E 5 HOH A 13 13 13 HOH HOH . 
E 5 HOH A 14 14 14 HOH HOH . 
E 5 HOH A 15 15 15 HOH HOH . 
E 5 HOH A 16 16 16 HOH HOH . 
E 5 HOH A 17 17 17 HOH HOH . 
E 5 HOH A 18 18 18 HOH HOH . 
E 5 HOH A 19 19 19 HOH HOH . 
E 5 HOH A 20 20 20 HOH HOH . 
E 5 HOH A 21 21 21 HOH HOH . 
E 5 HOH A 22 22 22 HOH HOH . 
E 5 HOH A 23 23 23 HOH HOH . 
E 5 HOH A 24 24 24 HOH HOH . 
E 5 HOH A 25 25 25 HOH HOH . 
E 5 HOH A 26 26 26 HOH HOH . 
E 5 HOH A 27 27 27 HOH HOH . 
E 5 HOH A 28 28 28 HOH HOH . 
E 5 HOH A 29 29 29 HOH HOH . 
E 5 HOH A 30 30 30 HOH HOH . 
E 5 HOH A 31 31 31 HOH HOH . 
E 5 HOH A 32 32 32 HOH HOH . 
E 5 HOH A 33 33 33 HOH HOH . 
E 5 HOH A 34 34 34 HOH HOH . 
E 5 HOH A 35 35 35 HOH HOH . 
E 5 HOH A 36 36 36 HOH HOH . 
E 5 HOH A 37 37 37 HOH HOH . 
E 5 HOH A 38 38 38 HOH HOH . 
E 5 HOH A 39 39 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 ORO . . . D 4 5.474 18.87 8.133 1 61.1 ? N1 ORO 1003 A 1 
HETATM 2 C C2 ORO . . . D 4 6.003 19.765 7.284 1 61.47 ? C2 ORO 1003 A 1 
HETATM 3 O O2 ORO . . . D 4 6.686 20.71 7.731 1 62.2 ? O2 ORO 1003 A 1 
HETATM 4 N N3 ORO . . . D 4 5.819 19.665 5.96 1 61.36 ? N3 ORO 1003 A 1 
HETATM 5 C C4 ORO . . . D 4 5.09 18.667 5.45 1 61.65 ? C4 ORO 1003 A 1 
HETATM 6 O O4 ORO . . . D 4 4.929 18.582 4.215 1 61.61 ? O4 ORO 1003 A 1 
HETATM 7 C C5 ORO . . . D 4 4.522 17.724 6.302 1 61.86 ? C5 ORO 1003 A 1 
HETATM 8 C C6 ORO . . . D 4 4.734 17.85 7.676 1 61.56 ? C6 ORO 1003 A 1 
HETATM 9 C C7 ORO . . . D 4 4.159 16.849 8.64 1 61.41 ? C7 ORO 1003 A 1 
HETATM 10 O O71 ORO . . . D 4 3.052 16.312 8.409 1 60.59 ? O71 ORO 1003 A 1 
HETATM 11 O O72 ORO . . . D 4 4.833 16.562 9.656 1 61.56 ? O72 ORO 1003 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
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