data_3I6V
#
_model_server_result.job_id            EuN44Bp0lRx8qabYw7v-TQ 
_model_server_result.datetime_utc      '2025-01-02 17:45:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i6v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    3I6V 
#
_exptl.entry_id    3I6V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.195 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            LYSINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3I6V 
_cell.length_a            70.931 
_cell.length_b            70.931 
_cell.length_c            141.359 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3I6V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        95 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 79 A ASP 125 1_555 C NA NA . A NA 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc2 A OD1 ASP 79 A ASP 125 1_555 C NA NA . A NA 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc3 A O ILE 82 A ILE 128 1_555 C NA NA . A NA 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc4 A OD1 ASP 83 A ASP 129 1_555 C NA NA . A NA 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc5 A OE2 GLU 186 A GLU 232 1_555 C NA NA . A NA 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
#
_chem_comp.formula           'C6 H15 N2 O2 1' 
_chem_comp.formula_weight    147.195 
_chem_comp.id                LYS 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              LYSINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA LYS sing 207 n n 
N H LYS sing 208 n n 
N H2 LYS sing 209 n n 
CA C LYS sing 210 n n 
CA CB LYS sing 211 n n 
CA HA LYS sing 212 n n 
C O LYS doub 213 n n 
C OXT LYS sing 214 n n 
CB CG LYS sing 215 n n 
CB HB2 LYS sing 216 n n 
CB HB3 LYS sing 217 n n 
CG CD LYS sing 218 n n 
CG HG2 LYS sing 219 n n 
CG HG3 LYS sing 220 n n 
CD CE LYS sing 221 n n 
CD HD2 LYS sing 222 n n 
CD HD3 LYS sing 223 n n 
CE NZ LYS sing 224 n n 
CE HE2 LYS sing 225 n n 
CE HE3 LYS sing 226 n n 
NZ HZ1 LYS sing 227 n n 
NZ HZ2 LYS sing 228 n n 
NZ HZ3 LYS sing 229 n n 
OXT HXT LYS sing 230 n n 
#
_atom_sites.entry_id                     3I6V 
_atom_sites.fract_transf_matrix[1][1]    0.014098 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007074 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LYS A 1 1 1 LYS LYS . 
C 3 NA A 1 279 1 NA NA . 
D 4 GOL A 1 280 1 GOL GOL . 
E 5 HOH A 1 2 2 HOH HOH . 
E 5 HOH A 2 4 4 HOH HOH . 
E 5 HOH A 3 5 5 HOH HOH . 
E 5 HOH A 4 6 6 HOH HOH . 
E 5 HOH A 5 7 7 HOH HOH . 
E 5 HOH A 6 8 8 HOH HOH . 
E 5 HOH A 7 9 9 HOH HOH . 
E 5 HOH A 8 10 10 HOH HOH . 
E 5 HOH A 9 11 11 HOH HOH . 
E 5 HOH A 10 12 12 HOH HOH . 
E 5 HOH A 11 13 13 HOH HOH . 
E 5 HOH A 12 14 14 HOH HOH . 
E 5 HOH A 13 15 15 HOH HOH . 
E 5 HOH A 14 16 16 HOH HOH . 
E 5 HOH A 15 17 17 HOH HOH . 
E 5 HOH A 16 18 18 HOH HOH . 
E 5 HOH A 17 19 19 HOH HOH . 
E 5 HOH A 18 20 20 HOH HOH . 
E 5 HOH A 19 21 21 HOH HOH . 
E 5 HOH A 20 23 23 HOH HOH . 
E 5 HOH A 21 24 24 HOH HOH . 
E 5 HOH A 22 25 25 HOH HOH . 
E 5 HOH A 23 26 26 HOH HOH . 
E 5 HOH A 24 27 27 HOH HOH . 
E 5 HOH A 25 28 28 HOH HOH . 
E 5 HOH A 26 29 29 HOH HOH . 
E 5 HOH A 27 30 30 HOH HOH . 
E 5 HOH A 28 31 31 HOH HOH . 
E 5 HOH A 29 32 32 HOH HOH . 
E 5 HOH A 30 33 33 HOH HOH . 
E 5 HOH A 31 34 34 HOH HOH . 
E 5 HOH A 32 35 35 HOH HOH . 
E 5 HOH A 33 36 36 HOH HOH . 
E 5 HOH A 34 37 37 HOH HOH . 
E 5 HOH A 35 38 38 HOH HOH . 
E 5 HOH A 36 39 39 HOH HOH . 
E 5 HOH A 37 40 40 HOH HOH . 
E 5 HOH A 38 41 41 HOH HOH . 
E 5 HOH A 39 42 42 HOH HOH . 
E 5 HOH A 40 43 43 HOH HOH . 
E 5 HOH A 41 44 44 HOH HOH . 
E 5 HOH A 42 45 45 HOH HOH . 
E 5 HOH A 43 46 46 HOH HOH . 
E 5 HOH A 44 281 1 HOH HOH . 
E 5 HOH A 45 282 47 HOH HOH . 
E 5 HOH A 46 283 48 HOH HOH . 
E 5 HOH A 47 284 49 HOH HOH . 
E 5 HOH A 48 285 50 HOH HOH . 
E 5 HOH A 49 286 51 HOH HOH . 
E 5 HOH A 50 287 52 HOH HOH . 
E 5 HOH A 51 288 53 HOH HOH . 
E 5 HOH A 52 289 54 HOH HOH . 
E 5 HOH A 53 290 55 HOH HOH . 
E 5 HOH A 54 291 56 HOH HOH . 
E 5 HOH A 55 292 57 HOH HOH . 
E 5 HOH A 56 293 58 HOH HOH . 
E 5 HOH A 57 294 59 HOH HOH . 
E 5 HOH A 58 295 60 HOH HOH . 
E 5 HOH A 59 296 61 HOH HOH . 
E 5 HOH A 60 297 62 HOH HOH . 
E 5 HOH A 61 298 63 HOH HOH . 
E 5 HOH A 62 299 64 HOH HOH . 
E 5 HOH A 63 300 65 HOH HOH . 
E 5 HOH A 64 301 66 HOH HOH . 
E 5 HOH A 65 302 67 HOH HOH . 
E 5 HOH A 66 303 68 HOH HOH . 
E 5 HOH A 67 304 69 HOH HOH . 
E 5 HOH A 68 305 70 HOH HOH . 
E 5 HOH A 69 306 71 HOH HOH . 
E 5 HOH A 70 307 72 HOH HOH . 
E 5 HOH A 71 308 73 HOH HOH . 
E 5 HOH A 72 309 74 HOH HOH . 
E 5 HOH A 73 310 75 HOH HOH . 
E 5 HOH A 74 311 76 HOH HOH . 
E 5 HOH A 75 312 77 HOH HOH . 
E 5 HOH A 76 313 78 HOH HOH . 
E 5 HOH A 77 314 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N LYS . . . B 2 -52.812 -30.807 -9.142 1 19.25 ? N LYS 1 A 1 
HETATM 2 C CA LYS . . . B 2 -53.079 -29.5 -9.828 1 19.15 ? CA LYS 1 A 1 
HETATM 3 C C LYS . . . B 2 -52.048 -28.463 -9.443 1 19.85 ? C LYS 1 A 1 
HETATM 4 O O LYS . . . B 2 -51.245 -28.73 -8.538 1 20.69 ? O LYS 1 A 1 
HETATM 5 C CB LYS . . . B 2 -54.5 -28.988 -9.484 1 18.75 ? CB LYS 1 A 1 
HETATM 6 C CG LYS . . . B 2 -54.708 -28.584 -8.024 1 17.98 ? CG LYS 1 A 1 
HETATM 7 C CD LYS . . . B 2 -56.2 -28.161 -7.794 1 20.74 ? CD LYS 1 A 1 
HETATM 8 C CE LYS . . . B 2 -56.477 -27.651 -6.332 1 20.73 ? CE LYS 1 A 1 
HETATM 9 N NZ LYS . . . B 2 -57.989 -27.358 -6.148 1 20.25 ? NZ LYS 1 A 1 
HETATM 10 O OXT LYS . . . B 2 -52.018 -27.336 -10.016 1 20.47 ? OXT LYS 1 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#